Basic Information

Insect: Nebria brevicollis
Gene Symbol: -
Assembly: GCA_944739395.1
Location: CALYJC010000076.1:379329-382844[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6e-06 0.00015 22.9 0.7 1 23 180 202 180 202 0.99

2 12 0.00029 0.027 15.8 1.0 1 23 208 230 208 230 0.97

3 12 1.5e-05 0.0014 19.8 2.1 1 23 236 258 236 258 0.97

4 12 0.00018 0.017 16.4 1.4 3 23 272 292 270 292 0.95

5 12 0.00098 0.091 14.2 0.7 2 23 299 320 298 320 0.96

6 12 9.1e-07 8.4e-05 23.7 1.3 1 23 326 348 326 348 0.99

7 12 1.5e-06 0.00014 23.0 0.2 1 23 354 376 354 376 0.96

8 12 1.3e-05 0.0012 20.0 0.1 1 23 382 404 382 404 0.98

9 12 3e-07 2.8e-05 25.2 0.4 1 23 410 432 410 432 0.98

10 12 4.7e-06 0.00043 21.5 2.6 1 23 438 460 438 460 0.98

11 12 1.8e-06 0.00017 22.8 0.2 3 23 468 488 467 488 0.99

12 12 2.5e-06 0.00023 22.3 0.2 1 23 494 516 494 516 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6e-06	0.00015	22.9	0.7	1	23	180	202	180	202	0.99
2	12	0.00029	0.027	15.8	1.0	1	23	208	230	208	230	0.97
3	12	1.5e-05	0.0014	19.8	2.1	1	23	236	258	236	258	0.97
4	12	0.00018	0.017	16.4	1.4	3	23	272	292	270	292	0.95
5	12	0.00098	0.091	14.2	0.7	2	23	299	320	298	320	0.96
6	12	9.1e-07	8.4e-05	23.7	1.3	1	23	326	348	326	348	0.99
7	12	1.5e-06	0.00014	23.0	0.2	1	23	354	376	354	376	0.96
8	12	1.3e-05	0.0012	20.0	0.1	1	23	382	404	382	404	0.98
9	12	3e-07	2.8e-05	25.2	0.4	1	23	410	432	410	432	0.98
10	12	4.7e-06	0.00043	21.5	2.6	1	23	438	460	438	460	0.98
11	12	1.8e-06	0.00017	22.8	0.2	3	23	468	488	467	488	0.99
12	12	2.5e-06	0.00023	22.3	0.2	1	23	494	516	494	516	0.98

Sequence Information

Coding Sequence: ATGGATTTAAGTGTTTATTTAACAGCACCCTTGCAATTAGAGAAAATTTGCAGGGCCTGTTTAACCGAAAAAGGCGATATGAAGCCGTTATTTGGTGCTTGTTTAGACGAAATGCTTGTGTCATTCGCTAATATACAGGTCGGTGAAGGCGATGGTTTACCAAATCTTATGTGTGTACAGTGTGTTTTACAATGTAGTAGAGCGTacacatttaaacaattatGTGAAAGATCTGATTCGACGCTCCGACAATACATGACCCCAGAATTCCAGGATCAACTAGCAAGCGCAATCCATGAGCAACAAACTAAAGAAGAACTACAGGAACAATTACACTTTAATACTATTGAACCAGTAGAAATAATTGCTGATAATCTAAGTGAATATGTTACATATGATGATCATGATCAAGAATGCGAATTAGagGTAAAACCagatttatatgaaataaacacGATTGAGCCTCACGAAAATTTGGATGCGCAAACTTTACAAATTGTTGTCCCGAAAATTGAAGCAAAAGCGGAAGGAAATAGATATCAATGTACAAAATGTAATGAATCATTTTCGCTTAAAGTTGATTTAAAGgtACATATTTTGACGCACCCGAAAGAGAACGATCATATTTGTGAAATTTGCACGAAAGGTTTCTCATCGGCTCGCATTTTAAAACGACACTTGAAAATCCATTTAGATAAGAAACCGCATGTGTGTGAAATTTGTAATATGTCGTTTGCGGAAAGTTCCAATTTAAGCAAACATAAAAAGAAACATACGGGTGAGTTGCGAAATATCAAAGGTAAACCACATTTATGCTCTGTATGCGGCAGAGCTTTTAAGTGGGCGTCTAGTCTATCGAAGCACATGAAATATCACACTGGTCATAAGTTATTGAATTGTCAATTTTGCAATAAACAATATGTTGAGGCTCGAAGTTTAAGGATTCATTTGAGATCACATACAGGTGAGAGGCCTTATGTTTGTACTGTTTGTGAGAAAGGATTCACACAAGTTTGCAATTTAGAGAAGCATATGCGGGTACATACCGGGGAAAAACCATTTTTATGCACTATTTGCGGTAAAGGTTTTACACAATCTGGTTATGTGGCAATTCATATGCGGACTCATACAGGTGAACGGCCTTATGTTTGTCAAACATGTGGTAAAGGGTTCGCCGGCTCAAATACACTGGCAATACACCAACGTATACACACTGGCGAAAAGCCGTACGCGTGTGACTTATGTGGTAAATCGTTTAGTCGCCAAGAAACGCTAGTTATACATACGCGATCACATACTGGTATTAAGCCGCATGTGTGTTCGGTTTGTAATAAAGGGTTTACATCGTCTGGACATCTTTCGGGGCATATGAGGTCTCATACCGGTGAAAAACCACATGGATGCAATGTTTGTGGAAAACGATTTGCAGGCTCAAGTAGTTTGAAGATTCACATGCGTGGACATTCCGGCGAAAAGCCGTATGTTTGCAAATATTGTGGCAAGGCATTCGCGCAATCAAGTGCATTAGGACAACATAATTTAACACACACTGGTCAAAGGACAAAACATAGAATTGAAACAATTCAAGTTGCTACCATAGTAACTGCTGAAGATATTCCGGTACAAGTGACACAAATCACCCCactttaa
Protein Sequence: MDLSVYLTAPLQLEKICRACLTEKGDMKPLFGACLDEMLVSFANIQVGEGDGLPNLMCVQCVLQCSRAYTFKQLCERSDSTLRQYMTPEFQDQLASAIHEQQTKEELQEQLHFNTIEPVEIIADNLSEYVTYDDHDQECELEVKPDLYEINTIEPHENLDAQTLQIVVPKIEAKAEGNRYQCTKCNESFSLKVDLKVHILTHPKENDHICEICTKGFSSARILKRHLKIHLDKKPHVCEICNMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLNCQFCNKQYVEARSLRIHLRSHTGERPYVCTVCEKGFTQVCNLEKHMRVHTGEKPFLCTICGKGFTQSGYVAIHMRTHTGERPYVCQTCGKGFAGSNTLAIHQRIHTGEKPYACDLCGKSFSRQETLVIHTRSHTGIKPHVCSVCNKGFTSSGHLSGHMRSHTGEKPHGCNVCGKRFAGSSSLKIHMRGHSGEKPYVCKYCGKAFAQSSALGQHNLTHTGQRTKHRIETIQVATIVTAEDIPVQVTQITPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01275584;
90% Identity: iTF_01041095;
80% Identity: -