Nbre001365.2
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000014.1:744360-747478[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0018 0.17 13.3 2.7 1 23 175 198 175 198 0.98 2 12 9.2e-05 0.0086 17.4 0.4 2 23 209 230 208 230 0.95 3 12 0.02 1.8 10.0 1.1 1 23 236 258 236 258 0.98 4 12 8.9 8.3e+02 1.7 0.2 3 12 266 275 265 286 0.77 5 12 0.054 5 8.7 0.8 1 23 298 321 298 321 0.94 6 12 0.098 9.2 7.9 0.5 1 20 808 827 808 828 0.93 7 12 0.00051 0.047 15.1 1.6 1 23 840 862 840 862 0.96 8 12 0.0069 0.64 11.5 1.4 1 23 868 891 868 891 0.95 9 12 1.3e-06 0.00012 23.2 2.3 1 23 897 919 897 919 0.98 10 12 1.3e-05 0.0012 20.0 2.4 1 23 925 947 925 947 0.97 11 12 0.00017 0.016 16.5 0.7 2 23 954 975 954 975 0.97 12 12 0.0002 0.019 16.3 1.0 1 23 982 1005 982 1005 0.94
Sequence Information
- Coding Sequence
- ATGATTGACTCAAGcaactattttaataatatttgccGCGTTTGTATACGTAAAGTACCGTCTTTATGTGATATATTCGAGGAGCAACCAGATGGATTGAATTTAGCAGTAAAATTAAGCATATTTACTGGTTTGGAGATATCAGTCGAAGATGATTTGCCGAAAAATTTATGTAAACCATGTCGGAGAAAAATCAAAGAGTGCTTTGAGTTCCATAGTATGTGCTTATCGGCGGAAGAGAGATTATCGAAACTTAAAAAAGATCAATTTGGCACTGCAATAGAGTTCAAAAAGGAGaagaaaattgttataaaacagAAAGTTAAGGAGGAATTACACGAAGAGGTGTCGTATTTTTTGTATCTTGAAGAAGAAACTAGTGTAAATGATGATTTGGTGTTGGATGATGTTAAAAAGTTTTGCGTTACAAGTGATTTTAGTGTTAAAAAACGTGTGTTACAACCGAAAATTAGTGCAGTTAAGAAATTTAAGTGCAAAATGATTGATGATCAAAGTAAAAAATACAAGTGTAAAGTGTGTAAAAAAAGATTCGCGTTTGAGTACCGCGTTAAGTTACATATGCAACGATTACACAAACAGATTTATTTACAAGATTGTAAAGTTACGTGTCCCAAATGCGGCATGAAATTTGAGCAAATACGCAACTTGCGACGCCATCTTGTCTACCACAACACCGATTCGTATTATGAGTGCAACTTTTGCGCTAAGGCTCTATTTTCGAAAAAATCATGGCGCACCCATCTAAAAGTCCACGATGAGAAAATCAAcgaaatttgtaaaatatgcaaTAAAACAATCTTCTCAAAAATCGCGTATTTTTTCCACGCTGAATACCACCGCACCCGACAAGTTCTAACtagtaaaatattcttttcgtGCAAAACatgcaatttaaaattcaaatcatTTGAAGACATCGCCGATCACAGTTTAACAATTCATAACTTAGACTACAcggttgaaaataaatatttagaagaTACGGCGAAGGATGATTCTAAGATTGATGATtgcaataatttaaacatgGATGAAAATAGTTCGAATGCTGATGATGTAGATTCGAAATTGaacgaaaataaaatcgaTTATTTCAATGTTGAAATGGATGGAAATTGTTCTAGCGTCGATGATTTAGACCCTAATGACTCGAAAATCGATCCATTAGATGTTCAGATGACAAGCATTCACGCGACGGATGAAACCGCGTCTGATATCCACGAAATACAAAAATCTGAATTAGATAAATTGTCTCTGGAAATGTCTACTATTCATAGTTTAGAAGATAAATGTATGGATGATTTGGATGAAGAAATGTCTAAAATACACTCTTCCCAAGAAGATAGTGCTAAAATGTCGGTAAATACAGATTTTGcaaaaaatttaaacgaaaataatattgcACGCAtcaatgaatttaataaactaGCTAATGAACcaaattcaaatcaaaataatattttaaacaatttcgaagacatattttataaggacgacaatttaacaaacaaattaaatataaaaaatttagacGATTTAGAACATAATGAAAATACAAGTCACACATCtactttaaataaaactaaaattaacGACAATGATTCAAATATGACTTACGAACGAGATAcgaaaactattaaaaatgatGATTTAAATGATTCAAATTTAGAAAGCGCGATAAAAAATCCTGATATTAGTGACTTGAACAATCCAAATACGGATGACTTTTTGGAAAACGCGGTAAAACAAACAGAAATTGGTGATCGAAATGATCCAAATTCGGAAACTAAAAATATTCCAGAAACGACTAATGATCCACAATCACAAAATCCACAAATTGATCCAAATTTGGAGAACGCGACGAACGAGTCTGAAAATGATGTACTATTAGATATATGTTTAgaaaaaacaattgaaaattcTGAAATTGGAGATTTAAATGATCCGAAAATCGCGACTAAAAATCTTATAGTTGAAGATTTAGACATGTCTATAGAAATCCCAGATAAAAATCCTAATATTGGAGATTTAATTGCTCCAAAATTGGATTTGCCTGTAATAAGTGCGAGTAAAAATCCAGAAATtgaagatttaaataaatcaagttcagatatatttatagataacGCGACTAAAAATCCTATAGTTGAACCACCATCGAATATGTGTTTACAAAATACATCGAAACAATCTCAAATCGGAGATTTAAATATGTCTATGGAAAACGTGACTGAAAACCTAGATTTCGCAAACAAATCAGTCGATTCAATTAAAAATGCCGAAACATATATAGACACAAATTCTAACCTAAACACGCCAACGAGCGTAAAAAGCACTGAAAACGATACAAAAACAGATAATTCCAACCCCAAAACACCCACAAACCACCAAAACATAACGTTCCAATGCAACATATGCAGCCGGTTATACAGAAACCTAACAGATCTCCACGGTCACGTGACCGACTGTTACAGCAAATTCAATCGACCGAAAAAGTTCATGTGCGACCAATGCGGCAAATGTTACCCAACCGTTTGGACATTAAAAAACCACAAAAATGGCCATTCCACCCTACGTGCGTACATCTGCGACATTTGCGGTCAACGCTTCAAGTGGCACAACGATTTGACCAATCACAAATCGCGGATACACGAAAAACTGCGACCGTACGTTTGCAAAATTTGCGGTAAACGTTGCGCAACGTCGGCGACTTTAAAATCACATATGCGCTATCACACCGGTGAACGTCCTTACGCGTGTTCTGTGTGTCATGTTACTTTTACGCAAAGCTCGAGTTTGAAGGAGCATATGTATAAGCATACTGGTGGGGTGGAGGGGTCTTGTCCTATTTGTAATAAGGTGTTTCAAACAGCTTTACGGTTACGGACACATATTAAACGGCATAGTACGCAAAGACAATTGTTCCCATGTGATTTATGTGGGCGTATGTTTACAGAAAAGAGTAGTGTGCGTAAACATAagtataaaatacataacgaaatcaaataa
- Protein Sequence
- MIDSSNYFNNICRVCIRKVPSLCDIFEEQPDGLNLAVKLSIFTGLEISVEDDLPKNLCKPCRRKIKECFEFHSMCLSAEERLSKLKKDQFGTAIEFKKEKKIVIKQKVKEELHEEVSYFLYLEEETSVNDDLVLDDVKKFCVTSDFSVKKRVLQPKISAVKKFKCKMIDDQSKKYKCKVCKKRFAFEYRVKLHMQRLHKQIYLQDCKVTCPKCGMKFEQIRNLRRHLVYHNTDSYYECNFCAKALFSKKSWRTHLKVHDEKINEICKICNKTIFSKIAYFFHAEYHRTRQVLTSKIFFSCKTCNLKFKSFEDIADHSLTIHNLDYTVENKYLEDTAKDDSKIDDCNNLNMDENSSNADDVDSKLNENKIDYFNVEMDGNCSSVDDLDPNDSKIDPLDVQMTSIHATDETASDIHEIQKSELDKLSLEMSTIHSLEDKCMDDLDEEMSKIHSSQEDSAKMSVNTDFAKNLNENNIARINEFNKLANEPNSNQNNILNNFEDIFYKDDNLTNKLNIKNLDDLEHNENTSHTSTLNKTKINDNDSNMTYERDTKTIKNDDLNDSNLESAIKNPDISDLNNPNTDDFLENAVKQTEIGDRNDPNSETKNIPETTNDPQSQNPQIDPNLENATNESENDVLLDICLEKTIENSEIGDLNDPKIATKNLIVEDLDMSIEIPDKNPNIGDLIAPKLDLPVISASKNPEIEDLNKSSSDIFIDNATKNPIVEPPSNMCLQNTSKQSQIGDLNMSMENVTENLDFANKSVDSIKNAETYIDTNSNLNTPTSVKSTENDTKTDNSNPKTPTNHQNITFQCNICSRLYRNLTDLHGHVTDCYSKFNRPKKFMCDQCGKCYPTVWTLKNHKNGHSTLRAYICDICGQRFKWHNDLTNHKSRIHEKLRPYVCKICGKRCATSATLKSHMRYHTGERPYACSVCHVTFTQSSSLKEHMYKHTGGVEGSCPICNKVFQTALRLRTHIKRHSTQRQLFPCDLCGRMFTEKSSVRKHKYKIHNEIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041196;
- 90% Identity
- iTF_01041196;
- 80% Identity
- -