Ning016130.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000932.1:84211-87569[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.3e-07 4.3e-05 23.7 0.9 1 23 284 306 284 306 0.98 2 16 1.7e-07 1.4e-05 25.3 2.0 1 23 312 335 312 335 0.97 3 16 0.013 1 9.9 0.2 1 23 341 363 341 363 0.98 4 16 2.4e-05 0.002 18.5 0.1 1 23 369 391 369 391 0.98 5 16 0.00029 0.024 15.1 0.6 1 23 397 419 397 419 0.96 6 16 5.8e-06 0.00047 20.4 0.2 1 23 425 447 425 447 0.98 7 16 1.1 86 3.9 0.2 1 12 453 464 453 466 0.87 8 16 0.00066 0.054 14.0 1.7 1 21 583 603 583 604 0.92 9 16 3.4e-06 0.00028 21.2 0.4 1 23 648 671 648 671 0.98 10 16 0.00019 0.016 15.6 2.1 1 23 707 729 707 729 0.98 11 16 1.4e-05 0.0012 19.2 0.2 1 23 735 758 735 758 0.97 12 16 1.2e-05 0.00098 19.5 0.2 1 23 764 786 764 786 0.98 13 16 2.1e-06 0.00017 21.9 0.5 1 23 792 814 792 814 0.98 14 16 0.00046 0.037 14.5 0.6 1 23 820 842 820 842 0.97 15 16 1.7e-06 0.00013 22.2 1.8 1 23 848 870 848 870 0.98 16 16 1e-05 0.00083 19.7 2.2 1 23 876 899 876 899 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAAGAATTATCAAGCGGCGAATTAATTTCCGCTGAAGAACCGATTATACACCTCACAGAAAACGGCATTGAAGGTTTCGAAATCTTGTGCCGGCTGTGCGCGAACAGCAGCGATCATTTAATATCGATCTACAGTGAAGAAGGAATCACAAATGATCTAGCGGAGAAAATGAATTTGTATCTACCGGTAAAAGTGGCTAAATTGGATATTTTACCTCTGCAATGTTGCTTCCAATGTGCCAGTACGGTTTTGGCTTGGCACGAGTTGGTGGTTGCTAGTGTTGAAGCCGATCGAAGATTGCGTGATATTCAATTTGAAGTTGAAAAACAATTAGCTGGAGATGAACTTCCTGGAGAAGCTGCAGAACCAGGCACTTCACTAACGGAAGAAGTGGAGCAGAATGGACAAGAACATGAGTGCACAGAACCGCTCAAAAAACAATCTAAGCCTCAACATTTTAAAACAATCGAAGGCTTAACAAGTTTAAATATATCTACAAAAGTTAAAACGTTTAACTTTGAAAAATCAAAAACGACCATCAACGAAAAAATATCATACAATTTAAACAATAAATCAGAAAACTCAAATGCAACTAGCGAACTTGATAAAAATTCTAAAATAATTAATGATATAAATAGTTCAAAATTTGAAACATTTAAAACTACCGAAACCTCAAAGCCGAGCGTTCAATTAAATAGAATTGAATTTGAATTTAATCAGTCCAACAATTTATTAAATGATCAATCAAAAACAATTAATCACAATTTAAATATTAGAATAAGCAATACTTCTGAAAACGCTGAAATATATGGATTAGATCTACAAAAACCGGTAAAAAAGACGCATAAATGTCCTGAATGTCAAAAAATCTTCATCCAAAAACCCTCGCTTATCCGTCACTTACGGATACACCGTAATGAGCGTCCATACACCTGCCACGTATGCGGAAAGGGTTTCCGCGATGAAAGTGGATTAAACCGTCACATACGTCACGTTCATTTCCGGTCAAAATCATTTTCTTGCGATATCTGCGGCGATTCGTTCGCCTCGGCCGCCACTCGAGATGATCACCGCCGAAGACACACTAAAGAACGACCGTTTGTTTGTCAAGTGTGCGGGAAAATGTTTGGAGCTAAAGCAAACTTATTCATACACGCAAAAACGCACAGTGACGTGTTTCCGTTTGCGTGTAGTGTTTGCGCGAAACGCTTCCGTCGTAGACAGGAACTGATTGTGCATTCGACAACGCACACGGGTCAAAAACCGTACCAGTGCGAAGATTGTGGTCGCATGTTTAGAATTAGAAGCTTATTGGCTAGTCATCGATTAGTTCATACTGATTTGAAACCGTTTGTGTGTAAAATATGTGGGGTAGGATATAGGCAGATGAGGCCAAACGACACCGCAAGTCTGAGTCCATTTCGCCAAGACGACGTTGAAGTTGATGTGAAGTTAGTCGTTCCGTCCAATATCACCCCACCTCGGAAACGTGGCCGAAAACCCAAACACCAAACACAAGAAAGTAAAGACGATACTATCAAAGTCGAATCGTCACCTAGCGACACAGACGGGCAATGGATCAAAACCGAACTAGTAATGGAAGCAGACGATGCCATCAATCCCTTTATAGCAGACTGCGAATTAACGGAAGACATGGATGTGAAAATAAGTCCTCCAGTCTCTGATTCAGATGACTTAGATCCTGAATATGATCCTGGTAATGAGACCAAGACGAAAACACACCACTGTGCCACTTGTGGAAAATCTTTTCGGAAAATTGTCCAGTTACGGAGGCATGAAAAGCTGTGCACGAATGAGTTGAAAGAAGATTTATTTAAGGAAGAGTATCTAGAAGGAGATTTGGATGATATGGATAGAGACCCACTGGATGAGTTCCAGGACGCGGAGATATTTGAGCGAAAAATCAAACGGGAATATCGTTGTGATTATTGTCCAAAAATGACTGTTCGTCGTGAAGATTTAAAGGATCATGTCCGGACGGTTCATCCAGAAAAATTTGAAACTTTTTCAATGCAAAGACAACGGAAACGAAGTAAAATCGATCAAGAAGCAGTGAATCGCGCTAAGGTCGTGGTGGACTCGCGTACTTATTACCATTGCAATGATTGCGGTAAAAATCTCCACTCCCCTTACACTTACATCTGGCATATTCGAATTCACACCGGTGAACGACCATACGTTTGTGATTTATGCGGTAAACAATTCAGAGTTTCGCAAGGTTTGGTTCGACATCTCCGTGAAACACATGCTGGTATCAAGAACTTCCCGTGCGATCTATGTGGTCGCATGTTTGCGACAAGGCGGAACGTTGAAGAACACCGGCGTATTCACACGAACGAACGACCGTACATTTGTGACTTGTGCGGAAAAGCGTTCAAACAAAAAGCGTCGTTGTTCGTGCATAACCGCTCACATACGGATAGTTTTCCGTTCAAATGCAGCTATTGCAATCAAGGCTTTCGAACGCGACCACCATTGTTGGTTCACGTTACCAGACACACAGGCGAAAAGCCCTATCCCTGTGATATTTGCGGACGGTGTTTTCGAATTAAATATGAGCTGAAACGGCATAGATTGATCCATTCGGATGATAAACCGTTTAGTTGTACGGATTGCGGATTAAGTTTTAGACAGAAACGCTATTTGAGGAATCATAATAAGATTAATCATAATAGGCCGACACCGTAA
- Protein Sequence
- MSEELSSGELISAEEPIIHLTENGIEGFEILCRLCANSSDHLISIYSEEGITNDLAEKMNLYLPVKVAKLDILPLQCCFQCASTVLAWHELVVASVEADRRLRDIQFEVEKQLAGDELPGEAAEPGTSLTEEVEQNGQEHECTEPLKKQSKPQHFKTIEGLTSLNISTKVKTFNFEKSKTTINEKISYNLNNKSENSNATSELDKNSKIINDINSSKFETFKTTETSKPSVQLNRIEFEFNQSNNLLNDQSKTINHNLNIRISNTSENAEIYGLDLQKPVKKTHKCPECQKIFIQKPSLIRHLRIHRNERPYTCHVCGKGFRDESGLNRHIRHVHFRSKSFSCDICGDSFASAATRDDHRRRHTKERPFVCQVCGKMFGAKANLFIHAKTHSDVFPFACSVCAKRFRRRQELIVHSTTHTGQKPYQCEDCGRMFRIRSLLASHRLVHTDLKPFVCKICGVGYRQMRPNDTASLSPFRQDDVEVDVKLVVPSNITPPRKRGRKPKHQTQESKDDTIKVESSPSDTDGQWIKTELVMEADDAINPFIADCELTEDMDVKISPPVSDSDDLDPEYDPGNETKTKTHHCATCGKSFRKIVQLRRHEKLCTNELKEDLFKEEYLEGDLDDMDRDPLDEFQDAEIFERKIKREYRCDYCPKMTVRREDLKDHVRTVHPEKFETFSMQRQRKRSKIDQEAVNRAKVVVDSRTYYHCNDCGKNLHSPYTYIWHIRIHTGERPYVCDLCGKQFRVSQGLVRHLRETHAGIKNFPCDLCGRMFATRRNVEEHRRIHTNERPYICDLCGKAFKQKASLFVHNRSHTDSFPFKCSYCNQGFRTRPPLLVHVTRHTGEKPYPCDICGRCFRIKYELKRHRLIHSDDKPFSCTDCGLSFRQKRYLRNHNKINHNRPTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -