Ning010812.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria ingens
Gene Symbol
-
Assembly
GCA_018344505.1
Location
JADQWA010000290.1:65424-77202[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 54 0.0078 0.64 10.6 1.4 1 23 274 296 274 296 0.99
2 54 0.033 2.7 8.6 5.1 1 23 301 323 301 323 0.96
3 54 0.00089 0.072 13.6 4.7 1 23 330 352 330 352 0.98
4 54 0.011 0.89 10.1 3.1 1 23 358 381 358 381 0.96
5 54 0.00049 0.04 14.4 3.2 1 23 386 408 386 408 0.98
6 54 5.9e-05 0.0047 17.3 1.8 2 23 421 442 420 442 0.97
7 54 0.019 1.5 9.4 2.4 1 21 447 467 447 469 0.94
8 54 1.5e-05 0.0012 19.2 5.3 1 23 475 497 475 497 0.97
9 54 0.00014 0.011 16.1 0.2 3 23 505 525 503 525 0.97
10 54 0.0025 0.2 12.2 2.0 1 23 531 554 531 554 0.92
11 54 0.0081 0.65 10.6 0.7 2 23 571 593 570 593 0.97
12 54 4.6e-05 0.0037 17.6 0.1 1 23 598 620 598 620 0.99
13 54 0.00015 0.012 16.0 2.2 1 23 626 648 626 648 0.98
14 54 9.1e-05 0.0074 16.7 4.6 1 23 654 676 654 676 0.98
15 54 2.6e-05 0.0021 18.4 4.9 1 23 708 730 708 730 0.98
16 54 0.00053 0.043 14.3 0.6 1 23 735 757 735 757 0.96
17 54 2.7e-06 0.00022 21.5 2.5 1 23 763 785 763 785 0.98
18 54 0.042 3.4 8.3 0.1 3 23 793 814 791 814 0.90
19 54 0.00025 0.02 15.3 1.5 2 23 820 841 819 841 0.96
20 54 0.00028 0.023 15.1 0.4 1 23 850 872 850 872 0.97
21 54 1.3 1e+02 3.6 0.2 1 12 877 888 877 891 0.83
22 54 7.6e-05 0.0061 16.9 0.3 2 23 897 918 896 918 0.97
23 54 0.0018 0.14 12.6 6.2 1 23 923 945 923 945 0.98
24 54 4.9e-05 0.004 17.5 0.9 1 23 976 998 976 998 0.98
25 54 0.00026 0.021 15.2 0.8 1 21 1009 1029 1009 1030 0.95
26 54 0.00012 0.0093 16.4 6.2 1 23 1037 1059 1037 1059 0.99
27 54 1e-05 0.00084 19.7 0.2 2 23 1066 1088 1065 1088 0.96
28 54 4.5e-06 0.00036 20.8 4.7 1 23 1096 1118 1096 1118 0.98
29 54 0.0045 0.37 11.3 1.0 1 23 1127 1149 1127 1149 0.97
30 54 3 2.4e+02 2.5 0.1 1 9 1154 1162 1154 1170 0.92
31 54 0.86 70 4.2 6.5 2 23 1217 1238 1216 1238 0.92
32 54 0.0033 0.27 11.8 0.7 1 21 1249 1269 1249 1270 0.93
33 54 0.00014 0.011 16.1 9.8 2 23 1278 1299 1277 1299 0.97
34 54 0.0016 0.13 12.8 0.1 2 23 1306 1328 1305 1328 0.94
35 54 4.5e-06 0.00037 20.8 6.2 1 23 1335 1357 1335 1357 0.99
36 54 5.2e-05 0.0042 17.5 2.3 1 23 1366 1388 1366 1388 0.98
37 54 0.00013 0.01 16.3 0.2 1 23 1393 1415 1393 1415 0.98
38 54 0.00023 0.019 15.4 3.6 1 23 1421 1443 1421 1443 0.97
39 54 3.4e-07 2.7e-05 24.3 0.6 1 23 1449 1471 1449 1471 0.98
40 54 0.0011 0.089 13.3 2.0 1 23 1477 1499 1477 1499 0.98
41 54 0.034 2.8 8.6 3.0 2 23 1515 1536 1514 1536 0.97
42 54 0.016 1.3 9.6 3.3 2 23 1542 1563 1541 1563 0.89
43 54 8.8e-05 0.0071 16.7 2.1 1 23 1569 1591 1569 1591 0.97
44 54 0.012 1 10.0 1.8 1 23 1597 1620 1597 1620 0.97
45 54 4e-06 0.00032 21.0 2.6 1 23 1625 1647 1625 1647 0.98
46 54 0.34 27 5.5 0.1 1 20 1658 1677 1658 1679 0.94
47 54 4.2e-06 0.00034 20.9 4.2 1 23 1687 1709 1687 1709 0.98
48 54 0.099 8 7.1 1.8 2 23 1716 1738 1715 1738 0.94
49 54 0.0015 0.12 12.9 0.9 2 23 1744 1765 1743 1765 0.97
50 54 0.00024 0.02 15.3 1.8 1 23 1774 1796 1774 1796 0.98
51 54 4.5e-05 0.0036 17.7 0.1 1 23 1801 1823 1801 1823 0.98
52 54 2.4e-05 0.002 18.5 0.3 1 20 1829 1848 1829 1851 0.93
53 54 1.2e-07 1e-05 25.7 2.9 1 23 1857 1879 1857 1879 0.98
54 54 8.5e-05 0.0069 16.8 3.9 1 23 1885 1907 1885 1907 0.98

Sequence Information

Coding Sequence
ATGACTAGTTCATTAGGTTATATGGAACTATGTAGATTATGTTTGGTAAAAGATAAAGTGACCGTGCCGATTTTTGGTGATACGAATGACGTGCGGCAAATATTCTTAAAGATTACGGCTTGTTTGCCTGTGAAGGTATCTCGTGACGATAATTTACCTAAAAAAATCTGCGACACATGTCTCTACAAAATCGACTTACTTTACCAATTCTGGAACACAACAATAAACGCAGAAAAACAATTAATACAATGGCTGAACGAGATTGGGGTAGATGCAAAAAATGTCGACGCTTCTTTACAAATGTTACCGCAATCCCATGCACATCCTCATGCGATGCAAGAAGAAATCATGATGAAAGAAGAACGCATCGAATCCGAAACCAAGGACGGCGCAACCGGATTCTCGAATATGTATACTGAATATCCGTATCAGAATCCCGAAAATAACTTCGACACGTCGTCAGTAGTAGAAGAAACAACAACTGCTAAAAGAAAAACTCGGGGCCGACCAGCGGGGAAGAAAAAAGCTAAAGTTGTTATTCCAGAATCGGAAGATGAGGACAGTATTGGTAGTGATCGACTCGGGAATGACGATACTAACGATTCCGACTCTGACGGTGGCAAAATCGCTAAGCAAGAAGCAGATTCTGATGAAGATTATGTCGATAATCCCGAATCCTTAGAACCTACAACATTCGTAGATGTACCATCGGCAGCAGATGCAGAACAACCGGGCCCTTCAGGCCTTAGCAAACCGGCTACGATCACCGCGGGCACTTCTGATCAAGGGGCGAAGTTCCACTTGACCCCAACTGGCGCCTATAAATGCGAACATTGCGCAAAAATAATACCGACACGAGCGCGTTTCGCGCGTCATCTACGGCGACACACCGGCCGCAAACACACTTGCCTCACGTGCGCAAAAACATTCTGTTTCGAAAGCGAATTGCTCAAACATCAAACGCTCCACATGAGCCCTACGCTGGGCTTTAACTGCTCAGTGTGCAATAAGTTATTTAAAACAGAGCATACGTTACGTTTACATACGCGCCGCCATGAAGGGAACTATACTTATCACTGTAAAGAATGTCAACGTGGATTTGTTTACACGAGTGAATATAAGTACCACGTAAACGTGTTTCATGGCCGACAAAGGCATAAATGTCCGGTGTGTCCTAAAGAATATGCCAGCCTTTCATTTTATAAGCATCACGTGCGTTCACATTCCGAAAATTTCAAAGCGAAAGAAGACTTGGAATTAAAGTGCCCGAATTGCCCGAAAACATTTGATGATAAATATAAATTTGCAAAGCATAAAACAACGCACGTTGTACAGAATTATGTGTGTCAAATTTGCGGTAAGACTCTAACATCAAGGAACGGCTTTTACGATCATTTAAAATGCCATTCGGATGAGAAGCCGCATGTGTGTGAGCACTGCCATAAAGGTTTCAAACGACCGTACGAGTTAACAATCCATTTGAGGAATCACACTCAAGAAAAGCCTTACGGCTGCAAATATTGCGGACGCAGATTCCCAAGGCGCGGAGCACTGGTGTTGCATGAACGTCTCCACTCCGGGGAACGCCCTTTTTCGTGTGATATCTGCCAAAAAGCGTACACTTCCAAATCGGGTGTGCAATCACATCGAGATCACAAACACGGCACGAAAATCAACAAAGAACTTAAAAAGTCCGAGAACGTAACACAGAAATGCTCAAAATGTGATTTGACATTCTTGAGTAGAGGTGGCCTTAATAGTCACATTAAAATTAAACATGATAATATTTATTACACGTGTGAAATATGTGGCAGAGGGCTAGCTTCGAAGATAAGCCTCAAAGATCATATGATGGTCCATAGTGGCGAGAAGCCATATTCATGTGATTTGTGCTCCAAGACTTTTAATAAACTGTTTTTGTTGAACACCCATCGAAGAGTGCATACTGGGGAAAAACCGTTTTCTTGTAAAATTTGTTGTAAAAAATTCACTCAACAAAGTTCGTTGATTATACATATGCGCTATCACACGGGCGAACGGCCTTATAAGCCGCGGAGGAAGAAGAAACGTCTAAAACGCCGCCGAAGAGCACCTTCGCCCATCACCGACATCAAAACCGCTCATAAATGCCACGTTTGCGAGAAAATGTTCACGAAACGTGCAAATTTACTACGCCACCAAGCCCGGCATTTTGAGAAAAAATACCCGTGCGACGCATGCTCACGGGTCTTTCGGTCATATTCAGATCTAACCAGCCACAAATTGAACCACTGCATAGATCGTATCTACGATTGTGAGTTATGCGATAAAAAATTTAAGAGCAAATCGAACTTGACGTTACATAGTCGTCGACACACGAAAACCTACTCAATACGGTGTGTGCCATGCAACAAAGGGTTTTACACGAAAGCCGAATACCAAATACACGTGCAAGTTTCGCATACGAAACAACGCGTTACATGTGTGCATTGCTCAAAGACATTCGCAACTCAAGCTAATTATGGCCGGCATTTAAAATTGCATGATCCGAATATTCATTTGAATGAATTCACTTGTCCGACATGCGGAAAAATATACCATAATCGTGATGCTTGGCGTGCGCACGTTGCGCGGCACGCGAACAATTGTTTTGTTTGTGACGTTTGCGGCAAAGCACTAACGTTCTCGAAGAGTCCGGAAGCACGAATAAAATGCGATATATGCTCGGAAGAATTCGCAAATCGCAAGAAACTCACTACCCACATGCTCATCCATACGGTGCGGACGTTTAGCTGTGACAATTGTGATAAAACATTCCATTTGGCGACCCATCTGAAACAACACAAACAGACTCATGTGATACCGTGCACGAAATGCGCTTTAATGTTTTCGAATCATTTAAAATATCGTGAACACTGCAAAGAAACACACAAAAGTGATTCGGGGTATAAATGTTTGGACTGTAATCGCGTGTTTACGAATGCGACTGGGTATAAAATACATTTATCAAAACATGACCCACTGCTAGTGAAGAATATGGTTACTTATTCGTGCGACGAATGCCAAAAAGTGTTCACATTATCTCAACATTTAGAAGCGCACAAGAAAAATAACTGTGTTGATGTACTGTACAAGTGTGATCATTGTCCAAAAATGTTCAGATATAAACACTACTTAGCTGTTCACAATCGTAGACACACCAATAATTATGTGGTCACTTGTAAAGATTGCGGCAAAGGTTTTTATACGTGGCGCGAGTATCGTGTTCACATCCAAGTATCACATACGATCCAGAATAAATCACAATTCAAATGTGACCACTGTCCCAAAACGTTCTCACAAAAAGCTTACTATACCCGACATCTAAAACTACACGATCCAAATCAGCTTTTATTGGAATATATTTGCCCAACATGTGAACAAAAGTTCCACAATCGTGATACGTGGCGTGTTCACGTTGCCCGTCATGGAAACACTGTGTTTGTGTGTGATGTTTGTGGCAAAACTCCAGTATATTTGTCATCCATGACTAAAGTAACCCAAGAATCTCTTGACAGGGCGAAGACTTCTGTACTCATAAAAACGGCATTATGCGATCCAGTCTGCAAGGAATTGGTCGAAGATTCTAAACAAACGGAAGCACCTCTGTTCAAAACCGACCGAAAGCTAACTTGTAAACATTGTTCAAAAAAATTTAAAACTGCAAGAGCTCACAAACTGCATACATCATCGCACGATCCGCTTTTCGTACGCAAAATTAAAATGCATATCTGCGACAAATGCGCAAAAGAATTTAAAAGACCCGTCGATTTAAAGTTGCACAAGAAAAACAACTGCGTTGACGAAATCCTCAGATGTGAACACTGTCCTAAAACGTTCAAACACCGCTATTATTTAAAACACCACACGCGCCGACATACAGACAACTTCGTTGTAGTCTGTAAACAATGCGGTAAAGGTTTTATAACAATGGGTGAATATCGTGTTCACGTGAAAGGAACACACGCTAAAATACCCGAGAGTTACCAATGTGAACACTGTCGAAAAGTATTTTCACAAAAAGACTACTATAAGAAACATTTAAAAACTCATGATCCTCATGCAGTGGTTATTGAGTACACGTGTTCACATTGCGAGAAAGTGTTCACCAAGCGCGACAATTGGCGTATGCATGTGGCAAGGCATGAAAATCATTCTTTTGTGTGTTATGTGTGCGGGAAAAATCTAACGACTTTGGCCAGTTTGAAGGATCATGTTCGCGTTCACACTGGTGATAAACCATTTTGTTGTACATCGTGCGGCAAAACTTTCCGTACAAAAAAGCTACTTGACACTCATGTCGCGACGCATGTCAATGAGAAGAGGTTCAGTTGTGTTGAGTGCGGCAAGAGTTTTACTCAACAAAGTACTTTGATTGTACATCGGCGACTTCACACTGGTGAACGTCCGTATGCTTGCACTATATGTCAAATGCGATTTTATACGAAAACTTTAATGAAAACTCATGTTAAATCTCATGGTTTTACTTTAGCTGATGTGAAGAAGACAACTCCGGCACGCCTAACATGCGATATATGCTCGAAACAATTCCTCGATCGCACCAAATTTAACAAACACAAACGGTCGCACAAGCCACGGAAACTATCATGTAAACATTGCGATAAAAAGTTCCACTTCGAAAACCAATTGCGAGCGCACGAAGTGGCGCACAGTGACGACAAACCGTTCGCTTGCAGCCTGTGCGACAAAAAGTTCAAGCTTCAGAAGAGTTTGGAAATGCACCAGAAACGACACATGAACGACTATAAATTCAAGTGTCTCGAATGCGATAAAGGCTTCTATGAAAAACATGTGTACAGCGAACATATTAAAGTGAATCATGTCGGATTTCGACACAAGTGCGACAAATGTGGTAAAGCATTTAAAACGCCTAGTTCGTATAAACTCCATGTCCAGTCACATGATCCAAGTTTTGTGAAACCAGCCAAAAAACACCAATGCGATGTGTGCATGAAGGTGCTTCGCACTGCTATTGATTTGACCACGCACAAAGACAACAATTGTATTGATGCGCCGATTTATCCGTGTGATATGTGCGATAAAAAGTTCAAACACAAATATAACTTGACCATACACAGTCGAAGACACACAACCAATTATGTAGTCAAATGTGAACATTGCGATAAAGGGTTCTTCACAACTGGAGAACATTACGACCACATTCGCGTTGTTCATACAAAAGAACGAATCAAGTGTGTACATTGTCCGAATACATTTGCGACCCAAGCCAATTATGGACGACATTTAAAACTGCATGACCCAAACATGCATTTGATCGAATACACATGTCCGAAGTGTCAGAAAATGTTCCATAATCGAGACGCTTGGCGAACACACGTCGCTAGACATGAGAATAATTCGTTTGTGTGTTATGTGTGCGGAAAAACATTGACCACGGCCGCAAGTTTGAGAGACCACGCCCGTGTTCATACTGGTGATAAACCGTTTCCATGCACCACATGTGGCAAAACATTCCGGACGGCGAATTTATTGAAGATTCATCAACCGATTCACAAGAATGAGAAGCCGTTTATTTGTAGCGAATGCGGCAAATGTTTTACGCAAAAAAGCAGTTTGACGGTTCATCGCCGGATTCACACGGGCGAACGCCCCTATCCGTGCGATATCTGTCACAAACGATTTTATACGAAAACTTTGATGAGAACTCATGTTAAAACTCATGGTTTATCTATGGCTGATCTTTAA
Protein Sequence
MTSSLGYMELCRLCLVKDKVTVPIFGDTNDVRQIFLKITACLPVKVSRDDNLPKKICDTCLYKIDLLYQFWNTTINAEKQLIQWLNEIGVDAKNVDASLQMLPQSHAHPHAMQEEIMMKEERIESETKDGATGFSNMYTEYPYQNPENNFDTSSVVEETTTAKRKTRGRPAGKKKAKVVIPESEDEDSIGSDRLGNDDTNDSDSDGGKIAKQEADSDEDYVDNPESLEPTTFVDVPSAADAEQPGPSGLSKPATITAGTSDQGAKFHLTPTGAYKCEHCAKIIPTRARFARHLRRHTGRKHTCLTCAKTFCFESELLKHQTLHMSPTLGFNCSVCNKLFKTEHTLRLHTRRHEGNYTYHCKECQRGFVYTSEYKYHVNVFHGRQRHKCPVCPKEYASLSFYKHHVRSHSENFKAKEDLELKCPNCPKTFDDKYKFAKHKTTHVVQNYVCQICGKTLTSRNGFYDHLKCHSDEKPHVCEHCHKGFKRPYELTIHLRNHTQEKPYGCKYCGRRFPRRGALVLHERLHSGERPFSCDICQKAYTSKSGVQSHRDHKHGTKINKELKKSENVTQKCSKCDLTFLSRGGLNSHIKIKHDNIYYTCEICGRGLASKISLKDHMMVHSGEKPYSCDLCSKTFNKLFLLNTHRRVHTGEKPFSCKICCKKFTQQSSLIIHMRYHTGERPYKPRRKKKRLKRRRRAPSPITDIKTAHKCHVCEKMFTKRANLLRHQARHFEKKYPCDACSRVFRSYSDLTSHKLNHCIDRIYDCELCDKKFKSKSNLTLHSRRHTKTYSIRCVPCNKGFYTKAEYQIHVQVSHTKQRVTCVHCSKTFATQANYGRHLKLHDPNIHLNEFTCPTCGKIYHNRDAWRAHVARHANNCFVCDVCGKALTFSKSPEARIKCDICSEEFANRKKLTTHMLIHTVRTFSCDNCDKTFHLATHLKQHKQTHVIPCTKCALMFSNHLKYREHCKETHKSDSGYKCLDCNRVFTNATGYKIHLSKHDPLLVKNMVTYSCDECQKVFTLSQHLEAHKKNNCVDVLYKCDHCPKMFRYKHYLAVHNRRHTNNYVVTCKDCGKGFYTWREYRVHIQVSHTIQNKSQFKCDHCPKTFSQKAYYTRHLKLHDPNQLLLEYICPTCEQKFHNRDTWRVHVARHGNTVFVCDVCGKTPVYLSSMTKVTQESLDRAKTSVLIKTALCDPVCKELVEDSKQTEAPLFKTDRKLTCKHCSKKFKTARAHKLHTSSHDPLFVRKIKMHICDKCAKEFKRPVDLKLHKKNNCVDEILRCEHCPKTFKHRYYLKHHTRRHTDNFVVVCKQCGKGFITMGEYRVHVKGTHAKIPESYQCEHCRKVFSQKDYYKKHLKTHDPHAVVIEYTCSHCEKVFTKRDNWRMHVARHENHSFVCYVCGKNLTTLASLKDHVRVHTGDKPFCCTSCGKTFRTKKLLDTHVATHVNEKRFSCVECGKSFTQQSTLIVHRRLHTGERPYACTICQMRFYTKTLMKTHVKSHGFTLADVKKTTPARLTCDICSKQFLDRTKFNKHKRSHKPRKLSCKHCDKKFHFENQLRAHEVAHSDDKPFACSLCDKKFKLQKSLEMHQKRHMNDYKFKCLECDKGFYEKHVYSEHIKVNHVGFRHKCDKCGKAFKTPSSYKLHVQSHDPSFVKPAKKHQCDVCMKVLRTAIDLTTHKDNNCIDAPIYPCDMCDKKFKHKYNLTIHSRRHTTNYVVKCEHCDKGFFTTGEHYDHIRVVHTKERIKCVHCPNTFATQANYGRHLKLHDPNMHLIEYTCPKCQKMFHNRDAWRTHVARHENNSFVCYVCGKTLTTAASLRDHARVHTGDKPFPCTTCGKTFRTANLLKIHQPIHKNEKPFICSECGKCFTQKSSLTVHRRIHTGERPYPCDICHKRFYTKTLMRTHVKTHGLSMADL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-