Ning001372.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000067.1:56860-59728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5e-05 0.002 18.5 5.1 1 23 319 341 319 341 0.98 2 15 0.042 3.4 8.3 1.5 2 23 347 369 346 369 0.95 3 15 0.0002 0.016 15.6 2.4 2 23 406 427 405 427 0.96 4 15 0.0001 0.0081 16.6 0.7 1 23 431 453 431 453 0.99 5 15 8.3e-09 6.7e-07 29.4 4.2 1 23 459 481 459 481 0.99 6 15 0.035 2.8 8.6 0.8 1 23 589 613 589 613 0.88 7 15 0.00018 0.014 15.8 0.1 1 23 625 647 625 647 0.98 8 15 4.6e-05 0.0037 17.6 4.2 1 23 664 686 664 686 0.98 9 15 5e-05 0.0041 17.5 0.7 1 23 741 763 741 763 0.96 10 15 6.4e-05 0.0052 17.2 0.4 1 23 770 792 770 792 0.98 11 15 2.4e-08 1.9e-06 28.0 0.2 2 23 802 823 801 823 0.97 12 15 0.047 3.8 8.2 1.7 3 21 829 847 828 848 0.95 13 15 0.01 0.82 10.3 0.8 2 23 854 876 853 876 0.94 14 15 0.0006 0.049 14.1 1.6 1 23 882 904 882 904 0.97 15 15 0.00046 0.037 14.5 1.5 1 23 912 934 912 934 0.95
Sequence Information
- Coding Sequence
- ATGTATTGTTTTGCGAAAATCTGTCGCATTTGTCTAAATGCACCAGACACCAGATTGATTAAATTAAATAATCTCGATTACGACAAGATACGAATACGGGAAAAGTTGAAATGTTGCATACCAGAAGTTATCAATGCAAACAACTTGTCAGAGTTGATTTGTATCAGTTGTTGCAAGAATTTGCGGCGCTCGTATTCGTTCAAACAAATGTGTTTACAGAACATGGACAAATTGAACAAATACGCTTCGCAATTGGTTGTTTCTAAGAAACATAAACAAGGTAAATTAAGTATTGGTTTAGTTGATTTAAATGAAAAAAATCAAATGGTAGTGAGATCTTCAGACGATATGCCCATTGCAAAAAATTTAAGTTTAACCTCCGAAAGTGTCTCTATGTACACAATCTCATTGAACCAATGGGATCTATTCGAAACTAAATTTACGTGCCGTTGTATTAAAGAGTATAGTTCGTTTACCGAAGAAACTAGACATTTATGTAAAAGTTGTGAAGGTGATTTGTTGGGTTTTCAATTATCGAAAGTTAAAGTAGGTATATCTGAAAATCGTTATAATTCATCTCAAAGTTCGAGTGAATGCGTTTTAAGTGCGCAACAAAGTGAAATTAGTTACGAGTACAGTTCTGAATCGTTGCCAAGTCTCGAATCTCCGCGTGCTGATTCGCACAAAAAAAGATTTTTAAACTCACCGAATTCGCGCCAAAATGACACTAATACCTCAATGTTAAACGATGAATCGTCAATGCAGGACGAAGTTAGCTATGATTACAGCGATGTTCTAATGTGTAAAATGCGAGTAAGTAATACGCAGAATGAAGTCAATATGCTGCGCAGAGTTAGTTATACACAATATACTGATAGCGTTACTGATCGTACAAGTGAACCCAGCGATACTGAAAACAATTCGTCTGATACAAACATTCATTCAAACCAGCGGCATAAGTGTCCGCTTTGCGTAAAGAAATATACTAGACAATATGATTTATTTCGACATTATAAAACACACAAAAAAACACTTCTACACTGTGTACAATGCGCAAAACAATACATGTACCAAGAGGACTTAGACAAACATATTCGAAAAACACACACACTAAAACGCAAGTCTATAGTGCGTAAACAAATAACGCGTATTTATGTTCACAAAAAAGAACAGAAAGATTTTGAACCAGACGTAACCGATATTGAAACGGATTTGAATTGTACGGTTTGCAATGAAAAATTCGAAAATAAAACATGTTTAACAGTACATTTAATGACACATAAAAAAGATTTCAAATGCAGAAAATGCGATGAAGAGTTTATCGTAAAAGAAAAACTTACGGAGCACTTGTTAACGCATACGGTGCCGCGTATCTACCAATGTAATTACTGCAGTAAAAGCTTCAACTATTCCAGTAATTTAAAGCGCCACATGCGCAGCCACACCGTTCCAACATATAATCGCGATATAGAACAAATTCGCAAAGAAAAACAGCATAACGGTACAAAATTATCTGAAACGCATACATCTTCTAAGAAAAAGAACAGTAAAAATCGCGAAATTATGTTGTATAACTCGATAAATACATTAAATGAGAATCATAAAAAGAAAATGAAAACAAATGATAGTCCTAAAAAATCAAAATCTCTTGAAATTGAGTTGTTCAATCCTTTAAAATCACCCAAACACGATATGTCCCGTAAAAGTAATGATACTTTCATAAATACCGTGTTTACTCATACTCCGTCTACCGCAAATGGTGATTACGCATGCGTAGAACCAAATTGTGACCAATCATTTTCAGTTTTAAAACAATACTACCGCCATTTACATGATCATAACGCGTTTCGGTCTAAAAAAGATAAAAAGCTTTACAAATGCGTCGAATGCGACAAAATGTATGTACAAATTGCTACTTTATATAATCACATGGTCGTGCATCCTTCCGGTAAGAAAAAAATCAATCATTTTCTACCGGAAGGCTCGCGTTTTACTTGCAAAGATTGTGGTAAACAATACAATTATATAAAACATTTTAAACGTCATATCGCGACACACAATTTGAATAGCAACGACAATGATACCCAGGTTGAAGACGATATTTTAGATGATTGTGAACCGAATGATGTAAGCGACATTAAAAACGAATCAATCGATGAGAACTATAATGACGAGATTATTCCGCAACATTTTCTCGCACAAACAAACGAGTCGAAAGCATTCGCGTGCGTACAATGTGCGAAAAGTTACACAAGTAAACAGAGTTTAAAACGACATATGCTAGCACATACGGGCCAAACAGAAAAATACTCATGTTCTATTTGTTTTAAACAATTTATCCAGCTAGAAGTTCTAGAACGGCATATTTTAACTCATTCGAAACGACCAGATGAACGTGAATGGGTGTGTGAGGTTTGCGATAAAGCGTTTAGGCAAAAAGCGAATTTAAAACGGCATATGATGGTTCACGAAAGGCCGTTATTATGTAACCATTGTCGCGACCGTTTCGATCATAAAGACGATCTTTTGAAGCATATTATAAAATTTGCACGTGGTAAATATTGTAAGTTGTGCAAACTTGAGTTTAGCAAACGGACCGATATGGAGATGCATATGCTTGAAGAGCATACGAACTGTAAAGATTATTGTTGTAATGTTTGTAATGTTAATTTTGAAAACGCTGATTTTTTTCGGAAACACATTTTAATTCATCCACAGGAAGCGGTACGGAAATTTGAATGCGGGTTTTGCGATAAAGCATACGTTACTAAACATGGGTTGATTCGCCATAACTATTCACATACAACTTAA
- Protein Sequence
- MYCFAKICRICLNAPDTRLIKLNNLDYDKIRIREKLKCCIPEVINANNLSELICISCCKNLRRSYSFKQMCLQNMDKLNKYASQLVVSKKHKQGKLSIGLVDLNEKNQMVVRSSDDMPIAKNLSLTSESVSMYTISLNQWDLFETKFTCRCIKEYSSFTEETRHLCKSCEGDLLGFQLSKVKVGISENRYNSSQSSSECVLSAQQSEISYEYSSESLPSLESPRADSHKKRFLNSPNSRQNDTNTSMLNDESSMQDEVSYDYSDVLMCKMRVSNTQNEVNMLRRVSYTQYTDSVTDRTSEPSDTENNSSDTNIHSNQRHKCPLCVKKYTRQYDLFRHYKTHKKTLLHCVQCAKQYMYQEDLDKHIRKTHTLKRKSIVRKQITRIYVHKKEQKDFEPDVTDIETDLNCTVCNEKFENKTCLTVHLMTHKKDFKCRKCDEEFIVKEKLTEHLLTHTVPRIYQCNYCSKSFNYSSNLKRHMRSHTVPTYNRDIEQIRKEKQHNGTKLSETHTSSKKKNSKNREIMLYNSINTLNENHKKKMKTNDSPKKSKSLEIELFNPLKSPKHDMSRKSNDTFINTVFTHTPSTANGDYACVEPNCDQSFSVLKQYYRHLHDHNAFRSKKDKKLYKCVECDKMYVQIATLYNHMVVHPSGKKKINHFLPEGSRFTCKDCGKQYNYIKHFKRHIATHNLNSNDNDTQVEDDILDDCEPNDVSDIKNESIDENYNDEIIPQHFLAQTNESKAFACVQCAKSYTSKQSLKRHMLAHTGQTEKYSCSICFKQFIQLEVLERHILTHSKRPDEREWVCEVCDKAFRQKANLKRHMMVHERPLLCNHCRDRFDHKDDLLKHIIKFARGKYCKLCKLEFSKRTDMEMHMLEEHTNCKDYCCNVCNVNFENADFFRKHILIHPQEAVRKFECGFCDKAYVTKHGLIRHNYSHTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -