Ning015062.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria ingens
Gene Symbol
-
Assembly
GCA_018344505.1
Location
JADQWA010000207.1:778812-783174[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00012 0.0099 16.3 4.1 1 23 326 349 326 349 0.96
2 20 0.0075 0.61 10.7 0.5 2 20 368 386 367 389 0.91
3 20 0.044 3.5 8.3 2.7 2 21 393 412 392 413 0.92
4 20 1.2e-05 0.00099 19.4 0.3 2 23 419 441 418 441 0.96
5 20 6.4e-05 0.0052 17.2 0.3 1 20 452 471 452 474 0.93
6 20 0.00013 0.011 16.2 0.5 1 23 480 503 480 503 0.95
7 20 0.00014 0.011 16.1 5.9 1 23 509 531 509 531 0.98
8 20 0.00068 0.055 13.9 3.7 1 23 547 570 547 570 0.97
9 20 6.9e-05 0.0056 17.1 2.2 1 23 673 695 673 695 0.98
10 20 0.00063 0.051 14.0 3.4 1 23 700 722 700 722 0.98
11 20 6.5e-05 0.0053 17.1 0.4 1 23 727 749 727 749 0.97
12 20 1.4 1.2e+02 3.5 4.7 1 23 792 814 792 814 0.95
13 20 4.1e-05 0.0033 17.8 4.3 1 23 819 841 819 841 0.96
14 20 0.00016 0.013 15.9 2.0 1 23 995 1017 995 1017 0.98
15 20 0.00082 0.066 13.7 0.8 1 23 1023 1045 1023 1045 0.98
16 20 0.00015 0.012 16.1 1.6 1 23 1051 1073 1051 1073 0.95
17 20 0.00059 0.048 14.1 2.3 1 23 1079 1101 1079 1101 0.98
18 20 0.00059 0.048 14.1 0.4 1 23 1107 1129 1107 1129 0.99
19 20 7.5e-05 0.006 17.0 1.2 1 23 1135 1157 1135 1157 0.99
20 20 9.9e-05 0.008 16.6 4.7 1 23 1179 1202 1179 1202 0.95

Sequence Information

Coding Sequence
ATGAAAAATGATTTTAATATAAATAAAGTGTGTAGAACATGCTTAACAATTGGAGAAATGAAGTCATTATACGAGAAAACTGCAACAGAACTAAGTCTTGCGGAAATGTTAATGTCTTGCACTACCGTAGAGTATTATGGAAATGATGGTCTACCGAATCAAATCTGCACTGACTGCGCTTGCGAAATAAATCGCTCTTACAAATTCGCGACAAAATGTCGAGAAGCGGACGACAAACTCCAGGTACATTTACGGCAGTATCAAAAATCTGAACTTAAAATCGAATTGGACAGTGTGTCCAACATACTTGTAGATGATAGTTCTGACGAAATTAGTATTACTCAAAGCATTTCTAATATAGATAATAGTTCAACGGCTGACGAAATAAATAATGAAGTCAGTTTCGATATGGAATTTTGTAAAAATGAGATTATTAATCTAGATTTTACTAAATTTGAAATCGATGATGGCGAATATAATGTTGTTGATAGTGAAATTGATTTGTCGGGTGAAAGTATTGATAATTCATGGTTTTTATCAACTCAAACTAATTCCGCGTCACCGGATACTCCATATCTAGATATTGAAAGTGATCAAAATCAAGATATGGTTTGTGTAAAACAGGAAATAAGTGACGATATTGATACTTTATTAATAAACAGTGATAGTATGGATGTAAGTGATTTAAAAATTGAAGTTAAAACTGAAAGAGTAACTTCAATGATAGATCCTTTTGAAATAAACTTATTATCGCCAGTTGTTGATTATAAACAAGAAAACGAATCATCTAGGGATCAATCGCCAGTATTGTCGATCCCGGAAAGCCAATCTAAAATAGTTACTGAGTCAAACGAACCAGATATACCTCTCAACTTTTTAAACTCTATTGTAGTTTTAGAACGACTCGATTTAGAATCTATAATTAATAATAGTAATTTACGACTCAATTTACCTGATTCAATTGAAACAAAACAATTCCAGTGTAAGTTTTGCGTAAAAAGTTATGCCAGAAAAAGTAATTTAACTTCTCATTATTACAAAAAGCATCCTAAAGAACTTCCAAGTAGGGCTTTTAAAGAACAACTCGGCAATAAATATCTCTCTTGTGGAATTTGTGATCAACGTTTTAAATGGAAATCGGATTTAATGCGCCATTATCCCAAACATAGTAGATTGACTTGTTTATTTTGTAAATTGAAGTTTACTAAAAGAAAACACTTAAACTTGCATTTGCTCAAGTGTAAAAGTAAATTACAATGTAAACAATGTGAGAAAGCGTTTGATAACAATGCAAGTTTACAAATGCATATGTTGCGGGTGCACTTTAAATATGAACCACGTATAGAGAAAAGTTTCGTTTGTACCATTTGTAAAAAAAGCTTTCCGGCCCGAAGTAAATTAGTGCGTCATATGCCTGTGCACATTAAAAAATCACCGTTTTCTTGCCCGATTTGCCAGAAAAAATATAAACGAGTCACCGATGTAAACCGACATATACTACAGATACACGATCAAAAACATGTATTTTCTTGTAAAATGTGTCATCATCGCTTTAATAATAAACCGAGCTTAAACAAACATATTGAAACGCATAAACAAGAATTAAAACAAACGAAATCACGCAAAAGAAATCCGCGATTTTCTTGTCGAGTTTGTGCAATGCATTTCACTAATAAACGATCGTTAACGAAACATATACAAAAAATGCACTCACTTGCAATCAAAAATGAGCAAAGCAATTCCCAAACTTCAAATATACAAACTCAGTTTAAAAATGAAGTTTATTCAACTGAAAGCAGTAGTGAAAAGTATTCTAGGAAAGTGGATATTGAAGAAAGTTATACATTTCGTAAACGAGTTCCTCGACAACAATCATACCATGAATTAACAGATGTAGATTCGGACTCAAATAGCGAATGTGAATCTTCAAATGATGAGAAAAAGCCCAAAATTGACCCAACACCAGCTAATAACGATGAATTAAATCCAATTAGTAACCAAACAAGTAACACTCACTTTGAGTGTACAACATGCAGCAAAAAGTTTAATTCTTATAGTGATTTAATATCTCATACAAAACTGCATTTAGGAAATAAGTTTTCATGCGCGAATTGCGGCAAAAACTTTGCACGCAAATGTAATTTATCATTCCACATGCGGTTACACACAGATACACTGTTTTCTTGTTCGCTATGCCCTAAGATGTTTATCACTGAATATTATTTAAATCTACATTTAAATGCTCATGCCAGAAGGAATAATTTATCAAAATGTAAACAAATTCTTGATATCGAACGCCCAATTTCAAAAAAGAAAACGCAGTTAGAATTGACAGTTCAAAATATTAATTTAATTAAATTAAATGCAAAAGCATTTCAATGTTCGGTGTGTCGGAAAAAGTTTTTAACTAAAGGTAGATGTCTGAATCATATGCGGTTACACTCAATAATGAAGCATTTCTGTCGCATTTGTAATAAATCGTTCACTTATTTAAACTCATTACGGTCCCATATAAGGAGCCACTATCGAAAACCGAACGAAAATTTAGAATCTATTGAATCAGAGAATGTTGAATCTTTAGAATCACCGCATGTTGACGCGTTTACATCAATGAATATTCAAGAATTAAATTCCGAACATGTTGAATCTTTAGAATCACCGCATGTTGAAGTGTGTACATCAGAGAATGTTCAAGATTTAAATTCAAAAGATGTTGCATCTATAGAATCACCGCATGTTGAAGCGTTTACATCAAAGAATGTTAAAGATTTAAAATCAAAACATGTTGAATCTTCAGAATCACCACATGTTGAAGCTTTAGAACCACCGCATCTTGAAGCTGTAGAATCACCGCATATTGAAGCTTTAGAATCAACGCGTGTTGAAGCTTTACAATCAAAAAATGTTACGACTTCAAAATCAGAGGATGTTGAATCGTTAATTTCACCGAAAACTGAACCAGACTTGCCTGTAGGAAAGCGTCATAAATGTGGAATGTGCAAACATCCATTTCGTAAAATCGATGATTTAGAGGCTCATATGAAAGTGCACAGTAGTGCCAATCCATTCACGTGTACATTTTGTGGGGAAATATTCGATGAGCTTACTGGTTTAAAATTGCATATGCATATACACGATGAAGAGCGGCAATACGCATGTTCGTATTGTTCTCAAAAATTTATATACAAAAACAATTTAAGACGACATGAATTGTTACATAGCTACGCACAACGTTTCGAATGCGATATGTGCACTCTTAGCTTTATTCATAAGTTCCGCTTGATTTGGCATCAGAAAATGCATTTCAGCGGGCCAATTTATCAGTGTACGAAATGCCCGGAGACGTTTGATGTAGGGGTTAAATATGAAGAACATATGAAAACTCACAAAATGTACAGTCCGTATAGTTGTACGCTTTGCGACATTCCATATTATAATCAACAATCTTTTAAAAACCATATGCTCACCCATTGTGAGAGTTCGGTTCATAACGAAGAAACAAACCAAAATGTGTTGCCGCATTCCGACGATATATTTACTTGTAAAATATGCGATCAAACATTTAAAACGAAATCTGAATTTTATTCGCATACACAGCATGTTCATATTAAAGTATAA
Protein Sequence
MKNDFNINKVCRTCLTIGEMKSLYEKTATELSLAEMLMSCTTVEYYGNDGLPNQICTDCACEINRSYKFATKCREADDKLQVHLRQYQKSELKIELDSVSNILVDDSSDEISITQSISNIDNSSTADEINNEVSFDMEFCKNEIINLDFTKFEIDDGEYNVVDSEIDLSGESIDNSWFLSTQTNSASPDTPYLDIESDQNQDMVCVKQEISDDIDTLLINSDSMDVSDLKIEVKTERVTSMIDPFEINLLSPVVDYKQENESSRDQSPVLSIPESQSKIVTESNEPDIPLNFLNSIVVLERLDLESIINNSNLRLNLPDSIETKQFQCKFCVKSYARKSNLTSHYYKKHPKELPSRAFKEQLGNKYLSCGICDQRFKWKSDLMRHYPKHSRLTCLFCKLKFTKRKHLNLHLLKCKSKLQCKQCEKAFDNNASLQMHMLRVHFKYEPRIEKSFVCTICKKSFPARSKLVRHMPVHIKKSPFSCPICQKKYKRVTDVNRHILQIHDQKHVFSCKMCHHRFNNKPSLNKHIETHKQELKQTKSRKRNPRFSCRVCAMHFTNKRSLTKHIQKMHSLAIKNEQSNSQTSNIQTQFKNEVYSTESSSEKYSRKVDIEESYTFRKRVPRQQSYHELTDVDSDSNSECESSNDEKKPKIDPTPANNDELNPISNQTSNTHFECTTCSKKFNSYSDLISHTKLHLGNKFSCANCGKNFARKCNLSFHMRLHTDTLFSCSLCPKMFITEYYLNLHLNAHARRNNLSKCKQILDIERPISKKKTQLELTVQNINLIKLNAKAFQCSVCRKKFLTKGRCLNHMRLHSIMKHFCRICNKSFTYLNSLRSHIRSHYRKPNENLESIESENVESLESPHVDAFTSMNIQELNSEHVESLESPHVEVCTSENVQDLNSKDVASIESPHVEAFTSKNVKDLKSKHVESSESPHVEALEPPHLEAVESPHIEALESTRVEALQSKNVTTSKSEDVESLISPKTEPDLPVGKRHKCGMCKHPFRKIDDLEAHMKVHSSANPFTCTFCGEIFDELTGLKLHMHIHDEERQYACSYCSQKFIYKNNLRRHELLHSYAQRFECDMCTLSFIHKFRLIWHQKMHFSGPIYQCTKCPETFDVGVKYEEHMKTHKMYSPYSCTLCDIPYYNQQSFKNHMLTHCESSVHNEETNQNVLPHSDDIFTCKICDQTFKTKSEFYSHTQHVHIKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-