Nbre006213.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000089.1:802943-810341[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0088 0.82 11.2 7.5 1 23 43 66 43 66 0.94 2 11 0.022 2.1 9.9 0.1 3 13 75 85 73 87 0.90 3 11 0.00024 0.022 16.1 3.1 1 23 97 120 97 120 0.93 4 11 0.0006 0.056 14.8 3.0 1 23 141 164 141 164 0.94 5 11 0.0022 0.21 13.0 4.3 2 23 172 194 171 194 0.91 6 11 1.5e-05 0.0014 19.9 2.6 1 23 225 248 225 248 0.96 7 11 3.9e-05 0.0036 18.6 3.6 1 23 255 278 255 278 0.93 8 11 1.7e-05 0.0016 19.7 0.5 2 23 316 338 315 338 0.93 9 11 0.00036 0.033 15.5 7.7 1 23 345 368 345 368 0.96 10 11 8.9e-06 0.00083 20.6 0.6 2 23 382 404 381 404 0.96 11 11 0.00013 0.013 16.9 4.2 1 23 411 434 411 434 0.96
Sequence Information
- Coding Sequence
- ATGAGAAAATTAGATAGATTGTACAAAGGTGATTTGATGTGCGATTTATTAGTGCTGCTTTTAGGTTCGCTCGTTATTGTTTGCAGATTGGAGAACGACATAGACTCGATAAGAAGACTGCCACTACACCATTGCCATGTTTGCCAACGAAGCTATACGCGAACAACCACTTTACGTACACATATCGAACAAAAACACAGCATGAAACCACCAACATACGGTTGTCCTATATGTGGAAGAATGTTCAGAACCCAACAATTACCAACTCGCCAAAGCTCAGCCCAAGAACACCATTGCGATATTTGCGATCGAAATTACTCGACAACAAGTTATTTACGTACACATATCGAACTAATGCACAGTGAAAACGTACCGATACTAAAATCGGTGAAGGGCGCATCATCACATACACCCCAAGAACATCGTTGTCGTATTTGCCGTCGTAACTATTCATCTGCGTCATATTTGCGTACGCATATCGAACAGAAACACAGCGCGAAACCACCAACACTTAAGTGTAATCATTGCGATCAAAAATTTAAGAGTCGACAGTATTTAGTTACTCACGAACACCTAGTGCATAAAGTCGCTAGGCGATTTCGTTATGGAAACTCGCAAAAGTGTATGGTTACTTCCAGATTACCATCATCCAGTTCGTCACCATTCGAAAAACACCATTGTCCCGTTTGCCAACGAAACTATTCAACCCTAGGCAATTTAAATTCGCACATGAGAAATGTACATTATCCGAAAGAAGTGTCGTATCAGTGCCAGATTTGCGGGAAAATGTGTAAAACCaaacattatttaatcaaTCATGAAATGGCTACGCATGGCATTAGCCAGAAAAGCAAAAATCCATACTTATGCATACCAATCAAAAGAGCAGCAATCCTGCCTATAAAATTCAAGTCGTCCACGTCTGGGAACGCGAAAGGTCCACAGCCATGTCATATTTGCCGTCGAGTGTATTCCACCCCGACAAACTTACGTTCGCATATCGCAAACGTACACAATCCCAATCCCAACTGGTACGAGTGCAAACACTGCGATAAAAAGTGTAAAACAAAACACTATTTGATCAATCACGAAATGTCTGTGCATGGTATCAGTCAACGCACAAGCAGACAAACCAAGCAAAACCAATGTCCTATTTGCAAACGGTTCTATTCATCAAAACCTAATCTAAATTCGCATATCAAAAATATCCATACAGACAGCGCCATGGCGTATTCGTGTCAAAATTGCGACTACAAATTTAAAACGAAGCACTATTTGACTGTGCATGAGTTACGAATGCACGGTATTCGAAAAAGGCCTAACTAA
- Protein Sequence
- MRKLDRLYKGDLMCDLLVLLLGSLVIVCRLENDIDSIRRLPLHHCHVCQRSYTRTTTLRTHIEQKHSMKPPTYGCPICGRMFRTQQLPTRQSSAQEHHCDICDRNYSTTSYLRTHIELMHSENVPILKSVKGASSHTPQEHRCRICRRNYSSASYLRTHIEQKHSAKPPTLKCNHCDQKFKSRQYLVTHEHLVHKVARRFRYGNSQKCMVTSRLPSSSSSPFEKHHCPVCQRNYSTLGNLNSHMRNVHYPKEVSYQCQICGKMCKTKHYLINHEMATHGISQKSKNPYLCIPIKRAAILPIKFKSSTSGNAKGPQPCHICRRVYSTPTNLRSHIANVHNPNPNWYECKHCDKKCKTKHYLINHEMSVHGISQRTSRQTKQNQCPICKRFYSSKPNLNSHIKNIHTDSAMAYSCQNCDYKFKTKHYLTVHELRMHGIRKRPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -