Ning012641.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- -
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000268.1:128966-131491[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0029 0.23 12.0 9.3 1 23 124 146 124 146 0.98 2 24 0.0017 0.14 12.7 3.4 1 21 152 172 152 174 0.95 3 24 0.0012 0.094 13.2 4.4 1 23 180 202 180 202 0.97 4 24 0.00088 0.071 13.6 4.5 1 23 209 231 209 231 0.96 5 24 0.00062 0.05 14.1 3.0 1 23 237 259 237 259 0.97 6 24 0.00052 0.042 14.3 2.8 1 23 267 289 267 289 0.98 7 24 9e-07 7.3e-05 23.0 4.3 1 23 295 317 295 317 0.98 8 24 9.8e-05 0.008 16.6 1.1 2 23 324 345 323 345 0.98 9 24 1.4e-06 0.00011 22.4 1.9 1 23 351 373 351 373 0.98 10 24 1.6e-06 0.00013 22.2 4.9 1 23 379 401 379 401 0.98 11 24 0.00027 0.022 15.2 5.4 1 23 407 429 407 429 0.98 12 24 0.0046 0.38 11.3 2.0 1 23 433 456 433 456 0.97 13 24 0.003 0.24 11.9 0.6 2 23 463 485 463 485 0.96 14 24 0.63 51 4.6 2.4 1 16 491 506 491 508 0.93 15 24 1.1e-05 0.00088 19.6 2.2 1 23 550 572 550 572 0.97 16 24 4e-05 0.0032 17.8 2.5 1 23 578 600 578 600 0.98 17 24 8.2e-06 0.00067 20.0 0.3 1 23 606 628 606 628 0.98 18 24 8.1e-06 0.00066 20.0 3.3 1 23 636 658 636 658 0.99 19 24 0.0096 0.78 10.3 2.8 1 23 664 687 664 687 0.96 20 24 1.8e-06 0.00015 22.0 0.6 1 23 693 715 693 715 0.96 21 24 0.00032 0.026 15.0 3.6 3 23 723 743 721 743 0.96 22 24 0.00019 0.016 15.7 1.0 1 23 750 772 750 772 0.97 23 24 0.00018 0.014 15.8 0.7 3 23 780 801 779 801 0.95 24 24 0.00021 0.017 15.5 1.8 1 23 810 832 810 832 0.97
Sequence Information
- Coding Sequence
- ATGACTATGGATCCCTCGCAATTTCCTCAAAATATTGTATATACTCGTATAAAACAAGAGTTTGATTCAGAAGATGATGCTCCAATTTTATCTATCAGGACACGGGATGATCTTTTAAAAGAATATCGAAATAATAAAGAATTTATATATAAAGCAAGCGAATATGCGGTGAAGATAAAAGAAGAAATAAGCAAAGAGATTCAGGAAAAAGAATACAATCACGAAGTGAAAATTCTAAAACCGGAAATCCTATCTGTCTTATCCGTTTCGTTGGATGAATTTTCGCATGATGAAACCATCAAAATCAAAGTCGAACCAAACAAAAAAGATATACAAACTCGGATCACAAATGACCCAACTTATAAGCCCTTCTCATGTCACTTATGTCGAAGAACATTTCGGTTTCAAAGCAGTAAAATGCATCACATGCGGCGACATGCAGCGCAAAAGAATTACAATTGCAAACAATGCAAAACGACATTCTCCAAATTGTCTGCCCTTGTGTTACATATGAACTGCCATAAGAGTAGGCGACCATATTTTTGTCCATTTTGTAAACAATGCTACGCAAGTTCCGGGTTTTTAAAGCGGCATTTATTTACGCATTCAAAAAAACAAAAAATGTACTCTTGTCGATTTTGTAAAAAAGAATTTTACCGAGCCCAACATCTACAACGACACGAATACATTCATACGAATACCAAATCATTTGCTTGTTCTGAATGTGATAAGCTATTTATATGTCAAGATTATTTAAATAAACACATGAAACGGCATAGTATCAAACCAGAAAAACTTTATAGTTGTGATATATGTCATAAAACATTCTTAAACTTTTCAGTTTTATCCGAACACATGCGCCGACATTCAGGAGAACGGCCATTCACGTGTAAAATATGCGAAAAATCATTTCATAGTAAATCAGATTTGAATAAACATACACGAATTCACGGAGGAGTACGTAATATAAAATGCACAACTTGCGAGCGAAGATTTTACACCGAATCTGATATGATGGTTCACTTAAAAACGCATTCAGACTCAAAAAACTATAACTGTACAATGTGTGATCGTAAATTTAATTATTCTTCAGAACTAGCCCGACATACACGTATGCACACCGGAGAAAAACCATTTATTTGTAAAGTTTGTAATAAAAATTTCACTAGTACATCACATTTATACCGCCATTTACGAACGCACACCACTGAAACGCAACACACATGTGAAGTTTGTCACAAGCGCTTTAAACGACTGCCATTTTTAGAAAAACACCGCGAAACTCATAACAAAACTTACAAATGCACAGAATGTAATCTAGAAATGCCAAATCACGACGAATTAAAGAAACATAAACGCAATTTACATTTTGATGTTAAAGCTGGGACTTGTGAATATTGTAAGAAAATTTTCAAACTCGGTACCAGTCTTAAAGAACATGTAATGCGCGTTCACACAGGGGAACGACCATTTCCATGTGGTCAATGCTGCAAAAGTTTCTATAATTCATCTAATTTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGAAACGCCATTGTAAAATTCATTTTCGGGATAATTTAGTTAAACCGTTTGATTGTAAACAGTGTACTAAAGCATTTCGATCTAAATACGAGCTGAAATTGCATGTGAATCGACATCAGGGGGTCAAACCGCATAAGTGTGAAGTTTGTTCGAAATCATTCGCATCTACGCAACAATTGGTGCGCCATTTTAGAATTCATACTGGCGAACGGCCATATTCTTGCAAAATATGCCAGGAAAAATTCGTTAGAGCTTCCGTGCTTGAAACACATATGCTTAGTCATGGGTTTAATCGCGTTTTAAAGTATGAATGTACACATTGTGATAAAAAATTCACTAATAAACGAATACTTTTACGTCACATCCGTATTCATACCGATGAACGGCCTTATCCGTGCGATTGTTGTTCGTTGAAATTTAAAAGCAAAGATGAAATGCAACGACATGTTAAAAAGATACATACAAATAAACGTCCGTTTAAGTGCGATGAGTGTGATAAGAGCTTCGTGACGCAAGGCGAATATAATCGACATAAGATTGCTCATATTGGAGTTCGACGGCATTTGTGTACGAATTGTGATAAGTCGTTTTTGTATTCGAATGAGCTGACACGGCATATGAAATCACATTCTGACGACGCTATCAAATACTTTTGTAATGTTTGTGATAAAGGTTTTAAGACGAGTACGATATTGAAAACACATGTGAAAATACATGAAAACAAAATTAAAAACTCTTGTGATGATTTTTGTGGGAAAATCTATAAAAAAATTAGTTATTTAGAAAAGCACATGACTACTCATAATGAAAATATTAAGATTAAGGAGTATAATTGTAAAGTATGTGATAAAAGTTATAAAAGTCGGTTTTTAATTAGAAAACATGAAGCTACACATAATGGTGATCCTGTAGATGTTAAATATTAA
- Protein Sequence
- MTMDPSQFPQNIVYTRIKQEFDSEDDAPILSIRTRDDLLKEYRNNKEFIYKASEYAVKIKEEISKEIQEKEYNHEVKILKPEILSVLSVSLDEFSHDETIKIKVEPNKKDIQTRITNDPTYKPFSCHLCRRTFRFQSSKMHHMRRHAAQKNYNCKQCKTTFSKLSALVLHMNCHKSRRPYFCPFCKQCYASSGFLKRHLFTHSKKQKMYSCRFCKKEFYRAQHLQRHEYIHTNTKSFACSECDKLFICQDYLNKHMKRHSIKPEKLYSCDICHKTFLNFSVLSEHMRRHSGERPFTCKICEKSFHSKSDLNKHTRIHGGVRNIKCTTCERRFYTESDMMVHLKTHSDSKNYNCTMCDRKFNYSSELARHTRMHTGEKPFICKVCNKNFTSTSHLYRHLRTHTTETQHTCEVCHKRFKRLPFLEKHRETHNKTYKCTECNLEMPNHDELKKHKRNLHFDVKAGTCEYCKKIFKLGTSLKEHVMRVHTGERPFPCGQCCKSFYNSSNLAXXXXXXXXXXXXXXXXXXXXXXXXXXMKRHCKIHFRDNLVKPFDCKQCTKAFRSKYELKLHVNRHQGVKPHKCEVCSKSFASTQQLVRHFRIHTGERPYSCKICQEKFVRASVLETHMLSHGFNRVLKYECTHCDKKFTNKRILLRHIRIHTDERPYPCDCCSLKFKSKDEMQRHVKKIHTNKRPFKCDECDKSFVTQGEYNRHKIAHIGVRRHLCTNCDKSFLYSNELTRHMKSHSDDAIKYFCNVCDKGFKTSTILKTHVKIHENKIKNSCDDFCGKIYKKISYLEKHMTTHNENIKIKEYNCKVCDKSYKSRFLIRKHEATHNGDPVDVKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -