Basic Information

Insect
Nebria ingens
Gene Symbol
-
Assembly
GCA_018344505.1
Location
JADQWA010001183.1:126557-129137[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2.2e-07 1.8e-05 24.9 5.9 2 23 138 159 137 159 0.98
2 13 5.6e-05 0.0045 17.4 2.3 1 23 163 185 163 185 0.97
3 13 2.6e-07 2.1e-05 24.7 1.3 1 23 191 213 191 213 0.98
4 13 2.2 1.8e+02 2.9 0.3 5 14 234 243 233 244 0.84
5 13 0.08 6.5 7.4 0.2 5 23 262 280 261 280 0.96
6 13 6.5e-05 0.0053 17.2 0.7 1 23 286 308 286 308 0.97
7 13 7.7e-06 0.00062 20.1 4.3 1 23 314 336 314 336 0.98
8 13 0.0018 0.15 12.6 0.1 1 21 342 362 342 363 0.94
9 13 0.00015 0.012 16.0 2.0 1 20 472 491 472 496 0.92
10 13 2.5e-08 2e-06 27.9 0.3 3 23 498 518 496 518 0.96
11 13 1.5e-05 0.0012 19.1 2.3 1 23 524 546 524 546 0.97
12 13 1.2e-06 9.9e-05 22.6 0.6 1 23 552 574 552 574 0.98
13 13 6.5 5.3e+02 1.4 0.8 1 8 580 587 580 588 0.89

Sequence Information

Coding Sequence
ATGGCAAACCATTTTAATGTGTGCCGCACTTGTTTACAACAATCAAATCAATTGTATTCTTTATTCGGACCAGTAGAAACGCTTGAAAGTTATATAAACTATAAAAATATTGTTCAAAAAATTGCTGATATACAGATTACAGAAAATGATGGACTTCCTTCAACTATTTGCCAGCAATGTGTTGATGTAACAAATATATGTTATAAATTTAAAAAACAATGTCAACAATCTGATGCTAAATTACGTTTAAACAATGCGAAATCAGTCACAAACAAAACTGATCATACGAAATACTGCGAAACTAGGAGCGTGTTAGACAATGAATGTGTGAAACATGAAGCTGGCGATAAGTTATGTTCGGAAGATGAAAATGTTAAATGTGACGAGCCGAAAGAAACACAAAACACAAATAAATGCAATCATTGCAACAAAGAATTCAATAATCGAACGAATTTAAATAAACATATGCGTACACATACAAAGCGGCATTCATGTTCTGTTTGTAAAAAAGGATTTAGCCGTCTGTTTGATGTGCAACGACATATGACTATACACACCGGCTTGAAGCCGCATAAATGTGATTTATGCCCGAAAAGTTTCAGCCAATCTGGAACTCTAGCGACACATATACGTTCACATAACGAATACGTTAGCACAACAAAACCGAATCAGAAAGAAGAGAAGTTTTATTTATCTAACTTTTGCGGGAAGAAATTTCGTGACAACGGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATGCCCGCTAAAATTCGTCTCATCCGGTCGCCTGACTTCACATAGCCGTGTTCACACAGGCGAACGCCCATTTATATGTACTATTTGCGGGAAAACATTCGCGCATTCAACAGTTATCGCTTTGCATTTAAAAACACATTCAGGCCATCGCCCTTACACCTGCGGTGTATGCAACAAATCATTCACAACTCATTATTATCTAAATATACATAAAAGACAACACACGGGGGAGAAACCTCATCCTTGTGGGACATGTGGAAAATTATTTGCAGATCCGAAAGTTTTGAAACAACATCTAATGATACTAGAAAACGACGGACTGCCCTCGCAAATTTGTTCCAAATGTGTTCAAAACGTAACACAAGCGTTTGCATTTCGACAACAGTCTCAACAATCAGAACTGGCATTAAAAATCTATATTACACAGCAACATAAGCATAGTTCATCATCACCGAGGAATGATGATGATTCAATGACCGGTTTTGATATTTTAATCAAAAATGATGAGATACATGGAAATAAATCGAATAAAACTTCAAAAGTCTCGAAAGAAAACACAAAACGGAGAAAAAAGAGTAAAGAAGATAAAGATAATTCGACGGATGATGATGACACTGAACAACCACTGTATCCATGTCCTGAATGTACACAGTGTTTTACAACATATCACGATTTAAAAATTCATGCCGGAGTGAAGCCTCATTTATGCTCCGAATGCGGCAAAGGATTCACCCGTTCCGATGACCTAACGCAACACATGCGAATACACACGGGCGAGCGTCCATATATTTGTAACGTTTGTTGCAAATCATTTACACAATCTTCCCAATTGCAAGAGCACTTACGTGCACATGCAGATGAGAAAAGTTTCGTATGCACTACATGCGGCAAAGCATTTTCAAGGTACAATAGTTTATCAGGACACATGAAGATTCATACCGGTGGCAAGTCATTTCCGTGTGGAGTATGTGGTAAAAAGTAA
Protein Sequence
MANHFNVCRTCLQQSNQLYSLFGPVETLESYINYKNIVQKIADIQITENDGLPSTICQQCVDVTNICYKFKKQCQQSDAKLRLNNAKSVTNKTDHTKYCETRSVLDNECVKHEAGDKLCSEDENVKCDEPKETQNTNKCNHCNKEFNNRTNLNKHMRTHTKRHSCSVCKKGFSRLFDVQRHMTIHTGLKPHKCDLCPKSFSQSGTLATHIRSHNEYVSTTKPNQKEEKFYLSNFCGKKFRDNGSXXXXXXXXXXXXXXXXXKCPLKFVSSGRLTSHSRVHTGERPFICTICGKTFAHSTVIALHLKTHSGHRPYTCGVCNKSFTTHYYLNIHKRQHTGEKPHPCGTCGKLFADPKVLKQHLMILENDGLPSQICSKCVQNVTQAFAFRQQSQQSELALKIYITQQHKHSSSSPRNDDDSMTGFDILIKNDEIHGNKSNKTSKVSKENTKRRKKSKEDKDNSTDDDDTEQPLYPCPECTQCFTTYHDLKIHAGVKPHLCSECGKGFTRSDDLTQHMRIHTGERPYICNVCCKSFTQSSQLQEHLRAHADEKSFVCTTCGKAFSRYNSLSGHMKIHTGGKSFPCGVCGKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-