Basic Information

Insect: Nebria ingens
Gene Symbol: -
Assembly: GCA_018344505.1
Location: JADQWA010000457.1:278207-280279[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00055 0.045 14.2 0.1 2 21 27 46 26 47 0.93

2 14 6 4.9e+02 1.5 1.5 1 20 56 75 56 81 0.85

3 14 0.00096 0.077 13.5 2.8 2 23 83 105 82 105 0.94

4 14 1.2e-06 0.0001 22.6 3.0 1 23 112 134 112 134 0.98

5 14 7e-06 0.00056 20.2 1.3 3 23 292 312 290 312 0.96

6 14 0.00022 0.017 15.5 0.1 1 21 320 340 320 341 0.93

7 14 0.00014 0.012 16.1 2.3 1 20 381 400 381 403 0.93

8 14 0.00032 0.026 15.0 0.3 1 23 408 431 408 431 0.94

9 14 3.3e-06 0.00026 21.2 0.4 1 23 437 459 437 459 0.98

10 14 0.00021 0.017 15.5 2.3 1 23 467 489 467 489 0.98

11 14 0.0043 0.35 11.4 0.5 3 23 497 517 495 517 0.97

12 14 0.0064 0.52 10.9 0.6 1 23 523 546 523 546 0.96

13 14 0.00046 0.037 14.5 0.2 1 23 558 580 558 580 0.97

14 14 9.5e-05 0.0077 16.6 0.4 3 23 669 689 667 689 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00055	0.045	14.2	0.1	2	21	27	46	26	47	0.93
2	14	6	4.9e+02	1.5	1.5	1	20	56	75	56	81	0.85
3	14	0.00096	0.077	13.5	2.8	2	23	83	105	82	105	0.94
4	14	1.2e-06	0.0001	22.6	3.0	1	23	112	134	112	134	0.98
5	14	7e-06	0.00056	20.2	1.3	3	23	292	312	290	312	0.96
6	14	0.00022	0.017	15.5	0.1	1	21	320	340	320	341	0.93
7	14	0.00014	0.012	16.1	2.3	1	20	381	400	381	403	0.93
8	14	0.00032	0.026	15.0	0.3	1	23	408	431	408	431	0.94
9	14	3.3e-06	0.00026	21.2	0.4	1	23	437	459	437	459	0.98
10	14	0.00021	0.017	15.5	2.3	1	23	467	489	467	489	0.98
11	14	0.0043	0.35	11.4	0.5	3	23	497	517	495	517	0.97
12	14	0.0064	0.52	10.9	0.6	1	23	523	546	523	546	0.96
13	14	0.00046	0.037	14.5	0.2	1	23	558	580	558	580	0.97
14	14	9.5e-05	0.0077	16.6	0.4	3	23	669	689	667	689	0.96

Sequence Information

Coding Sequence: ATGGCAGTGGAAGCGCTTCGCCAACTTGGCGGAATGTATACAAATGTAGTATCAACTGAACACAATTTACCGATGCTAAGTTGTAATACGTGCGAAATTAAATTTAATACTCTAGCAAATCTACAGGCTCACATATTAAATTGCAAAAACAATATCATCCAAACATTTAGCTGTGCGTTTTGCAAAGAAATGTTTATGGATGAAAGAGTGATGAGTAATCATGTTTGTAGTTTTCAAGAACATTTAAAGTGCAAATATTGTAACAAATTGTTCTTTAGAAAAATGGAATTATATAAACATGTACAACAAAACCATCGCATTGACCATCGTTTACATGAGTGTTCGGTTTGTCATCAACGATTTCCCAGACCATCAAGTTTAACAAATCATATGAAAATACACAATTATCAACCGGGTAGAGCTGTTTTAAATATCGCTGTTAACCCTGAACCAACAAACATCGATACTAATGACAATTTAAACCATTGGCCAATTGAACAGATATGCATGACTGAGGTCGCTGTTGAAACGACCTCAGTTGAAACTTTGCCGAACAAATGGAATTTAAATTATGACGAGAATTCATCGATTTTTGTTAAATCTACGCAAGAGGATGATCAAGGCATCATTGTAACGGAACATTTTTTGCATAACACCGCGGAAACGAATTCTTTAAGTAATATAGAAGACATTCAGGACAGCCAACAGATAATAAACACTGAGTATGAAGCACAAGATGGTTTGTTACCTGTTAAAGTAGAAATGCTACCGTACATGTCAGAATTGGATGCGAGTATGAATGAACCATTTCCCATTTCGAGTATTCCACAAATGGAAGTTGTGATATCAACCGACGAAAGAAAACCTCACCTGTGTACATATTGTGGGATGAGTTTTTCCCGGGAGAAAGCACTCGTTTCCCACATTAAAATGCACTCTATTAACTGGCCGACCTCACACGAGTGTGACATTTGCGGGGAAACATTTTCCGATGTACAAACTTTGAATGAACATAAACTAACTTGTAATTCAAACGATCTTAACTTTGAGCAACCTACCGAGGAACTAATAAAATATGTTTCACCAAATCGCGAAATCAACGAAAACAAACCTGTAAAACCACAAGTAAAAGTCGGAAAACATCCTTGTCCAGAATGCGACAAGCATTTTGCAACTAAACAAAAAATGTTTAGGCACATGTGGATTCACCGCAAAAAAACATATACTTGTGAGTTGTGTTCCACGACTTTCGAAGTTCAAAGCGAATTGGATAGACATCGTTTAGCCAATCATCCGAATGATAGTCCGTATGTTTGTCAAGAATGTGGAAAATGTTTTGCAAGTAGACAAGGATTATGGGAACATGGTAGAGTTCATGGAAGCGGTGCGGCAGGATTGTTCACGTGCACAAAATGTAGTAAAACATTTGCTAGTCGCCAAGGATACCTCATCCATAATCGAACTCATACTGGAGAACGACCCTACGGATGTCGATTTTGTTTGAAAGCTTTTCGCGATGGTGGAACACTACGAAAACACGAACGAATACACACTGGTGAACGTCCGCACGTTTGTCCAATTTGTTTACACGATTTTAATCAAAAAGTAGTGCTTAGAGAACATGTCCGTTGGGTGCACACCGCGAACAAAACCGAGAATGAAAATGGAATGTTTAGTTGTGAAATTTGTAATATGGGTGTATCGGATCGAGAAGAATTATGCGCGCATATTGTGCGACATAGTGATCAAATGGCGGCCGAAGCTAAATATATAAGTGCAAAAGCAACAGAAAATGTATCATTGAAAGTTGTATCAGATAAGTCACCAAAAAAAGGAAATAAAACAGAAACGAATATGTTTATTAAAGCAGAAGTTGAACCTGTAGTTGCAGATACAGAATCCAATATTAAAGAAATAATCTCTAGAGATACAATATTACAAACGCAAAAATTCAACATGGACAAATTTAGTGATCCTTCAAGTAGGAGTGTAAATGATATTGCATGTGATTTATGCGGCATCAAGTTTTCTTCTCAAAAAGATTTAATGAGCCATGTACATATACATATTTAA
Protein Sequence: MAVEALRQLGGMYTNVVSTEHNLPMLSCNTCEIKFNTLANLQAHILNCKNNIIQTFSCAFCKEMFMDERVMSNHVCSFQEHLKCKYCNKLFFRKMELYKHVQQNHRIDHRLHECSVCHQRFPRPSSLTNHMKIHNYQPGRAVLNIAVNPEPTNIDTNDNLNHWPIEQICMTEVAVETTSVETLPNKWNLNYDENSSIFVKSTQEDDQGIIVTEHFLHNTAETNSLSNIEDIQDSQQIINTEYEAQDGLLPVKVEMLPYMSELDASMNEPFPISSIPQMEVVISTDERKPHLCTYCGMSFSREKALVSHIKMHSINWPTSHECDICGETFSDVQTLNEHKLTCNSNDLNFEQPTEELIKYVSPNREINENKPVKPQVKVGKHPCPECDKHFATKQKMFRHMWIHRKKTYTCELCSTTFEVQSELDRHRLANHPNDSPYVCQECGKCFASRQGLWEHGRVHGSGAAGLFTCTKCSKTFASRQGYLIHNRTHTGERPYGCRFCLKAFRDGGTLRKHERIHTGERPHVCPICLHDFNQKVVLREHVRWVHTANKTENENGMFSCEICNMGVSDREELCAHIVRHSDQMAAEAKYISAKATENVSLKVVSDKSPKKGNKTETNMFIKAEVEPVVADTESNIKEIISRDTILQTQKFNMDKFSDPSSRSVNDIACDLCGIKFSSQKDLMSHVHIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039499;
90% Identity: iTF_01039499;
80% Identity: -