Nbre012327.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000226.1:77021-80621[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.2 19 6.9 6.5 1 23 304 327 304 327 0.98 2 11 0.0015 0.14 13.6 1.1 1 23 527 550 527 550 0.94 3 11 0.12 11 7.6 0.2 2 19 610 629 610 631 0.93 4 11 1.7 1.6e+02 3.9 0.6 1 9 641 649 641 660 0.83 5 11 0.053 4.9 8.7 1.9 1 23 671 693 671 693 0.97 6 11 1.3e-06 0.00012 23.2 0.3 1 23 699 721 699 721 0.96 7 11 0.00038 0.035 15.4 3.8 3 23 738 759 736 759 0.93 8 11 0.00019 0.018 16.4 2.8 1 23 765 787 765 787 0.97 9 11 0.14 13 7.4 3.9 1 23 793 815 793 815 0.98 10 11 0.0013 0.12 13.7 1.8 1 23 821 844 821 844 0.96 11 11 0.019 1.7 10.1 0.7 1 23 851 873 851 873 0.97
Sequence Information
- Coding Sequence
- ATGAATGAAGAAGACACTGGTCCATTATTCAAATACACCCCGGAAATAAGTTCGCAATTTCTAATCCAATCCAATGAAAATCCGGAATTTGTTCAAGTTCCTGGAATATGCGATGATCTTCTACTAACCGGATTCGAAGATGGAACTGTGACTTGGACCCTAGGAGGTCTTCCAGTTTTACTAAACGAACAGCAACCATTGTTAGTTAATCAAATAAACACCGATTCTGAGCCTCAGCAAGAGTTGCTACAAGATATTTTAAGCCAAGCCGCAATCGAAATCGCTAATTCGGATGAGGCGGCATCGATAGAATGTCCATTAGAAATTCCAGATAAAGAATTCTTAACAAACAACGGTCTGTTCATCTCAAACGAACCCGATTTGCCGCAACAGTACGTGAAACACTCTGAATCCGCCGACGACGAAATACAGTCATCCGATGTCTCATCACAAGAAGCCTTCATCGACATCAACGGTTTATTAATCCCTCAAGAGTCCATTCTGAGCTTGAACAATGACGATCTATTGTTCAATATTGAACACGCACATCAACCGAGCTCttcaattaaatcaaacaaagcTAGAACACGTCGAAAAGTGCCGACACTGGTGCAAAATCAAGATGAAGAATTGCGTGTCGAAAAAAATCCTGAAACGGTGTTCACTTACGATGAACCACCGAATAATAAAGGCTTGGTGAAAGTATTGAATCTAGATGGAACCGTGTCGATGTTGAACGTAGACGGATTGTTAGCCGGCAATCGGCCTGTCTTGAAACAGATTTCAGATGTGACCGCAGACGAATTGTTCTTGAAAGATGAACATGATCTGACGTCAATTCAACCAGACTCAACAGTTATGAACGATGAAACGTTTAACATCGATGATTTCGCGACTATTATAACGGCGTACCAATGCAAAAAATGTGCGTTTACGTGTAATGATCAGAAATTGtttttgaaacattttaaaacgACACATATTCCAATTCGAACGGCTCCAGAACCGTTAGATACTTtagcaaaaataattactggAAGTACTCCTAGACCAGCTGAGCGTACACTAAATCAGTTTAAGATTCTAAATAGCGGTGAAATTGTAACACGTCTAACATTTCTACGAAATCCAAAGGATACAACATTTATTCTACCGGCGGAAGCAATTAAAACCGATGAACCAGAGTTTGAAATGAAAAACGCTGAACTAGAAATtctagaaaacaaaattaaaactgaaatattcaatatagaaaatagttttaaaattgaacCACCCGATACCCCGGTTCCAAATATCGATAACAACAATTCCGAGTTTCTGCACGTCTCAATCATTGATGATGACAATTTTGAGAAACGAATAATGCGCGTCAAGCGAAAGAAGAAAACTACGCCGatgtacaataataaaaaacaaatgattGCTAAACAACAGGGCTCTTATATTGGTGCCAGGAAAGAAATTCATGAGCAGAGCAACAGAAATTCTCTACTGCAGCTGGACAACGATGAGCCTCGGAGTGCTTCCAGAGATGTTCGTTTATCCGACCCGAAAGCACTGCGTAAGCAGTTGTTATATTTGTGTAGCGACTGCGGGAAGGAGTTTTCGACAGTTGAAGATTGCAGAACGCATATGATCAGGATTCACAAATTTAGAAATGTTGAAGCTGTCAGCAAACAACCGGATGAATCCAAAGAAGCGCTAGGAATGATTGATAATCCTGTAACCGAATCGGAAGACGGTGATGATAACGATGAGAAGAACAAAAATAAGAAGATAATCGACAAATTTCTCACGCAAGATATTATGAAACCGCGTAGAAATAAATGTACCAAGACTGGATGCCAATATAGGTTTGCAAAACCTGAATTGCTAGCCCGACACGAATCATGTCACGTAGAAGGAGTGCGGGGAGTATTTAAATGTCCCGAATGTGGAGAAAAGCAGACATCCTGGCGTTTATGCAGTGTACATCTTTGGAGATGCCATCAATTGGACGTAGATCTTTACGCGTGTCCACTGTGTACTTTTAAAGGCTCTACATTTGTAAAACTGAAACACCACTTGAAAATTCACGGCGACGAACGTGATTATATTTGCACCGAATGCGACCGCGCTTTCAAACAACCTTCCCAACTTCGGAATCACCGCGTGATTCATCTGGACCCCGCGATCCATGAAGTACCGCATTGGTATATTCAGAAACACTGCGACAAATGCGGTAAAATGTTTGCGGATTCCAAATGCCTGAAGAAACATGTGCAGGCGGTCCACAGCAAATTAAAGCCCTTCATTTGTAATGTTTGTGGGCATACGTGTGCACGCAAAGCCATGCTGCAGATGCATTTGCGGCAGCATACCGGCGAGAAACCGTACTCGTGCAAGTTATGCTACTACAAAACTGGCGATCATAATTCATTGCGTCGACATGAGATGCGGCATACTGGGGCTCGGCCGTACAAGTGTCCCCATTGCGATTACACAGCCATCCAGAGCAACTCGTACAAGAATCATCTAGCTAGCAAACATCCTGGAATGAGCGGTTCTTTCAGTTGCACCGACTGCAACTTCAAAACAGTCAACGAGGACAGTTTCGTTAGTCACCTGAACGATCACAAGATCGGATTGATCGAAAAATCGGATGGTATGGTTTTTTTTCCTTCAGCTTTTGTACAATACAGTTTTACAGTATTAGTTAAACTTGCTGTAGAATCCGATCCGAAAATTTCACGTATCCGAATCTTGTACGACCAGTCGAACTTAACCACTGCCGATATAACTACAGACAATAAAAACGGTATCATCATTcaattgccaaattcaaaaaatttagatttgGAAGATGATGAAACGCAAAATTGTTTCTTGTCGCTAGGCGATTTGAATGATGAACAAACGGTGGACACCGGTGGGATAACAATTCCCGCAGATCCCGACCCGATGAATATgtaa
- Protein Sequence
- MNEEDTGPLFKYTPEISSQFLIQSNENPEFVQVPGICDDLLLTGFEDGTVTWTLGGLPVLLNEQQPLLVNQINTDSEPQQELLQDILSQAAIEIANSDEAASIECPLEIPDKEFLTNNGLFISNEPDLPQQYVKHSESADDEIQSSDVSSQEAFIDINGLLIPQESILSLNNDDLLFNIEHAHQPSSSIKSNKARTRRKVPTLVQNQDEELRVEKNPETVFTYDEPPNNKGLVKVLNLDGTVSMLNVDGLLAGNRPVLKQISDVTADELFLKDEHDLTSIQPDSTVMNDETFNIDDFATIITAYQCKKCAFTCNDQKLFLKHFKTTHIPIRTAPEPLDTLAKIITGSTPRPAERTLNQFKILNSGEIVTRLTFLRNPKDTTFILPAEAIKTDEPEFEMKNAELEILENKIKTEIFNIENSFKIEPPDTPVPNIDNNNSEFLHVSIIDDDNFEKRIMRVKRKKKTTPMYNNKKQMIAKQQGSYIGARKEIHEQSNRNSLLQLDNDEPRSASRDVRLSDPKALRKQLLYLCSDCGKEFSTVEDCRTHMIRIHKFRNVEAVSKQPDESKEALGMIDNPVTESEDGDDNDEKNKNKKIIDKFLTQDIMKPRRNKCTKTGCQYRFAKPELLARHESCHVEGVRGVFKCPECGEKQTSWRLCSVHLWRCHQLDVDLYACPLCTFKGSTFVKLKHHLKIHGDERDYICTECDRAFKQPSQLRNHRVIHLDPAIHEVPHWYIQKHCDKCGKMFADSKCLKKHVQAVHSKLKPFICNVCGHTCARKAMLQMHLRQHTGEKPYSCKLCYYKTGDHNSLRRHEMRHTGARPYKCPHCDYTAIQSNSYKNHLASKHPGMSGSFSCTDCNFKTVNEDSFVSHLNDHKIGLIEKSDGMVFFPSAFVQYSFTVLVKLAVESDPKISRIRILYDQSNLTTADITTDNKNGIIIQLPNSKNLDLEDDETQNCFLSLGDLNDEQTVDTGGITIPADPDPMNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041260;
- 90% Identity
- iTF_01041260;
- 80% Identity
- -