Nbre014227.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000277.1:85678-89636[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00032 0.029 15.7 1.1 2 23 200 222 199 222 0.94 2 22 1.6 1.5e+02 4.1 1.7 1 20 332 351 332 353 0.93 3 22 0.64 60 5.3 0.4 1 23 376 399 376 399 0.95 4 22 0.003 0.28 12.6 0.9 2 22 407 427 407 427 0.94 5 22 0.031 2.9 9.4 0.5 2 23 435 456 434 456 0.95 6 22 0.00079 0.074 14.4 2.3 2 23 490 512 489 513 0.95 7 22 0.00061 0.056 14.8 2.0 2 23 519 541 519 541 0.97 8 22 0.0025 0.24 12.9 1.1 1 23 550 572 550 572 0.98 9 22 0.00032 0.03 15.7 0.8 1 23 577 600 577 600 0.96 10 22 0.02 1.9 10.0 2.8 1 23 637 660 637 660 0.97 11 22 0.0041 0.38 12.2 5.2 1 23 675 698 675 699 0.96 12 22 0.0053 0.5 11.8 0.2 2 23 720 741 720 741 0.96 13 22 0.23 21 6.7 0.1 2 23 785 806 785 806 0.96 14 22 5e-05 0.0047 18.2 1.0 1 23 846 868 846 868 0.97 15 22 0.012 1.1 10.7 3.6 1 23 879 902 879 902 0.96 16 22 0.082 7.6 8.1 0.6 1 23 914 937 914 937 0.98 17 22 6.4e-06 0.0006 21.0 1.9 1 23 975 998 975 998 0.98 18 22 0.00019 0.017 16.4 0.5 1 21 1006 1026 1006 1027 0.95 19 22 0.011 0.98 10.9 0.1 1 23 1065 1087 1065 1087 0.98 20 22 0.019 1.8 10.1 0.4 1 19 1087 1109 1087 1109 0.92 21 22 1e-05 0.00097 20.4 4.3 2 23 1118 1140 1117 1140 0.97 22 22 0.54 50 5.5 0.9 1 23 1190 1213 1190 1213 0.95
Sequence Information
- Coding Sequence
- ATGGatgatataataaatataaataatgtgtGTCGATTGTGTTTATGTGAGGATGCAAATCTTGTGTCGATTATCGAAGAAAATTCAACTTTATCCCAGAAGATAATTTCATGTGTAAATGTTGaagTAAATATAACAGATAGAATGTCGACAATGATTTGTAACTTGTGTCTTAGTAAAGTTGACGAATGgtatgattttaaaaaatgttgcgATGATGTGCAATTCAAGTTACGCCAATGGGCGAATAGTCTCAGTGGTGATAAATATATACTGggAATCACAATTAAAGAAGAAGCTATTGATGCAGATGATACTGAGCTGCTAATAGATAGTTCTATGTGCATTAAAAGTGAACCACCTGATTCGTTATCACCACACGTATCTGATAATGACGATCGACTCGATTATGAATATGCTGAAATGCCCGTATTGCATCCCGCCATTTCCATGGAAACAAACCCCGATGATTTACTCATACCAACACTAGAGTGCCCAGTTGCAATACACAGTATGGACGCGCCATTTTACGATATCACATTTCAACAAAATGACGAAGAACACAGTGCTCGATCATATGAAGATATACGCGATACAGTCTGTCGCATCTGCGATAAAGAATTTAGCACTTATTCCAATAGACAACGACACGAAAAGAACGTGCATTCTTTAGATAAAGAACTGTCGATAACAGAAGTTCGATCACTGCGCAATGATCCTATACAAGAGTACGATCACCTTCAAGAAATACCAGCCGAAGATAATAGCAGCGAAACCAGTAATGTTACACTCGAACAATTCACAGCTAGTTTACAATTGATCCAAACCACACCAGTGTCCAGGACGAAGCATAGAATTTCGGAAAAAGAATTCGCTGAGTTTAACAAACGCATCGTCGGTCAAATCGAACGCGAACGTTGCGATTGTTGTGACGTGCAACATTCGCCGAAAAGTTTAATTGCACATTTGCGCAAGACTTTTATTATACCGAGTTATTCTTGTTTTTGGTGTTGTATTTCATTTCCAAATCGCTCGCAATATATGCAACACGCGACAAAAAGGTATTGCAAACAACGAGCTCGTTTAGTTCACAGTGGTGATTATCCATTTAAAGCGTATCAACATTACCAGTGTGCCGGTTGCAAATCGTTATTCGTCAGtaaattattcttattaaCACACATAAGTAACAtgcatagtaaaaaaaaattaccagCAACTTGTTATTTTTGCGGACAAGTGTTCGACACTAAAAACAACTATAGAAGTCACACACAAACTAGTACTTGTTTCATAAAGTTATATTGTAGTATTTGTAAGCATGTTTTCGATGATCAAGCTGCGTTTGATGATCATTCCAAAATTCACGATTTTGAGCCTACACATGATGCATTGAATGGTTTTACGAAATTAGATGATACAATGGTTagtcaaaatgttgaaaacgcTAGTAGTAGTAGTTCGACAACTTGTCacatttgtaataaaacaTATGCATCGTACAAGGGTCTATTAATGCATATGAGCGTCGTTCATCATACATATAAATtgagaaaatgtaaaatttgtcgCAAACGATTCATTTTCAAAAACGAATTCCAAGATCACATGTTGAGTGAGCATCAAAATGAAATTGAATCGAATAACTTCTCTTGTGTACAATGCGGTGAACGGTTTCCAACTTTGGTTAAATGGTGCGAACACCAACAGACGCACACTGACTCAGTACATCAATGCGACGATTGTTCGAAAGTGTTCATCTCTGACGAAGAATTAAAAGATCACAAAACCACAGCGCACTCTAATATCAAACTGAAATTATACCGTTGTTCTGATTCAAACTCCTACAAAACTGCGTCTTCATTGGAAGACACAGAAGACGAAGCCACCAAATTAGACGATCGCATCCATAAATGTGACCTGTGCGATTCCACTTATCGAATTAGGGATTCGTTGTTGAAGCataggaaaataaaacatggaTTGAACATGCCGTTGAAACGACggtctaaatcaaataaattttcgtGTGGTTTTTGTAAGAAGAAATTTACTAATAATGCATCATTGGTATTGCATAAACGGCATGTTCATCACCGAAATAATGGTGAAACCGTGGAAAGTGATCTAGATGATTCGAACAGTGTGTTTCCAAATAGTTGCGATGGTTGCTCGAGATCGTTTCCAACTGTTAAAGCATTGTCAATACATGCGAAATCGCACGCAACCTCACCAGCAAAAATGACTGTAAATGCTGTTGTTTCACCAGAAAAATATCTAATACAAACAATGACTGTGGATGCGCCTGAAAATATAGTTGCGCCAATAAAAGATGAGCCAGTAGAAAATAGAACTTGTGAGATTTGTCAAGATGTATTTGAAACCATTGGCGAATATCGAAAACACGCCAAAGCGcatcttaaaaagaaaaacaaaccTAGGAGATGTTTGATTTGTCGCAACAAATATATTCGACTAGAAAGTCATATGCGCATAAGTCACAATGAgaatataatttccaaaaaaaacaatatattttcttgctcTGAATGCACCGCAACGTTTCGGTACCGAAGTCTTTTGCTCAGGCATATGGCGCAACATTTACGAAAAGCGCATATTGGCAAAACAGTGTATAGATGCCAGTTATGTCCTAAAGTATGTGTTACATCGTTCGGGTTATCTACGCATACGAAACACGTGCACGAACATTGTGAAGTTAAAGACGATTCAATGCCTTTTAAATGTGAATTGTGTCCTAACTCATTCTTAACGGAACTGGGATTAGTTAGACATCGAAGACGCACGCATGGACAACAGGATGTAAAGCATGAAGTTGAAGAAGAAACAATGAGTGCTGACGAGAATCACATAGACGAAAACGTTTCGAATGTAGTCAAAAAAGAATCGGCACCTGTCACATACCAATGTAAACATTGCGATAAAAATTACACCCGGCCAGGACTCTGGCGTGCACACATGCTCAAAACTCATCCAACAATGAAGATGAAAAAATTCACTTGCACATTGTGCAATAAAATTTTCCCCTCGCAGTTGTCACTAACGCGCCATCGAAAAATATTTCGAACTACCAAACAGCATATAAAATcgaaaatcattaaaaaaaaaactgtaccTCAAACAAAAAAAGCAAATCATACCACAGTAGATATAAAACCTGAAATATCTCCATTCGAATGCAAACTTtgcgaaaatatatattcaagtGCTATCGCACTTGGACGGCATATGTCTTCGCATACATGCAAGATGCCTTGCATTATTTGCAACGAATCGTTTAAAACTGAATCCGATTTAATCATGCACGATGAAGCGAATCATAGAAACGGTAAGTGTAAGTATTGTAAGAGATCATTCACGCAGCCGCATTACTTAAGAAATCACATTAAATCGAAACATGCTAGAGAATCGGCACGTGAAACGGGCGAGGGGGTGAAAAAAACCAAAACAGCCGCAATGCGTGAGAGTAAAATGAAACGTAAGAGAAACGTTTATAGCGATAACGGCATTGACACTATGAAACAAGCAGTGCACACTGAACGTGTGTACTCGTGCACCGCTTGTAACATGACGTTTTTAAATGCAAACAAACTTCGGTTGCATGTGACGAAAACTCATAATATGGCATTAAccgattaa
- Protein Sequence
- MDDIININNVCRLCLCEDANLVSIIEENSTLSQKIISCVNVEVNITDRMSTMICNLCLSKVDEWYDFKKCCDDVQFKLRQWANSLSGDKYILGITIKEEAIDADDTELLIDSSMCIKSEPPDSLSPHVSDNDDRLDYEYAEMPVLHPAISMETNPDDLLIPTLECPVAIHSMDAPFYDITFQQNDEEHSARSYEDIRDTVCRICDKEFSTYSNRQRHEKNVHSLDKELSITEVRSLRNDPIQEYDHLQEIPAEDNSSETSNVTLEQFTASLQLIQTTPVSRTKHRISEKEFAEFNKRIVGQIERERCDCCDVQHSPKSLIAHLRKTFIIPSYSCFWCCISFPNRSQYMQHATKRYCKQRARLVHSGDYPFKAYQHYQCAGCKSLFVSKLFLLTHISNMHSKKKLPATCYFCGQVFDTKNNYRSHTQTSTCFIKLYCSICKHVFDDQAAFDDHSKIHDFEPTHDALNGFTKLDDTMVSQNVENASSSSSTTCHICNKTYASYKGLLMHMSVVHHTYKLRKCKICRKRFIFKNEFQDHMLSEHQNEIESNNFSCVQCGERFPTLVKWCEHQQTHTDSVHQCDDCSKVFISDEELKDHKTTAHSNIKLKLYRCSDSNSYKTASSLEDTEDEATKLDDRIHKCDLCDSTYRIRDSLLKHRKIKHGLNMPLKRRSKSNKFSCGFCKKKFTNNASLVLHKRHVHHRNNGETVESDLDDSNSVFPNSCDGCSRSFPTVKALSIHAKSHATSPAKMTVNAVVSPEKYLIQTMTVDAPENIVAPIKDEPVENRTCEICQDVFETIGEYRKHAKAHLKKKNKPRRCLICRNKYIRLESHMRISHNENIISKKNNIFSCSECTATFRYRSLLLRHMAQHLRKAHIGKTVYRCQLCPKVCVTSFGLSTHTKHVHEHCEVKDDSMPFKCELCPNSFLTELGLVRHRRRTHGQQDVKHEVEEETMSADENHIDENVSNVVKKESAPVTYQCKHCDKNYTRPGLWRAHMLKTHPTMKMKKFTCTLCNKIFPSQLSLTRHRKIFRTTKQHIKSKIIKKKTVPQTKKANHTTVDIKPEISPFECKLCENIYSSAIALGRHMSSHTCKMPCIICNESFKTESDLIMHDEANHRNGKCKYCKRSFTQPHYLRNHIKSKHARESARETGEGVKKTKTAAMRESKMKRKRNVYSDNGIDTMKQAVHTERVYSCTACNMTFLNANKLRLHVTKTHNMALTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -