Nbre001300.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000014.1:281960-289723[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.3 1.2e+02 4.4 5.2 2 23 453 471 452 471 0.73 2 16 0.00041 0.039 15.3 1.1 2 23 478 499 477 499 0.95 3 16 0.12 12 7.5 5.0 1 23 507 529 507 529 0.98 4 16 0.0013 0.12 13.8 0.4 2 23 570 591 569 591 0.97 5 16 0.002 0.18 13.2 1.0 3 23 598 618 597 618 0.97 6 16 0.0049 0.45 12.0 0.8 1 22 958 979 958 982 0.90 7 16 2.3 2.1e+02 3.6 0.1 2 23 988 1008 987 1008 0.72 8 16 9.3e-07 8.7e-05 23.7 0.5 1 23 1014 1036 1014 1036 0.97 9 16 9e-06 0.00083 20.6 1.2 1 23 1042 1064 1042 1064 0.98 10 16 5.9e-05 0.0055 18.0 1.7 1 23 1070 1092 1070 1092 0.97 11 16 0.014 1.3 10.5 0.6 2 23 1111 1132 1110 1132 0.96 12 16 0.0095 0.89 11.0 0.6 3 23 1139 1160 1137 1160 0.96 13 16 0.00015 0.014 16.7 0.8 1 23 1165 1187 1165 1187 0.96 14 16 0.0041 0.38 12.2 2.3 1 23 1193 1215 1193 1215 0.98 15 16 3.4e-07 3.2e-05 25.0 0.3 1 23 1221 1243 1221 1243 0.98 16 16 3.1e-05 0.0029 18.9 0.4 1 23 1249 1271 1249 1271 0.96
Sequence Information
- Coding Sequence
- ATGTTGAATGGTATAAAATCAACAGAGATTGATATGAATAAAGTGTGTAGAACTTGTCTAGCTACCGGGGAATTGATATCTATTTACAAACCATGCTCGACAGGACCttgtattttacaaaaactaaCTTCAGTTACATCTAAAAAGtaTTACGATTGTTTTGGTTTGCCATCGCAGGTGTGTAATGTTtgcatttatgaaataaaccgTGCGTACAAATTCGCAACGAAATGTCACGAAACCGATCGGAAATTGCGTGACTATATACGGAAAATAAATGCGCAATCCGATGATTCGACGGCAATATCGAAAGTGGTGGGTCATTTCGAAAACGTCGGTTTCGATTTAACCAGTTCAGCGCATCAGCGCTCTATTCACGTTACAATTAATTACGATTCGGACGAATCCGATTTATCCGAAATTAACGAAAACAATCACGATAATAAAGCCGCACATGAACTATCTGCATATTGCGCCAAATCAGATGAGGAAATATGCAACTTTCAAGTTAATCGTACGCCTAAAATTGTGGAAAACGATATAAAAATCGAATTGACCAGTGAAATCGATTTGGGTATAACCGAATTATCGAATCATTCAGTTGAAGAAATAAACGTATTGAATTCAGATTCAGAATTACAAATCAAAACGGAAATCGACGATAATTCCAGTGATTCACCAATAAGCAATGGAATTGGAGACAATTTCGAATCTGAATGTTCGTTAACTTCAGACGTATTCAATACGTCTGAAGTTAACATCAATGAAATAAACCAACCAGACAATCAAAACACAGTGTcactaaattttaaatctaaaatccCAACAAGTGCCGTTGAAAAGCAAATATCCCCACAACAGGAATGTAATTTAGACGAGTCGAATGACGAAAATCGAATTACGTTTCAAACAAGTTTCGAAATAACTGATACTCCAATTTCTAACTTGGAATTCTCTGAATATGGAATAGATTTTGAGGAACGAGTTCTCTTAGATCAGGATTCAAATCAAACACAGTTAGCGTTTGAAAAGCATATGAAGGAGTTTTTAGCTAAAATATCCCCATCACCGGATGATCAATTACACAAAGAAATCGATTCGTTTGAAattgatattcaaaattttatcgATAAAGAGTCTCCTAAATTGCAAATCCATACAGAAGCGACTGACTCGGAAACTAGAAATTATTTCGATTTAGACTTAGTCAAACCGGAATTAGATGAATTAGATCCGTTAGTTATTGATGAGGCTGTTTGTAACGACCTCAGAAATGAAACTGTTCCAATTGAACAACCAAATGtaaatggTCACCAGACGGAAAAGATACCGTGGAAAGACGGTCGCAAATACCACCGTTGCTCAGTGTGTTCGCGAACAGTGCGCCATTTAACTAGACACATGCGCGGTCATACAGAGAACGCAAGTACTATGTGTGAGATTTGCGGGAAAATACTTAAAAACtcgaaacattttataaaacatcaaATTGCACATAAAACGAGACGCACCAAAGAATTCAAGTGCGATGCGTGTGCGAAATCATTCTTCGAATTAAAACATCTTCGGCAACATCGTCATGTTCACAAAACAACCAGTATATGTGAGCAAAGACTCATAAGAAGTAACCCTAAACACAGATGCGATAATTTACCAGAAAACGCAAAAGacaTAGCCGATCCTGTTCAGCAAGCAAAAGAGCTAATCAAATGTGATAAATGTGATGCTACGTTCACATCGGTTGATACATACAACACACACTACTTAATTCACACAACTAAAAAAGAATCATGTGCGCAATGCAAACAAATGTTTGATTCCAATCAATTGTTAACAGAACATTTAAAAACGCACATCGAACCAATAACAGATCATGTTATTACGCCGGgcGCTAGACAAATAGATATGTTGGTCGGAAATGAAGAACTTGATTTTAGAAATGTTTGTAGAACATGTTTGTCAACGAAAGATTTGACTGCGTTGtatgaaaattgttcatcggATGTAGGTATAATGCATATGTTAACGTCTTGCACATTTGTAACAttttatgaaAACGATGGATTACCAACTCAAATTTGTAACGAATGTGTATGTAAAGTAACTGCTGTTTACGAATTTTCGTTACAATGCCAAAAAGCAGATGACATTTTACGAACTTATAACCAGAAACGAATCGAAAACACTAAAAATCCATCAATCGCTCAATCATCTTCAGATATTCACAACGAATCTACTACAAATGCTAAATTAAAAACAGACAAAACAGTTTCTTCATATGTGGAAAcagaaataatacaaaaacatacttttaatgttttaaataaacaaactaaaccatatttaaaaccaagtGACGCCTCCGAAATCAAATTAGAAGTAATTACTGATCTGGAAAAATATAAAGATCTAAATTTATCCATACTAAATGACCATAATTATCTCCAAAATAATAACccaaatattaatatagaaCCTCTTAAAGTTgataaagaaatattaaaacaatcaCTAACTCAAATGTTGAGTCAAAAATACAGGGAAAATTACTCgaatagtaaaaaatatattgttcgACTTAAACCCTTACCATCTAGAGTGAAAACTACCAaagaaacatttaataaatctaaacTAACAAATTTCGagtttcaaattgaaaatgagcGACACAATTTCGATGATATCGAACATAATCAAAGTGATTTAATCGATTTTGTTACGAATAATCCAGATGAACCATCAAATACAGTGATTACAAACACATCTGATACTAGTAACCTGAAAATGGACTCAAttgaaacaacaaaaaaacgtGTAAAACCAAATAGAAATGATTTGAAATCGCCGATAACGAAACGAAAACCGCCATACGAGTGTAAAAAATGCGGTGAAAAGTTCCCATTGTATCGTTCATTGCGGGAACACTTTAAAAACATACCGCACAAGTACACACGAAAACCATGTCCCATATGTGCGAAACCCGTCACATATTGGTACTTTTTGCGACACGTCGAATCACATAAAGGTCTCCGGCCGTATATTTGCGAAATATGCGGTAAAAGTTTCGTAAACATTTCAAACTATAAACGCCATCAATACATACACCTCGGCGTGAAACCGTTCACGTGCGACATTTGCGGAAAAGGTTTTCCACAAGCGTTTTGTCTAAAAGAGCATCGGCGCATTCACACCGGCGAACGACCGTTCATATGTTACAAATGCGGCCAAACATTCCGAAGTTCAGTGTATTTAAAACAACATTTAGATAAACACGAACAAGATATAAAAGAACGCGTCGAAGAACAAGAACCAACGGAACTTCCAATAACATGCAGCATATGCAATCAAATCTATACAACGTTGCGCGGCTTTAAAACTCACAGTGCTACACACCAAGAGAAACATTTCGGCTGTTCGATATGCGGGAAATATTTCATCACCGATTACCGGTTGAAAATGCACGAACGGTACTACCACGGTCAACGGAAATTCGCGTGCGATATTTGCCAGAAAACGTTCTCGATACGGAATTCGTTTAAGCAACACATGTTAGCGCATTCGGGCCGCAAAGATTTCTCGTGTGATGTGTGCGCTAGGAAGTTTAACAGTTACGGCCATATACGCTACCATATGTTGACGCATACGGGTGAAAAACCGCATAAGTGTAGCGTTTGCGGGAAAGCGTTCGCCGGCAATGGGAATTTGGTCGTACATATGCGCACACATACTGGCGAAACGCCGTACTATTGTCCCGTTTGTCAGAAAGGCTTCTATGATTCGAGTTCGATGAAAAAACATCTTGCAGGACATTCTAAAACCAAATGa
- Protein Sequence
- MLNGIKSTEIDMNKVCRTCLATGELISIYKPCSTGPCILQKLTSVTSKKYYDCFGLPSQVCNVCIYEINRAYKFATKCHETDRKLRDYIRKINAQSDDSTAISKVVGHFENVGFDLTSSAHQRSIHVTINYDSDESDLSEINENNHDNKAAHELSAYCAKSDEEICNFQVNRTPKIVENDIKIELTSEIDLGITELSNHSVEEINVLNSDSELQIKTEIDDNSSDSPISNGIGDNFESECSLTSDVFNTSEVNINEINQPDNQNTVSLNFKSKIPTSAVEKQISPQQECNLDESNDENRITFQTSFEITDTPISNLEFSEYGIDFEERVLLDQDSNQTQLAFEKHMKEFLAKISPSPDDQLHKEIDSFEIDIQNFIDKESPKLQIHTEATDSETRNYFDLDLVKPELDELDPLVIDEAVCNDLRNETVPIEQPNVNGHQTEKIPWKDGRKYHRCSVCSRTVRHLTRHMRGHTENASTMCEICGKILKNSKHFIKHQIAHKTRRTKEFKCDACAKSFFELKHLRQHRHVHKTTSICEQRLIRSNPKHRCDNLPENAKDIADPVQQAKELIKCDKCDATFTSVDTYNTHYLIHTTKKESCAQCKQMFDSNQLLTEHLKTHIEPITDHVITPGARQIDMLVGNEELDFRNVCRTCLSTKDLTALYENCSSDVGIMHMLTSCTFVTFYENDGLPTQICNECVCKVTAVYEFSLQCQKADDILRTYNQKRIENTKNPSIAQSSSDIHNESTTNAKLKTDKTVSSYVETEIIQKHTFNVLNKQTKPYLKPSDASEIKLEVITDLEKYKDLNLSILNDHNYLQNNNPNINIEPLKVDKEILKQSLTQMLSQKYRENYSNSKKYIVRLKPLPSRVKTTKETFNKSKLTNFEFQIENERHNFDDIEHNQSDLIDFVTNNPDEPSNTVITNTSDTSNLKMDSIETTKKRVKPNRNDLKSPITKRKPPYECKKCGEKFPLYRSLREHFKNIPHKYTRKPCPICAKPVTYWYFLRHVESHKGLRPYICEICGKSFVNISNYKRHQYIHLGVKPFTCDICGKGFPQAFCLKEHRRIHTGERPFICYKCGQTFRSSVYLKQHLDKHEQDIKERVEEQEPTELPITCSICNQIYTTLRGFKTHSATHQEKHFGCSICGKYFITDYRLKMHERYYHGQRKFACDICQKTFSIRNSFKQHMLAHSGRKDFSCDVCARKFNSYGHIRYHMLTHTGEKPHKCSVCGKAFAGNGNLVVHMRTHTGETPYYCPVCQKGFYDSSSMKKHLAGHSKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -