Ning014677.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000719.1:68514-72570[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00029 0.024 15.1 1.3 2 23 210 232 209 232 0.95 2 22 0.55 44 4.8 2.2 1 21 342 362 342 363 0.94 3 22 0.69 56 4.5 1.3 1 23 386 409 386 409 0.95 4 22 0.0044 0.36 11.4 0.3 2 21 417 436 416 437 0.93 5 22 0.011 0.91 10.1 1.9 2 23 445 466 444 466 0.96 6 22 0.0072 0.58 10.7 0.7 2 23 502 524 501 524 0.93 7 22 0.0017 0.14 12.7 3.0 2 23 531 553 530 554 0.96 8 22 0.0012 0.098 13.2 1.1 1 23 564 586 564 586 0.98 9 22 3.5e-05 0.0028 18.0 0.7 1 23 591 614 591 614 0.97 10 22 0.00082 0.066 13.7 4.1 1 23 651 674 651 674 0.97 11 22 0.0051 0.41 11.2 4.4 2 23 690 712 689 713 0.94 12 22 0.0011 0.087 13.3 0.5 1 23 733 755 733 755 0.97 13 22 0.0084 0.68 10.5 0.2 2 23 804 825 804 825 0.98 14 22 0.0018 0.15 12.6 6.5 1 23 865 887 865 887 0.96 15 22 4.2e-05 0.0034 17.7 1.9 1 23 898 921 898 921 0.98 16 22 0.17 13 6.4 3.4 1 23 933 956 933 956 0.90 17 22 8e-06 0.00065 20.0 3.0 1 23 994 1017 994 1017 0.97 18 22 5.8e-05 0.0047 17.3 0.4 1 21 1025 1045 1025 1046 0.95 19 22 0.021 1.7 9.3 0.7 1 23 1080 1102 1080 1102 0.97 20 22 0.00015 0.012 16.0 0.0 2 23 1111 1133 1110 1133 0.93 21 22 2.2e-05 0.0018 18.6 7.3 2 23 1137 1159 1137 1159 0.95 22 22 0.33 27 5.5 0.9 1 23 1210 1233 1210 1233 0.95
Sequence Information
- Coding Sequence
- ATGGATGATATAATTCAAAATATAAATAATGTGTGTCGATTGTGTTTATGTGAAGATGCAAATCTTGTGTCGATTTTCGAAGACAGTTCAACTTTATCCCAGAAGATAGTTTCTTGTGTAAATGTTGAAGTAAATATATCAGATAGAATGTCGACAATGATTTGTAAATTGTGTCTTGGTAAAGTTGACGAATGGTATGATTTTAAAAAATGTTGCGAAGATGTTCAGTTCAAGTTACGGCAATGGGCTAATAGTCTGGGTGGTGATAAATTCATACTGGGTGAGACAATGATTTATTTTCAGGGAATTACAATTAAGGAAGAACCTATTGATACAGATGATACTGAGCTGCTAATAGATACTTCTATGTGTATCAAAAGTGAACCACCTGATTCATTATCACCAAACTTATCTGACAATGAAGAACGCGTCGATTTTGAATATGACGAAATGCCCATATTGCATCCCGCCATTTCCATTGAAACAAACACCGACGATTTACTCATACCATCACTAGAATGTCCAGTTTCAATACACAGTATGGACGCCCCATTTTACAATAACACATTTAAACAAAATGACAGAGAGCACATCAGTGGTAGATTAAATCAAGAAAATCACGATACGGTCTGTCGCATTTGCGATAAAGAATTTAGCAACTATTATAATAGAAATCGCCACGAAAGAAACATGCATTCTTTGGAAAAAGAACTGTCTATAACGGCAGTGCGATCCCTCCGGCATGATCCTCTAGAAGAGTATAATCATCTTCCAGAAATGCCAGCTGAAGATAATAGCAGCGAAACTAGCAATGTTACGATTGAACAATTCGCAGCTAGTTTACAATTGATCCAAACCTCTCCGGTTGCAACGACGAAAGCCATCATTTCTGAAAAAGAATTTGCTGAGTTTAACAAAAGAATAGTTGGTCAGATCGAACGGGAACGTTGCGATTGTTGTGATCTACAACATTCACCGAGAAAAATAGTTGCTCATTTAAGAAAGACTTTAAATATACCAAATTATTCTTGTTTTTGGTGTTGTATTACATTTCCAAATCGCTCTCAGTTTATGCAGCACGCGAAAAAAAAGTATTGTAAACAACGAGCTCGTTTAGTTCATAGTGGCGATTATCCATTTAAAGCGTATCAGCATTACCAGTGTTCTGCATGTGAAACTTTATTCGTTCATAAATTATTCTTATTAACACACATAACTAACTTGCATAATCCTAAAGAATTTCCTACAACTTGCTATGTTTGTGGAGAAATGTTCGACACTAAAAACGACTATAAAGATCACACCCAATCGAGTACTTGTTTCATCAAATTATATTGTAGTATTTGCAAGCATGTATTTGATAATCAAACTGAGTTTGATAATCATTCCAAAATTCACGATTTTGAACCTGTACATGATTCATTGAATGGTTTTACGAAAGTAGATGTTTCAATGATCAAACAACAACCGGTTAGAAAAAATGTCCAAACCACCAGTCCAATAAGTTGTCATATCTGTAGTAGAAAGTATGCAACTTACAGGGGTCTATTAATGCATATGACCGAAGGGCATAAAAATTACAAATTAAAACGATGTAAAATTTGTCGTAAACGATTTATTTTTAAAAACGAAATTCAAGTTCACATGTTGACTGAACATCATCAAAGCAAAGAAATTGCATCGAATAACTTCTCTTGTGTACAATGCGGTGAACAATTTCCTACTTTGGATAAATGGTGCGAACACCAACAGACCCACACTGACTCAGTCCATCAATGCGAGGATTGTTCGAAAGTTTTTATCTCTGAAGAAGAATTGAAAGAGCACAAAAGCACTGCGCATTCTAATATAAAACTGAAGTTATACCGTTGTTCTGATTCGAATTCCTACAAAACTGTGTCTTCGTTTGAAGACACAGAAGATGAAACTACAAAATTAGATGACTGCCTCTTCAAATGCGACCAGTGTGACTGCACTTATAGAGTTAGGGCTTCGTTGATGAAGCACAGAAGATTAAAACATGGGTTGAAAGTTACGATAAAGGCACGGTCTAAATCGAATAAATTATCATGTGGTTTTTGTAAAAAGAAATTTACTAATAACGCATCATTGGTGTTGCATAAACGGCATATCCATCACCGAAATAATGGTAAAATCATAGAAACCGATCCAGATGATTCGAACAGTGTGTTTCCACATAGTTGTAATGTTTGTTCCAAGGCGTTTCCAACTATTAAAGCGTTGTCAATTCATGCTAAATCACACGCAACCTCTGCAGCAAAACTGACTGAAAATGCAAATGTTGCAGCCTCTCCAGAAAAATATCCAATAAAAGCTATGAATATGGATGCTCCTGAAAATATTGCTGCTCCAATAAAAGTTGAAATAGTTGAGCCAGTAGAAAATAGAACTTGTGATATTTGTGAAGATGTATTTCGAACGATTGGAGAGTATCAAAAGCACGCCAAAACGCATTCGAAAAAGAAAAAGAAAGCTAAAAGATGTCTGATTTGTAGAAAAAAATATATTCGATTGGAAAGTCATATGCGCCAAAGTCACAACGTAAAGACACAGCCCAAAAAAAGCTATGCATTTTGTTGTACACAATGTTCTGCAACATTTCAGTATCAAAGCCATTTGACGAAACATATGGAGCAACATGCAACAAAAGCGTATATTAACAAAACGGTTTATAAATGTCAGTTATGTCCTAAAGTATGTATAACATCGTTTGGGTTGACTTCTCATATGAAACGCGTGCACGAACATTGTGAAAATGATGACGAATCAAAGCCTTTTAAATGTAAATTATGTCCTAAATCATTCTTAACTCTTCAGGCACTAGGTAAACATTGTAGACGCACGCATACAGACCAGAAGCTCAAATATGAAGTTAAAGAAGAAACAGTCAGCGATGGAGAGAATTATATAGAAGAAATAATTTTGAATGAAGTAAAAAAAGAATCGACACATGTCACATACCAGTGTAAACATTGCAATAAGAATTTTAGCCGGCCAGGGCTCTGGCGAACACATATGTTCAAAGCTCATCCAACAATGAAAATAAAAAAATTCACTTGCACGCAGTGCAATAAAATATTCCCCTCGCAGCTGTCTCTGACGCGTCATTTAAAGATATTTAAAAATAGTAAGATGCACATAAAATATGAAATGACTAAAAACCAAACGGATAAAGAAAACAATATCACAGCACAGATTAAACCAGAAATATCTTCATTCAAATGCAAGCTTTGTAAAATGGTATTATTAACTGAGTCCAACTATAAACGACATATAGCTTGGCATAAACGTAAGATGGGTGTAACCATACCTTGTCCTATTTGCAACGAATCGTTTAAAACCGCGAATGCTTTGATAATACACAATCGAGCGAATCACAGAGAAGGTACCTGTAAGTATTGTAACAGATCATTCTCGCAACAGCATCACTTAAAGAGACACCTTGAAAGTAAACATGCCAGAGAATTGAAACGAGAATCACGGCTGGCGGGGAAAATTAAAAAAGCCAAAAAAGCCGCAATGCTTGAGACTAAACTGAAACTTAAGGAAAAAGTTAATAGAGATAACGGCAGTGACACTGTGAACCCAGTACAAACGGAACGTGTGTACTCGTGCACAGCTTGTAACATGACGTTTTTAAATGCAAATAAACTTCGATTGCATGTGACAAAAACTCATAATATGGCATTAACCGAATAA
- Protein Sequence
- MDDIIQNINNVCRLCLCEDANLVSIFEDSSTLSQKIVSCVNVEVNISDRMSTMICKLCLGKVDEWYDFKKCCEDVQFKLRQWANSLGGDKFILGETMIYFQGITIKEEPIDTDDTELLIDTSMCIKSEPPDSLSPNLSDNEERVDFEYDEMPILHPAISIETNTDDLLIPSLECPVSIHSMDAPFYNNTFKQNDREHISGRLNQENHDTVCRICDKEFSNYYNRNRHERNMHSLEKELSITAVRSLRHDPLEEYNHLPEMPAEDNSSETSNVTIEQFAASLQLIQTSPVATTKAIISEKEFAEFNKRIVGQIERERCDCCDLQHSPRKIVAHLRKTLNIPNYSCFWCCITFPNRSQFMQHAKKKYCKQRARLVHSGDYPFKAYQHYQCSACETLFVHKLFLLTHITNLHNPKEFPTTCYVCGEMFDTKNDYKDHTQSSTCFIKLYCSICKHVFDNQTEFDNHSKIHDFEPVHDSLNGFTKVDVSMIKQQPVRKNVQTTSPISCHICSRKYATYRGLLMHMTEGHKNYKLKRCKICRKRFIFKNEIQVHMLTEHHQSKEIASNNFSCVQCGEQFPTLDKWCEHQQTHTDSVHQCEDCSKVFISEEELKEHKSTAHSNIKLKLYRCSDSNSYKTVSSFEDTEDETTKLDDCLFKCDQCDCTYRVRASLMKHRRLKHGLKVTIKARSKSNKLSCGFCKKKFTNNASLVLHKRHIHHRNNGKIIETDPDDSNSVFPHSCNVCSKAFPTIKALSIHAKSHATSAAKLTENANVAASPEKYPIKAMNMDAPENIAAPIKVEIVEPVENRTCDICEDVFRTIGEYQKHAKTHSKKKKKAKRCLICRKKYIRLESHMRQSHNVKTQPKKSYAFCCTQCSATFQYQSHLTKHMEQHATKAYINKTVYKCQLCPKVCITSFGLTSHMKRVHEHCENDDESKPFKCKLCPKSFLTLQALGKHCRRTHTDQKLKYEVKEETVSDGENYIEEIILNEVKKESTHVTYQCKHCNKNFSRPGLWRTHMFKAHPTMKIKKFTCTQCNKIFPSQLSLTRHLKIFKNSKMHIKYEMTKNQTDKENNITAQIKPEISSFKCKLCKMVLLTESNYKRHIAWHKRKMGVTIPCPICNESFKTANALIIHNRANHREGTCKYCNRSFSQQHHLKRHLESKHARELKRESRLAGKIKKAKKAAMLETKLKLKEKVNRDNGSDTVNPVQTERVYSCTACNMTFLNANKLRLHVTKTHNMALTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -