Ning012882.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010001441.1:29581-37604[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0023 0.19 12.3 0.0 1 23 133 155 133 155 0.97 2 15 3.4e-05 0.0027 18.0 0.0 1 23 159 181 159 181 0.98 3 15 0.0039 0.31 11.6 0.2 1 23 187 210 187 210 0.94 4 15 0.18 14 6.3 0.0 1 23 241 263 241 263 0.95 5 15 0.00085 0.069 13.6 0.1 1 23 269 291 269 291 0.98 6 15 0.00099 0.08 13.4 0.1 1 23 297 319 297 319 0.98 7 15 0.00023 0.019 15.4 0.1 2 23 326 347 325 347 0.96 8 15 1 84 3.9 0.1 2 17 361 376 360 377 0.91 9 15 2.7 2.1e+02 2.6 0.1 10 23 402 415 401 415 0.86 10 15 0.0001 0.0081 16.6 0.1 1 23 428 450 428 450 0.98 11 15 5.3e-05 0.0043 17.4 0.2 2 23 464 485 463 485 0.96 12 15 0.00021 0.017 15.6 0.1 1 23 498 520 498 520 0.98 13 15 5e-05 0.004 17.5 0.0 1 23 533 555 533 555 0.97 14 15 4.1e-06 0.00033 20.9 0.2 1 23 561 583 561 583 0.98 15 15 1.4 1.2e+02 3.5 0.0 11 23 599 611 595 611 0.89
Sequence Information
- Coding Sequence
- ATGTCTGAATTAAGAGATATTAATTTAGATCAAGTATGCAGAGCATGTCTAACGTCTTCGGGCGATATGACGTCGTTATACGAAGCGATTTCCAGCTCGTATATTGTGTCTTTAGCGGAAATGCTTACGATAATGACACCTTTAAAGTGCGCGAAAGACGACGGGAAACCTTCCAAAATGTGCGAAAAGTGTATCGATGAATTGACACGATTTAACACGTTTCAAATTAAATGTTTAGAATCCGATACGATACTAGAAAAACATATTAAGAACACTATTGAACCGAGCAAACAAATCTCGGATGTGGTTAGTGATGTTGAAGTTTTAATTCAACATGAACAGATTGTCGATGAAAATGTATTTTCAGTTAAAGAGGAGCATTTAGATGATGAAATATATTCGTGTGAAGTGTGTGACGCTACGTTTATTATAGAAGAGTTATTAACGCAGCATGTCCAAGAGCATTTGGAGTTATATTCATGTGAAATATGTGACGCTACATTCGTGACTGAGGAGTTATTGAGGCTTCACGTGCAAGTGCATACTGGACAGGATTTTTATGTGTGTGAACACTGTGATGCTAGTTTTATGCTTGAATATTTGTTAGAGTTACATGTGCAAGAGGAACATATGACTGAGAAAGTGTATGCGTGTGACGCTATATTCATTGCAGAGGAGTTATTGGTGGAACATATGCATGAACGTACAGTGGATAAATTGTTTTTATGTGAAGTTTGTAGCGATACATTCGCTGCAGAACAGTTGTTAGTTGAACATATGCAAGTGCATAATGTAGATTTGCTATTTTCTTGTGACACTTGTAGCGCTACGTTCGCTATAAAAGAGTTATTATCTGAACATATGCAAGTGCATAATGGAGATAAGTTATTTTCATGTCGAGTTTGTAGCGCTACATTCGCTATAAAGGAGTTATTAATTGATCATATGCAAGTGCATTATGGAGATATTCCATCACCATGTGGCGTGTGTAGCGCTACATTCGCTACAAAAGAGTTATTTACTGAACATATGCAAGTGCATAACAAAGATATCTGCTTGCATAATAGGAATTTGTTATCTCCATGTGGAGTATGTAGTGCTAAATTCGCTACAAATGAGTCTTTAACGGAACAAATGCAAGTGCATAGTAGAGATATATGTGTGCATAATGAAGATAAGTCATTTCCATATGGAGTTTCTACATTCGATATAAAAGAGTCTTTAATGGAACATATGCAAGTGCATAATGGGAATATATTTGTGCATAATGAAGATATGTCATTTCCATGTGGAGTTTGTAGTGCTACATTCTCTATAAAAGAGTCTTTAACGGAACATATGCAAGTGCATAATGGAGATATGTGTGTGCATAATGGAGATCTGTTGTTGCCATGCGGAGTGTGTAGTAATACATTCACTACTAAAGAGTATTTAATGGAGCATATGCAAGTACATAATGGAGTTATGCGCATGCATAATGAAAATATGCTGTTTCCATGTGAAGTTTGTAGCACTACGCTCGCTACAAAAGAGCTTTTGAAGGAACATATACAAGTGCATAATGGAGATATGTGCGTGCATAATGAAGGTATGCTATTTGCATGTGGAATTTGTAGCGCTATATTCGCTACAAAGGAAGCTTTAACGGAACATATGCAAATGCATAATGGAGTAGTGTTATTCCAATGTGACGATTGTAGCTCTACATTCGCTACAAAAGAAGCTTTAACGGAACATATGCAAGTGCATAACGAAGATGTCCTTTTTGCATGTGGACTTAGTAACGCTACAATCGCTACTAAGGAAGCTTTAACGGAACATATGCAAGTGCATAATGAAGATATAGATATTGAAGAGATATTTTCCAAAAATTGCAATATTGGTCATTTATCTTGGCAGTTTGATGATCGCGGCGGATCTGACTAA
- Protein Sequence
- MSELRDINLDQVCRACLTSSGDMTSLYEAISSSYIVSLAEMLTIMTPLKCAKDDGKPSKMCEKCIDELTRFNTFQIKCLESDTILEKHIKNTIEPSKQISDVVSDVEVLIQHEQIVDENVFSVKEEHLDDEIYSCEVCDATFIIEELLTQHVQEHLELYSCEICDATFVTEELLRLHVQVHTGQDFYVCEHCDASFMLEYLLELHVQEEHMTEKVYACDAIFIAEELLVEHMHERTVDKLFLCEVCSDTFAAEQLLVEHMQVHNVDLLFSCDTCSATFAIKELLSEHMQVHNGDKLFSCRVCSATFAIKELLIDHMQVHYGDIPSPCGVCSATFATKELFTEHMQVHNKDICLHNRNLLSPCGVCSAKFATNESLTEQMQVHSRDICVHNEDKSFPYGVSTFDIKESLMEHMQVHNGNIFVHNEDMSFPCGVCSATFSIKESLTEHMQVHNGDMCVHNGDLLLPCGVCSNTFTTKEYLMEHMQVHNGVMRMHNENMLFPCEVCSTTLATKELLKEHIQVHNGDMCVHNEGMLFACGICSAIFATKEALTEHMQMHNGVVLFQCDDCSSTFATKEALTEHMQVHNEDVLFACGLSNATIATKEALTEHMQVHNEDIDIEEIFSKNCNIGHLSWQFDDRGGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -