Nbre006991.2
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000104.1:1294616-1296487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0077 0.72 11.3 0.6 2 20 120 138 120 140 0.94 2 11 0.066 6.1 8.4 0.5 1 23 171 194 171 194 0.97 3 11 7e-05 0.0065 17.8 1.2 2 23 199 220 198 220 0.96 4 11 1.6e-05 0.0015 19.8 2.2 1 21 225 245 225 246 0.95 5 11 1.6e-08 1.5e-06 29.2 1.4 1 23 257 279 257 279 0.98 6 11 4.3e-06 0.0004 21.6 0.7 1 23 289 311 289 311 0.99 7 11 0.00044 0.041 15.2 1.6 1 23 317 339 317 339 0.97 8 11 2.1e-05 0.002 19.4 1.1 1 23 345 367 345 367 0.99 9 11 6.5e-06 0.0006 21.0 4.0 1 23 373 395 373 395 0.95 10 11 3.8e-05 0.0036 18.6 1.5 1 23 401 424 401 424 0.95 11 11 7.3e-06 0.00068 20.8 0.8 1 23 430 452 430 452 0.97
Sequence Information
- Coding Sequence
- ATGGATATGTCTGATACTAGTAAGGGTATAGTAAAAGTTGAGCCTGAAGCACAAGTTGGGGCAATGGCCGCAGTCAAAATTAAGCCTATCTACGAACATAAATCAGAGGAGCCTAATCTACCTACAATCATTGCATTAAAACAAGCCTTAGCGGTCAAAATGTCTGGAAATCTGGACATGAAACTTGAGGAGCCTGATGAATTAGAAGAGTTCATTTTGAAATCGGGTGATGGCGACCTAAAAGCCGAAGATGATTTAGATCTAAGCGAAATTGAAGAACAATCAGATCATGAATCAGATTCAGAAGAAGAGCCTGTTGAAGAGGTTGAGTTAACGAATCCGATTCCAGATACTAACACTTGTTTGAGTTGTAAACGTATATTCAAATCAACAGCTGGTTTAAAACGACATATGACATTTTGCGAAGCAGTTCCAGAAGAGGTAGAACAGGATGAtcatttgtgttattgttgcTCGGAAACGTTGGAAACCGCGCATAAAGTAGGCGATTTTAAGTGCAGCGAATGCAGTAATTTATTCATGACCGAGTCCGCTCGCGAGCAACATACACGCATCATACACTATGACGGACTGAACTGTCCCGATTGCAACAAACAGTGCCAATCGCGTAAACAGCTTGAGGCTCACATAATCACTCACATCGAAAAACCATTCTCGTGCGTATATTGCCAAAAGACATTCACACGCAAACACCACTTAGGCCGCCATATATTAGCAACAGGATGCGATGGCACACCACGCCAAAGTTACCAGTGTCAGGTTTGTGATAAAACATTCGGACGTCCCGATAATTTGCGGCATCATATGCGCGCGCATTCCGgggaaaacaaaaacaaaaagaacTACCGATGCAATGAATGTCAGAAAGTCTTCTATGGAGCTACTGACCTAGCAAACCATAAAAGAACTCATACTGgaGAACGCCCTTTCGCGTGTACAATATGCCCGAAACGATTCTATTTGAAGGAATCTAAAAAAATACACCTCCGAAAGCATACAGGTGAACGCCCGTACGAATGCACACAGTGTTCGGCTCGGTTCCCGGCTAAATCAACCCTAAACCGTCATACTCGCACGCATACCGGATATAAGCCGCATGTCTGTCATTATTGCGATAAAAGTTTCATCCAAGCGGCGCAGTTGCGCGCCCATATTTTCCACCACACTGGCGAGAATGGTTACACGTGTGAACAGTGTGGTAAAGCGTTTAACCGGAGGGCGCGTTTGGTGCACCATGTGAAGTTCGTGCATGAGGGTGCGAAGCGGTTCGAGTGCGACACGTGCAAGAAAACGTTTATGCGCAAGGAGACTTTGGCGCGGCATGTTTTGATACATAATACGGTTAATCGTAAAGCGAAAGCGAGTACAAATTCCGATAAAGCCATTTTAagtgaataa
- Protein Sequence
- MDMSDTSKGIVKVEPEAQVGAMAAVKIKPIYEHKSEEPNLPTIIALKQALAVKMSGNLDMKLEEPDELEEFILKSGDGDLKAEDDLDLSEIEEQSDHESDSEEEPVEEVELTNPIPDTNTCLSCKRIFKSTAGLKRHMTFCEAVPEEVEQDDHLCYCCSETLETAHKVGDFKCSECSNLFMTESAREQHTRIIHYDGLNCPDCNKQCQSRKQLEAHIITHIEKPFSCVYCQKTFTRKHHLGRHILATGCDGTPRQSYQCQVCDKTFGRPDNLRHHMRAHSGENKNKKNYRCNECQKVFYGATDLANHKRTHTGERPFACTICPKRFYLKESKKIHLRKHTGERPYECTQCSARFPAKSTLNRHTRTHTGYKPHVCHYCDKSFIQAAQLRAHIFHHTGENGYTCEQCGKAFNRRARLVHHVKFVHEGAKRFECDTCKKTFMRKETLARHVLIHNTVNRKAKASTNSDKAILSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041141;
- 90% Identity
- iTF_01039502;
- 80% Identity
- -