Basic Information

Insect: Nebria brevicollis
Gene Symbol: -
Assembly: GCA_944739395.1
Location: CALYJC010001815.1:513196-525186[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00081 0.075 14.4 0.6 1 23 443 465 443 465 0.98

2 11 2.1 2e+02 3.7 0.3 5 23 475 493 473 493 0.92

3 11 0.0003 0.028 15.8 1.1 1 23 499 521 499 521 0.95

4 11 1.3e-06 0.00012 23.2 3.6 1 23 527 549 527 549 0.99

5 11 1.7e-07 1.6e-05 25.9 1.4 1 23 555 577 555 577 0.99

6 11 7.6e-07 7.1e-05 23.9 1.8 1 23 583 605 583 605 0.99

7 11 5.6e-08 5.2e-06 27.5 1.4 1 23 611 633 611 633 0.99

8 11 2.2e-07 2e-05 25.7 1.9 1 23 639 661 639 661 0.99

9 11 3.1e-06 0.00029 22.0 0.9 1 23 667 689 667 689 0.98

10 11 2.3e-07 2.1e-05 25.6 1.3 1 23 695 717 695 717 0.99

11 11 2.6e-06 0.00024 22.3 2.6 2 23 752 773 751 773 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00081	0.075	14.4	0.6	1	23	443	465	443	465	0.98
2	11	2.1	2e+02	3.7	0.3	5	23	475	493	473	493	0.92
3	11	0.0003	0.028	15.8	1.1	1	23	499	521	499	521	0.95
4	11	1.3e-06	0.00012	23.2	3.6	1	23	527	549	527	549	0.99
5	11	1.7e-07	1.6e-05	25.9	1.4	1	23	555	577	555	577	0.99
6	11	7.6e-07	7.1e-05	23.9	1.8	1	23	583	605	583	605	0.99
7	11	5.6e-08	5.2e-06	27.5	1.4	1	23	611	633	611	633	0.99
8	11	2.2e-07	2e-05	25.7	1.9	1	23	639	661	639	661	0.99
9	11	3.1e-06	0.00029	22.0	0.9	1	23	667	689	667	689	0.98
10	11	2.3e-07	2.1e-05	25.6	1.3	1	23	695	717	695	717	0.99
11	11	2.6e-06	0.00024	22.3	2.6	2	23	752	773	751	773	0.98

Sequence Information

Coding Sequence: atgGCGACTATTcctaagaaaaaaaaaattgtagagAAAGTTAAGAGGACGAGAGGTGCAATTAGGGCTCTTTTagaagtttataaaaataagccATGTTTATATGATGTGAAATCTCTGGCGTACAGGAACAGGGAGCGGGCACGAGATGCTCAAGAAGAGATGGTGGATGCAGTAAAACAGTTTATTCCATATATTACAAtGGACGACTGTATTAAAAAATACCATTGTCTACGAAGTCAGTTCCGAAAAGAGAGTCAGCAATTCGAGACtagcaaaaataaaagtagtGCAGGAGCTGACGATATCATATTACCAAAACTTTGGTGCTACAATgatctaatttttttaaaagatcATATAAAGCAAAAAGAGGGGACGTTATACGGCCTCCAGTATCCACAAGAAGGGTTGGAAGCTTCTGAATCGCAAGATTCAGAAGCGGAATACACAGTCGAATATTTGGAGAATGATGAGGAGaTGTTCAACGATAGTCTGCAAATGCTATCTCCTACGCTGTCGCAAGTCACACCATCAACGTCGTCATTGGCAAGGAAATCGCGAGCCAAGAGAGCAGAGGACCATAAAAATGATGACATTTCTGAAGCCATATGCGGCTATTTAAAAGGCAAACACGAGATGAGTAAAAGCAAGAACGTCGATGTAAAGGAAACGGACAGAGCCGAAGCCTTTGCTAATGTGTGTAGAACTTGTTTGATGGCATCTGACGATGTGAAATCGCTGTACGAATCGTGTTCGACGGAAATTGAAGAATGTGTGGCGGAAATACTGATGTATATCACCCCATTGAGAtaCGACTCCTGCGATGGATTGCCCACAAGTATTTGCTATGGTTGCATAAGAGAAATgctccaattttataaattcgtccaaAAATGTTGTGAATCGGATAAGATATTGCGTAGTGATACAGTGAAAATTAACCAAAGCACAGCGAACATGATCTCTATCggcaatataacaataattgaCGATCATACGAACAGTCTTACTTATGAAAATGATGAACGAAATTGTAATACACAAAATTTGCAATGTCCATTAACTGAAggagaaattaaaaatgaacttgAGCAAGAAATGGATTTTATAGAGCATGAAATTGATGTTAAAGCCGAACCCAACACCAGTAGAGAAACTgtggaaaaaatatattcaacggATGAAAATACAGGTGTTGCAAATCTCTATAAAAGTTTGTCTCCCCTAAAACAGCATTCGAAAGAGCAGGATGAGCAAGataataacaaacaattcGAGACGGAAGGTCTTCCTGTCAAACGCATCCATACCACGGAACAATCGTTCTCATGCTCGGTGTGTAACCAAGAATTTGCAGAGAAGAAAATCCTAACTAACCATATTCGAACCCACACCGAGAAAAAACCCAACAATTATAGAATTTGCACACGTTCCTCTGGTGTAAATACTACCATCACTACTCACATGCGCATGCATAATGAAGGGAAACCCTTCACATGCATAGTTTGCAATCGTAAATTTGCACAGAAGAAAAACCTAAATGTACATTCTAGAATCCACTCCGGCGTaaaaccatacaaatgtacaatttgcgAGCGTTCATTTAGTCATACGAACAGTTTGACCACTCACATGCGTATCCATACGCATGAGAAACCCTTCACTTGCACAGTGTGCAACCAAGAATTTGCACAGAAGAATAACCTAACTAGACATATTCGAACCCACACCGGTGAGaaaccatacaaatgtacaatttgcgAGCGTTCATTTAATCAGACGAACAGTTTGACCACTCACATGCGTATCCATACGCTTGAGAAACCCTTCACTTGCTCAGTGTGCAACCAAGAATTTGCACAGAAGAGTAACCTAACTAAACATATTCGAACCCACACCGGTGAGaaaccatacaaatgtacaatttgcaaacgttcatttagtgggaaaatgaatttgaacactcacatGCGTATCCATACACTTGAGAAACCCTTCTCTTGTTTGGTGTGCAACAAAGAATTTGCAAAGAAGATAAACCTAACTACACATATTCGAACCCACACCGGCGAGAAACCATACGAATGTACAATTTGCCAACGTTCATTTAATCAGAAGAGCAGTTTGACCACTCACGTGCGTATCCATACACATGATAAACCCTTCACTAGTTCGGTGCACAACCAAGGAGTTGCACATAAGAGTAATCTAACTAGCAATATTCGAAGTCACACCGGAGAGAAACCAcaaaaatgtacaatttgcaaacGATCATTTAGTCGGATGACCAGTTTGACCACTCACATGCGTATTCATACACCTGCGAAATCCTTCTCTGGCGCAGTGTGCAACCTCTAA
Protein Sequence: MATIPKKKKIVEKVKRTRGAIRALLEVYKNKPCLYDVKSLAYRNRERARDAQEEMVDAVKQFIPYITMDDCIKKYHCLRSQFRKESQQFETSKNKSSAGADDIILPKLWCYNDLIFLKDHIKQKEGTLYGLQYPQEGLEASESQDSEAEYTVEYLENDEEMFNDSLQMLSPTLSQVTPSTSSLARKSRAKRAEDHKNDDISEAICGYLKGKHEMSKSKNVDVKETDRAEAFANVCRTCLMASDDVKSLYESCSTEIEECVAEILMYITPLRYDSCDGLPTSICYGCIREMLQFYKFVQKCCESDKILRSDTVKINQSTANMISIGNITIIDDHTNSLTYENDERNCNTQNLQCPLTEGEIKNELEQEMDFIEHEIDVKAEPNTSRETVEKIYSTDENTGVANLYKSLSPLKQHSKEQDEQDNNKQFETEGLPVKRIHTTEQSFSCSVCNQEFAEKKILTNHIRTHTEKKPNNYRICTRSSGVNTTITTHMRMHNEGKPFTCIVCNRKFAQKKNLNVHSRIHSGVKPYKCTICERSFSHTNSLTTHMRIHTHEKPFTCTVCNQEFAQKNNLTRHIRTHTGEKPYKCTICERSFNQTNSLTTHMRIHTLEKPFTCSVCNQEFAQKSNLTKHIRTHTGEKPYKCTICKRSFSGKMNLNTHMRIHTLEKPFSCLVCNKEFAKKINLTTHIRTHTGEKPYECTICQRSFNQKSSLTTHVRIHTHDKPFTSSVHNQGVAHKSNLTSNIRSHTGEKPQKCTICKRSFSRMTSLTTHMRIHTPAKSFSGAVCNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -