Basic Information

Insect: Nebria brevicollis
Gene Symbol: Zbtb11
Assembly: GCA_944739395.1
Location: CALYJC010000299.1:938776-940594[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00013 0.012 16.9 1.6 1 20 95 114 95 116 0.95

2 15 0.069 6.4 8.3 6.4 1 23 121 143 121 143 0.96

3 15 0.0027 0.25 12.8 1.9 1 23 190 212 190 212 0.95

4 15 1.3e-05 0.0012 20.1 2.5 1 23 215 237 215 237 0.98

5 15 4.1e-06 0.00038 21.6 1.4 1 23 251 273 251 273 0.99

6 15 8.3e-05 0.0077 17.5 2.2 1 23 276 298 276 298 0.98

7 15 0.003 0.28 12.6 2.5 2 23 317 338 317 338 0.97

8 15 0.0095 0.88 11.0 0.0 2 23 344 366 343 366 0.93

9 15 4.4e-05 0.0041 18.4 0.2 2 23 373 394 372 394 0.96

10 15 0.0007 0.065 14.6 0.1 1 23 400 422 400 422 0.97

11 15 0.00026 0.024 16.0 0.1 3 23 430 450 428 450 0.95

12 15 2.7e-06 0.00025 22.2 0.2 1 23 456 478 456 478 0.98

13 15 2.2e-05 0.002 19.4 2.3 1 23 485 507 485 507 0.97

14 15 1.9e-07 1.8e-05 25.8 1.5 1 23 513 535 513 535 0.98

15 15 0.00023 0.022 16.1 4.9 1 23 541 563 541 563 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00013	0.012	16.9	1.6	1	20	95	114	95	116	0.95
2	15	0.069	6.4	8.3	6.4	1	23	121	143	121	143	0.96
3	15	0.0027	0.25	12.8	1.9	1	23	190	212	190	212	0.95
4	15	1.3e-05	0.0012	20.1	2.5	1	23	215	237	215	237	0.98
5	15	4.1e-06	0.00038	21.6	1.4	1	23	251	273	251	273	0.99
6	15	8.3e-05	0.0077	17.5	2.2	1	23	276	298	276	298	0.98
7	15	0.003	0.28	12.6	2.5	2	23	317	338	317	338	0.97
8	15	0.0095	0.88	11.0	0.0	2	23	344	366	343	366	0.93
9	15	4.4e-05	0.0041	18.4	0.2	2	23	373	394	372	394	0.96
10	15	0.0007	0.065	14.6	0.1	1	23	400	422	400	422	0.97
11	15	0.00026	0.024	16.0	0.1	3	23	430	450	428	450	0.95
12	15	2.7e-06	0.00025	22.2	0.2	1	23	456	478	456	478	0.98
13	15	2.2e-05	0.002	19.4	2.3	1	23	485	507	485	507	0.97
14	15	1.9e-07	1.8e-05	25.8	1.5	1	23	513	535	513	535	0.98
15	15	0.00023	0.022	16.1	4.9	1	23	541	563	541	563	0.98

Sequence Information

Coding Sequence: ATGGATCAAAAATGTCGTGTTTGTTTGGAGCAAGCGACCGTTTTGGTTTTAATCacgaaacaacataaaatagGCGATGAAATGATCTCAATTTGCGACATAATAACATCATGCACTTCAATCCAAATTTCAGATACGAGTGATTCAGTGTGTGAGCGATGCGTAAATGATGCGTTAACAACTCACACGTTTATAAAACGTTGCGAAGCATCCGAAGAAACGTTAAAACAATTAGAAATCAAAAACGAAGACTTCGAAGAGCAATTAGATGATGATATAGAGTACCAATGCCCTAATTGTCCCGTAAAATTTACAACCAAAACTGATTTAACCTCACATAAATGTGATATAAATCAAGAATTCAATTGTTGCTTTTGCAACAAACAATTCACAACTGAACTAAAGCTAAACACACACTTGTTCAAACACTCCCCAACGAACAACCTACGCTCAATGCGCCCAACCCGACTAAAACCGAAATCACCCGAAGCGAAATTCGCGCCTAAATTCGACGAACTATCACATGAAATCCTACAAAACTCAACCACAAAAAACGAACTAGGCCTctacgtgtgtgtatgttgcCCGGAAACGTTCACAGACCTCACCAAACTCCGGGTACACACACGAAAACACCCGAATTTCCCGTGTAAACTTTGCAAAAAACGGTTCACACTTATTACAAACTTACGCCGCCATTTACGCTCACATAGTGATAATTTCACGATAAAACCAGACGTGGACTCTGAATATAAGTGTGTTTCGTGCGGCGAGGTGTTTAAACGCCGCAAACAACTCTCCGATCACTTGAAGACACATAAAGACTTCAGTTGCTCGAAGTGCAACGCTCGGTTTACGTTCATAACCAACTTGCGGAAGCATTTACGGTGGCATAACCGCCCCAAGGATGAAATACGCGTGTGGAAACAACCCCCCACTGAGAAACGCACGTGTGATGTGTGCTTTAAAGTGTTTAAATTCCGGCCATCGATGTTAAAACACCGCAAAAAACACGTTTCCGTTGGTAAACAATGCGGTTATTGCGCCGCCATGTTTGATAACGCGGTGTTGTTGTCTAGACATATGGAGGATGCGCATGGGAATGAGAAGaatgttgtttgtgcgcaatGCGGGAAGCGTTTCTTTAAAGAATggaatttaaaaatgcatatGTTGGTGCATACTGGGGCGAAGCCTCATATGTGTGAGATTTGTGGGGTTAGTTTCGCGTTGGGTGGGAATTTAGCGTCGCATAAACGTGTACATACTGGTTTGAAGCCGTATGGTTGTGGTACGTGTGGTCGGGGTTTTACGCAACAGGCGGCGTTGCGGTCGCATGAAGCGTCGCATTCGACGCGGCGGGATCACGTGTGTCCGGATTGTGGTGCGGCGTTTTCGCGCGCGGGTGCTATGCGTAACCATCAGAAACGCCATAATCGGGAGAACCGGTTGTTTGCGTGTACGATGTGCGATAAACGGTTCACGTTTAGTTCGGAACGGAAGCGACATATGACGATACATACGGGTGAGAAGAGGCACCAGTGTGATGTTTGTGGCAAGGCGTTTAATCGGTCGACTAATTTGACGGTGCATAAACGGATACATACGGGGGAGACGCCGCATAAGTGTGGCGTGTGTGGGAAAGGGTTTATACAAGTGCATTGTTTGCGGACGCATTTAAATACACATAATGTTGTCGatgtataa
Protein Sequence: MDQKCRVCLEQATVLVLITKQHKIGDEMISICDIITSCTSIQISDTSDSVCERCVNDALTTHTFIKRCEASEETLKQLEIKNEDFEEQLDDDIEYQCPNCPVKFTTKTDLTSHKCDINQEFNCCFCNKQFTTELKLNTHLFKHSPTNNLRSMRPTRLKPKSPEAKFAPKFDELSHEILQNSTTKNELGLYVCVCCPETFTDLTKLRVHTRKHPNFPCKLCKKRFTLITNLRRHLRSHSDNFTIKPDVDSEYKCVSCGEVFKRRKQLSDHLKTHKDFSCSKCNARFTFITNLRKHLRWHNRPKDEIRVWKQPPTEKRTCDVCFKVFKFRPSMLKHRKKHVSVGKQCGYCAAMFDNAVLLSRHMEDAHGNEKNVVCAQCGKRFFKEWNLKMHMLVHTGAKPHMCEICGVSFALGGNLASHKRVHTGLKPYGCGTCGRGFTQQAALRSHEASHSTRRDHVCPDCGAAFSRAGAMRNHQKRHNRENRLFACTMCDKRFTFSSERKRHMTIHTGEKRHQCDVCGKAFNRSTNLTVHKRIHTGETPHKCGVCGKGFIQVHCLRTHLNTHNVVDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041103;
90% Identity: iTF_01041103;
80% Identity: -