Ning005896.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- bab2
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000297.1:626776-633837[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6 9.8e+03 -3.6 0.2 6 20 312 327 312 327 0.69 2 2 6.2e-17 9.2e-14 50.9 0.0 2 45 382 426 381 426 0.95
Sequence Information
- Coding Sequence
- ATGACGATGCAACAGTTTTGTTTACGATGGAACAACCATCAACCGAATTTCATTTCGGTGTTCTCCAGTCTTCTGAATAGTGAATCTCTTGTTGATGTTACGTTAGCAGCTGAAGGAAGACATTTGCAAGCACACAAAGTTGTTTTATCCGCTTGTAGTTCTTATTTTCAGTCGTTATTTACAATAAATCCTTGTCAACATCCAATAGTAATACTGAAAGATGTGAAATTCATTGACTTGAAGGTGATGGTGGATTTTATGTACTATGGTGAAGTGAATGTTTCTCAAGAACAATTGCCACATATATTAAAAACAGCAGAGATGTTAAAAATCAAAGGGCTAGCGGAAATGCCTGATTCCACATCTTTGACGAAATCACAAAGTGGCTCATCAGAAAAAGCAGAGTTGTTAACACCTGGCGATTCAAATTGGAGTTCAGACGCACAAAGAAGATCACTGTCGCCATCGCCGTGTCCTCTATCACCTGGTTCTAGAAGAAAAAGATTAAGAAAATCATCGACTGGTTCAGGATCAGGCTCCACTGAACGCACATCAGAAGAACATCCCAATGAAGTACATTTAACATCACCCGGTGGAAGTGTAGTCAGTACGAATATAAAACAAGATCCTGGATTTACACCCGAGTGTACAACCATAAAACAGCATAGCAGTGATTCAGAACCGCACAAAGATAGTTCACAAGAAAGTGCGGAAGGAGAAATACCGCATCAAATAACTCTACAAATACCACAACAAGCCGACGTAAGTCTGCAAAACATGGAGCCTGCACAGATTGATATGCCTGGACCTTCCACGTCCACAGCATGTACTCAACCACCAGTACCAGGGTTGCAATGGGCTTTTCTGGAACACACCTACCCCCGATTCGCACTATCCTCATGTCATACAAGCATGGCACTCACCTCATCTGCTGCTGAAGCCGCTCAGTACAGTATGGCCGGTGGTGAAACATCAATATCATCATGTGCGCTGAACAGTAACGATACCGTACCAACAGCATCCGCAACTAGTCCTTGTCATAGCATATGCCAATCTCCTTGTACATCACCGTCACCGAATCAGAATTACAACAATCCGAATATAATATCAGTGAAACGAAAACGCAGTGTCAATCCGCAAGCCGATGAGAACTTCTTACGCGCTTTAGAGGCAGTCAGATTTGGCGGGATAGGATTTTGCAAAGCGGCGCGAATGTATGGAGTTAATAACCGAACCCTGTGGCTAGAATATAAAAAACGCGGGTATCCAATCAGTCGGCTTAGCATTAAAAGTAGAGTTAGACAAGATACACCAGCGCCGCAACAACAATCCCAAGAACAACAATCACAAATACCTACATCTGCGCCTTCTGAGACAACAAATCTAAATCATTCTCAGCCGGTCATTTGTCCGCCGCCTCATTCTGTTGCGATGATTGGTGCTTCTTTTCCGGCTGATTTTCAGCCCAACATTCAAAGAAATCAGTATCAAGATGCTATTATAGGTCCCTCTCCACCGCATATTACAACTGTACAAGGATTGAATTTCAATCCGATGTGA
- Protein Sequence
- MTMQQFCLRWNNHQPNFISVFSSLLNSESLVDVTLAAEGRHLQAHKVVLSACSSYFQSLFTINPCQHPIVILKDVKFIDLKVMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPDSTSLTKSQSGSSEKAELLTPGDSNWSSDAQRRSLSPSPCPLSPGSRRKRLRKSSTGSGSGSTERTSEEHPNEVHLTSPGGSVVSTNIKQDPGFTPECTTIKQHSSDSEPHKDSSQESAEGEIPHQITLQIPQQADVSLQNMEPAQIDMPGPSTSTACTQPPVPGLQWAFLEHTYPRFALSSCHTSMALTSSAAEAAQYSMAGGETSISSCALNSNDTVPTASATSPCHSICQSPCTSPSPNQNYNNPNIISVKRKRSVNPQADENFLRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPISRLSIKSRVRQDTPAPQQQSQEQQSQIPTSAPSETTNLNHSQPVICPPPHSVAMIGASFPADFQPNIQRNQYQDAIIGPSPPHITTVQGLNFNPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01040236;
- 90% Identity
- iTF_01040236;
- 80% Identity
- iTF_01040236;