Basic Information

Insect: Nebria brevicollis
Gene Symbol: vps26bl
Assembly: GCA_944739395.1
Location: CALYJC010000133.1:268166-281053[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.6e-06 0.00043 21.5 1.7 1 23 98 120 98 120 0.98

2 8 4.1e-05 0.0038 18.5 0.1 1 23 158 181 158 181 0.95

3 8 3.5e-05 0.0032 18.7 1.5 1 23 322 344 322 344 0.98

4 8 1.5e-05 0.0014 19.8 0.2 1 23 350 372 350 372 0.98

5 8 4.4e-06 0.00041 21.5 1.5 1 23 378 400 378 400 0.99

6 8 1.7e-06 0.00016 22.8 1.2 1 23 406 428 406 428 0.98

7 8 4.4e-05 0.0041 18.4 3.3 1 23 434 456 434 456 0.98

8 8 3.6e-05 0.0034 18.7 0.6 1 23 462 484 462 484 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.6e-06	0.00043	21.5	1.7	1	23	98	120	98	120	0.98
2	8	4.1e-05	0.0038	18.5	0.1	1	23	158	181	158	181	0.95
3	8	3.5e-05	0.0032	18.7	1.5	1	23	322	344	322	344	0.98
4	8	1.5e-05	0.0014	19.8	0.2	1	23	350	372	350	372	0.98
5	8	4.4e-06	0.00041	21.5	1.5	1	23	378	400	378	400	0.99
6	8	1.7e-06	0.00016	22.8	1.2	1	23	406	428	406	428	0.98
7	8	4.4e-05	0.0041	18.4	3.3	1	23	434	456	434	456	0.98
8	8	3.6e-05	0.0034	18.7	0.6	1	23	462	484	462	484	0.98

Sequence Information

Coding Sequence: ATGTTTGATCCAAACGCAATAACGACCCAACAGTCAACGCAAATCCAGTACCAAGAGCAAAAGAATGAAAAGCAACAAGATGGTCAACAACAGAAGACTGAGTTTCCGAGTTTTTGTTACGCGAACGTCAACATGATTCACAAACTAACGCCGAACACTCAAGCGCTCAACTCAACAGTCAACATGGCCCAGTTGACAGACGACAAGTGCTACATTACGCAACCGTTCGGCTACAATTACGCACTGGTCAATCAAATGCAACTGGCGCAAAATACAATCTCGAACATTTCGTTCAAATGCGATATCTGCGGTCTGATGTTTAACAATTTAAGCCTATTGAATCATCATAAACGCATCCATACAACAGCGGGCGATCAAAACACTCAACACATTACGGTGCAAGTTGCTACGAATCAACAGGCCCAACCTCAAGCTGCGCAAATTCAAATCGTCTCTGCGGATCGGATACGATTTTCTTGCGAAGAATGCGGATTAGCCTTTGCAACTCAAGCCGACTTAAAAACTCATAAATCGGTGCAACATCAATCAATAAATCAATCGAATACGAAGGGAAAGAATTGTGAGACATGTGGAGCGCAATTGCcgcaagataataataataagaaaaaaactGTTGTAAAAATCAAATGTGACACGTGTTTATCGGCGGAAAGTATATCGCAACAGCCGCAGATCTTTGTCGTCGCAGCCGCCCCGCAGGACGCCCAAACCACGACGCAAACAGTCAAATACGAAACGCAAGAGACCCAAGTGACATCGCAAACATCACAAGCAAATCTGGGTACGCAGAATTCGATACCTATTGGCGTTAAAGCCGTGACAGGTAACCATCCAGTTAAACGCAGAGGTATGGCAAGTGTTACTAAATGCCATAAATGCAATGGTTCTGGTATTATTTTCATAGGGGGATCCAAGCAACAACAAAACAATCAAGATAAACCATTTCGATGCAATATTTGCAACGGTTCATTTAGTAGATACTCTAGTTTGTGGTCGCACAAACGTTTGCATTCAGGCGAAAAGAACTTCAAGTGCAATATTTGTGGGTTAGCTTTCGCAAAAGCGGCATATCTCAAAAATCATTCCCGTATTCACACAGGTGAAAAGCCATATCGTTGTAATGTTTGTGGTATGCAGTTTAGTCAATCGCCGCATTTGAAGAACCACGAACGGATCCATTCGGGCGAACGACCGTACGTGTGTGAAGTTTGCGAGAAGTCATTCGCAAGACACAGCACTTTGTGGAACCATCGGCGGATTCACACCGGGGAAAAACCGTATAGGTGCGATATATGTGGGTCATGTTTCAATCAAGCGACTCATTTAAAGAATCACGCGAAAGTTCATTCAGGCGAAAAACCATTCAAGTGCGATATTTGCTCCGTTGGATTCTCAGACAGATTTGCGTTAAAGCGTCATAGAAATATCCATGAGAAGTATGGACGAACAAAGGCGAATTCGAATACAAGTGCAAGTCAAACGGTGGCAACCAGTGATGCTCAagttcaacaacaacaacaacagcaacaacaacaacagcagcaacaactcACAGAAACAACCGATATTACCACGTTACAGAATATCACACCCAAGTCGGAATGGAATCAGGAAATGCCGATTTCGACTCTGATGATTAATTTTCGTTGTTTTGGTGTTATTTTAGGCCAGCAGGGCCATGCGGAACAGGAATTGGCCACGAAAATGTTACAAATACAAAGCAAAAGATTCTACCTTGATGTTAAACAAAATCGAAGGGGTCGTTTTATCAAAGTAGCCGAAATTGGGGCAGATGGGCGGCGTAGCCAAATATTCTTGGCCTTATCAACAGCAGCTGAATTCCGTGATCATTTGTCAACATTCAGCGATTTTTACGCTTCACTCGGTCCGCCGAATCCTGATAACGTTCCAGAGGATGGCAAACTCAAAAGTGAGATGATGATTAAAGATAACAGACGATACTACCTCGATCTTAAGGAGAACAGCCGTGGGCGTTTCCTCAGGGTATCCCAGACGATTACGCGCGGTGGTCCCCGTTCCCAGGTTGCGATTCCCGCCCAGGGAATGATTGAATTCCGGGACGCGTTAACCGACCTCCTCGACGAGTTTAGTACAGACGAACACGGCTACAAACCGGAACTGCCTGAAGGACGGCACATGCATGTcgacaataaaaatttttatttcgacatCGGACAGAATAACCGTGGCATCTACATGCGAATCAGCGAGGTGAAAACTAATTTTCGCACTGCCATAACTGTGCCAGAAAAATCTTGGTGTAGATTTCGTGATATATTGGCCGATTATTGTGAAAAAATCAAGCAGGCCGATCAAATACAACAACCAATGAGTTTTTTCGGGTTTGGCCAGTCCGCGGAGATTGATATCCGTTTGGACGAAGCCGACACACGGAAAACGGCCGAAATCAAGACAGAGGATGGCAAAAAAgaacgtttattattatattacgaCGGCGAAACCGTTTCGGGCTCGgtaaatataatattgcggAAAGCAGGTAGTAAACTTGAACACCAAGGAATTAAAATAGAGTTTATTGGTCAAATCGAATTGTTTTATGACCGTGGGAATCACCACGAATTCACGAGTTTGGTCAAAGAATTGGCGCGTCCCGGTGAAATGATTATCAATTCGAGTTACCGATTCGAATTCGGATGCGTTGACAAACCATTCGAAGTCTACACAGGGTCTAATGTACGATTACGatATTTCCTTCGTGTCACAGTCGTTCGTCGATTGGCTGATTTAGTCAAAGAATTAGACATTGCTGTCCATACATTGTCGTCCTATCCAGAAATGAATAACTCCATAAAAATGGAGGTCGGAATTGAGGATTGCCTCCACATAGAATTCGAATACAATAAATCTAAATATCATTTAAAAGATGTCATAGTAGGTAAGATCTATTTTCTCTTAGTCcgaataaaaatcaaacataTGGAAATTGCGATTATCAAACGCGAAACCACAGGAATGGGTAACAATTCATTCACAGAAAACGAAACGATTGCGAAATACGAAATCATGGACGGCGCCCCTGTTCGAGGCGAAAGTATTCCAATTCGAGTATTTTTAGCCGGGTATGATTTAACACCGACAATGAgggacataaataaaaaattctcgGTTAGATACTTCCTAAATTTAGTCCTCATGGACACAGAAGACCGAAGGTATTTTAAACAACAGGAAATAACACTTTGGCGAAAAGGGGAAAAACAACGTAAACCCCAATTACAATCACCGCAATTGCCATCGCATTTGGTGAATAATCGCGGCAATCTAATCGATAACAGTCCGCCGAATCATCAATCGCTTGATGACCGCGACGTGttaaacacacaaaataaCACATCGGAATCGGACGCGAATGAGACGCCCGCGGATCGGGACCTGCTAAACGAACCGGATCACGATGACGATGATCCGGACCGTGATCGGCAAACGACGCCGCACAAAATCGAGAATATGAAACGCGAGGAGGCCGATGGCCAAACGTCGAATAACGAAACGACTCAGCAATGA
Protein Sequence: MFDPNAITTQQSTQIQYQEQKNEKQQDGQQQKTEFPSFCYANVNMIHKLTPNTQALNSTVNMAQLTDDKCYITQPFGYNYALVNQMQLAQNTISNISFKCDICGLMFNNLSLLNHHKRIHTTAGDQNTQHITVQVATNQQAQPQAAQIQIVSADRIRFSCEECGLAFATQADLKTHKSVQHQSINQSNTKGKNCETCGAQLPQDNNNKKKTVVKIKCDTCLSAESISQQPQIFVVAAAPQDAQTTTQTVKYETQETQVTSQTSQANLGTQNSIPIGVKAVTGNHPVKRRGMASVTKCHKCNGSGIIFIGGSKQQQNNQDKPFRCNICNGSFSRYSSLWSHKRLHSGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYVCEVCEKSFARHSTLWNHRRIHTGEKPYRCDICGSCFNQATHLKNHAKVHSGEKPFKCDICSVGFSDRFALKRHRNIHEKYGRTKANSNTSASQTVATSDAQVQQQQQQQQQQQQQQLTETTDITTLQNITPKSEWNQEMPISTLMINFRCFGVILGQQGHAEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIFLALSTAAEFRDHLSTFSDFYASLGPPNPDNVPEDGKLKSEMMIKDNRRYYLDLKENSRGRFLRVSQTITRGGPRSQVAIPAQGMIEFRDALTDLLDEFSTDEHGYKPELPEGRHMHVDNKNFYFDIGQNNRGIYMRISEVKTNFRTAITVPEKSWCRFRDILADYCEKIKQADQIQQPMSFFGFGQSAEIDIRLDEADTRKTAEIKTEDGKKERLLLYYDGETVSGSVNIILRKAGSKLEHQGIKIEFIGQIELFYDRGNHHEFTSLVKELARPGEMIINSSYRFEFGCVDKPFEVYTGSNVRLRYFLRVTVVRRLADLVKELDIAVHTLSSYPEMNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGMGNNSFTENETIAKYEIMDGAPVRGESIPIRVFLAGYDLTPTMRDINKKFSVRYFLNLVLMDTEDRRYFKQQEITLWRKGEKQRKPQLQSPQLPSHLVNNRGNLIDNSPPNHQSLDDRDVLNTQNNTSESDANETPADRDLLNEPDHDDDDPDRDRQTTPHKIENMKREEADGQTSNNETTQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -