Basic Information

Insect: Nebria brevicollis
Gene Symbol: -
Assembly: GCA_944739395.1
Location: CALYJC010000183.1:87833-91163[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0033 0.3 12.5 1.4 2 23 90 111 89 111 0.96

2 26 1.9e-05 0.0017 19.6 5.5 1 23 116 138 116 138 0.98

3 26 1.8 1.6e+02 3.9 1.7 3 22 146 165 145 167 0.84

4 26 0.0003 0.028 15.8 3.4 1 23 172 194 172 194 0.98

5 26 0.00023 0.021 16.1 0.6 3 23 203 223 202 223 0.98

6 26 4.6e-06 0.00043 21.5 0.4 1 23 229 251 229 251 0.99

7 26 1.3e-06 0.00012 23.2 0.6 2 23 258 279 257 279 0.98

8 26 3.7e-06 0.00034 21.8 4.2 1 23 285 307 285 307 0.98

9 26 1.1 1e+02 4.5 2.7 1 14 313 326 313 329 0.86

10 26 0.076 7 8.2 0.5 1 13 362 374 362 384 0.84

11 26 0.11 10 7.7 1.1 2 23 392 414 391 414 0.95

12 26 0.00058 0.054 14.9 1.6 1 23 418 440 418 440 0.96

13 26 0.00042 0.039 15.3 1.6 2 23 449 471 449 471 0.97

14 26 9.1e-05 0.0085 17.4 0.5 3 23 479 499 477 499 0.96

15 26 6.6e-06 0.00062 21.0 0.8 2 23 506 527 505 527 0.97

16 26 1.1e-06 0.00011 23.4 1.1 1 23 533 555 533 555 0.98

17 26 0.0066 0.61 11.5 1.0 1 19 603 621 603 626 0.89

18 26 0.00036 0.034 15.5 0.3 1 23 632 654 632 654 0.97

19 26 0.061 5.7 8.5 0.2 2 19 660 677 660 680 0.92

20 26 0.081 7.6 8.1 2.3 1 23 687 710 687 711 0.95

21 26 0.015 1.4 10.4 0.3 1 23 714 736 714 736 0.98

22 26 2.6 2.4e+02 3.4 5.9 1 23 744 767 744 767 0.95

23 26 0.00026 0.024 16.0 0.3 2 23 774 795 774 795 0.97

24 26 1.3e-05 0.0012 20.1 1.9 3 23 803 823 802 823 0.97

25 26 3.6e-05 0.0033 18.7 8.9 1 23 829 851 829 851 0.98

26 26 0.0061 0.57 11.6 0.3 1 23 857 880 857 880 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0033	0.3	12.5	1.4	2	23	90	111	89	111	0.96
2	26	1.9e-05	0.0017	19.6	5.5	1	23	116	138	116	138	0.98
3	26	1.8	1.6e+02	3.9	1.7	3	22	146	165	145	167	0.84
4	26	0.0003	0.028	15.8	3.4	1	23	172	194	172	194	0.98
5	26	0.00023	0.021	16.1	0.6	3	23	203	223	202	223	0.98
6	26	4.6e-06	0.00043	21.5	0.4	1	23	229	251	229	251	0.99
7	26	1.3e-06	0.00012	23.2	0.6	2	23	258	279	257	279	0.98
8	26	3.7e-06	0.00034	21.8	4.2	1	23	285	307	285	307	0.98
9	26	1.1	1e+02	4.5	2.7	1	14	313	326	313	329	0.86
10	26	0.076	7	8.2	0.5	1	13	362	374	362	384	0.84
11	26	0.11	10	7.7	1.1	2	23	392	414	391	414	0.95
12	26	0.00058	0.054	14.9	1.6	1	23	418	440	418	440	0.96
13	26	0.00042	0.039	15.3	1.6	2	23	449	471	449	471	0.97
14	26	9.1e-05	0.0085	17.4	0.5	3	23	479	499	477	499	0.96
15	26	6.6e-06	0.00062	21.0	0.8	2	23	506	527	505	527	0.97
16	26	1.1e-06	0.00011	23.4	1.1	1	23	533	555	533	555	0.98
17	26	0.0066	0.61	11.5	1.0	1	19	603	621	603	626	0.89
18	26	0.00036	0.034	15.5	0.3	1	23	632	654	632	654	0.97
19	26	0.061	5.7	8.5	0.2	2	19	660	677	660	680	0.92
20	26	0.081	7.6	8.1	2.3	1	23	687	710	687	711	0.95
21	26	0.015	1.4	10.4	0.3	1	23	714	736	714	736	0.98
22	26	2.6	2.4e+02	3.4	5.9	1	23	744	767	744	767	0.95
23	26	0.00026	0.024	16.0	0.3	2	23	774	795	774	795	0.97
24	26	1.3e-05	0.0012	20.1	1.9	3	23	803	823	802	823	0.97
25	26	3.6e-05	0.0033	18.7	8.9	1	23	829	851	829	851	0.98
26	26	0.0061	0.57	11.6	0.3	1	23	857	880	857	880	0.93

Sequence Information

Coding Sequence: ATGAAACCAGAAGTGAAATTACTCGAGGATCAAATCTTAGATTTGCCAGTGTCAAAAATCACAATCGAACAAGAACTGTTGAATTTGTTCTCGGCAAACGATGAGCTTCTGCAAAATATCACAGAAACATTCATCCATGCCGACGACAACAAAGAACTGTCCACATACCCAACAAACTACGACAACAGTTTCCTAAACGACCCCATATTACCCAAACCACTAATTGACGATATGATACAACCCGAATTACAAGATGATACGAAATGGAATTGCGATGTTTGCGGTGATAAATTCCAACGGCGTTTCGATTTGAGGAATCACAAAAAAACACACGACGCCCCCGTTTTTGAATGCGAAATATGCTATAAAAAATTCAACCAAAAATCACACTTAACAATGCATCGTAAACGACATTTATcacaatattcaaattattgcGAACCGTGTGATAGAGGTTTTTATACGAAATCATCGTACGATAATCATTGTAATGTAACACATAATAATATAGCGCATGTTTGTGATACGTGCGGTCATAAATTAAGTACTATTTCGTCGTTGAAAGATCATATGAAGACGCATGAATCACGTGAGCGCACTGAAATATGTGAGATATGTGGCAAGACTTTTTTGAATGGTCGTAATTTAAGAAGTCATCTCAAAACGCATTCGCAGCTACGGAATTATGTTTGTAAAATTTGTGGTAAAAACGTAAGTGATAAGAAAACGTTAGACGTGCATTTGCGAACGCACTCTGGGGAGAAACCGATGAAGTGTGATGTTTGTGATAAAACGTTTGCGTCGAAAGGTTACATGAAGGCACATTTGAGAACGCACACGGGTATTAAACCGTACGCGTGTACACATTGCAACAAAAACTTCACGCAACGGTCCACGTTGACGATACATTTGCGATATCACACAGGTGATAGACCTTATATTTGTGCGACATGCGGCAAATGTTTCGGAACATTTTCAACTCGAAAATTGGAAACCGGCGAAGCCTTAGATTATATAAAACTCTTACACGAGGCCGATAATTTTATTGAAGTGTTTGGCACTAATAACCGTTGGTGTAGAGAATATCATTGCTCTACGTGTCCGAAAACATTCAACAGACTTAAAGCCAATTACGAACTACACTTAAAATCGTATCCCATCGACAAAGATACCTCATGCGACAAATGCGATTTGAGGTTTCATAgcattaaatcatatttaatacaCATCGCGAAAGTTCACACACATCAATTCTCATGTTACTCGTGCAACCAAACGTTCACTGATACCGAATCACTCAAAAAACATGTCCTACTTCACAACGACACATCCGCCACTGATCCACAATGCGAATTCTGTGGCAAACAATTCGGTTATAGCCAGAGTTTAGGTAGGCATATCCGTGTATGTCACCTTGATATATCATCTGTGATCTGCGATATATGTGGTAAAAAATTAACGTCAAAACGCAGCTTCCGGGACCATATGTCCATACATAACGGTGTCAAACCCTTAACGTGTCAATATTGTGGGAAAAATTTTACAGCCCGCAATACACTGATGATCCATATTAGGACGCATACGGGACAAAAGCCGTATTCGTGCTCTGTGTGCCCGAAAACGTTTCGACAACGTTCGTCTTTAGTGATTCATAATCGGACACATAGCGGCGAAAAGCCTTATGGTTGTAGTATTTGTCCGGAGAGATATAATGTGAGCCCTGATCAACTAGATTACTTTGCGGTTACATCCGCAGCGAATGAATTCGTTGAAATGTTAGGGCAAGATGGTCAAATAATCCGTAATTATTTATGTCCATGGTGTACGCAAACATTTACACACAGACAACAATTCATTAATCACGGCGTTGCAAGACACGTGACACTAAACAGTTTCTTCTGTCTCATTTGTGACAATGGTTTCAAATCCCAAACAGCGCTCAACTTACACATGAGTGTCCATAACGATGGGCGTGCGTATTGTAAGGTTTGTCACCAAGAATTTATCACAAAAGCGTCTGTACAAGAACACGCTATTAACTATCCGCCGGAGAAAGATTTCAATTGCACAAATTGTAAAGCAGTATACCACACTGATATGCAACTACAAGCTCACATAGAGAAAGAACATCACACGGAATACCGTTGCTTTTCTTGTGAGAAACTCTTCGAGGATACTAGTGCACTTTCAGTGCACGTTGTGACGCATAATGGAGACTCTTGCACGAAATTCCAATGTGAATATTGCGGCAAACTTCACAATACGAGACGGCAACAACGCCATCATGTCAATATGAAACATTTAGGGAAGGAGCAACGTGTTTGTGAATTTTGTGGCAAGATATTAGCGACTAATATGACCTTGAAGGAGCATTTAAGAACTCACACGGGCGAAAAACCAGAGATTTGCAATAAATGCGGTAAAACTTTCCGCAGAAAAGTTACGTTACTCAACCATTTTCTGACGCATACTGGCGAAAAACCGCATCAGTGTACACATTGCAAAAAGTCTTTTACGCAACGACATACGTTAGTTATTCATCTGAGAACGCATACTGGCGAACGGCCGTATGAATGCAGTATTTGTGGGGAGAAATTTGCTAGTTTACAGCCGATGAAGTTACATAAGAAAGCCAAGCATAATATGTTACAATTTTAA
Protein Sequence: MKPEVKLLEDQILDLPVSKITIEQELLNLFSANDELLQNITETFIHADDNKELSTYPTNYDNSFLNDPILPKPLIDDMIQPELQDDTKWNCDVCGDKFQRRFDLRNHKKTHDAPVFECEICYKKFNQKSHLTMHRKRHLSQYSNYCEPCDRGFYTKSSYDNHCNVTHNNIAHVCDTCGHKLSTISSLKDHMKTHESRERTEICEICGKTFLNGRNLRSHLKTHSQLRNYVCKICGKNVSDKKTLDVHLRTHSGEKPMKCDVCDKTFASKGYMKAHLRTHTGIKPYACTHCNKNFTQRSTLTIHLRYHTGDRPYICATCGKCFGTFSTRKLETGEALDYIKLLHEADNFIEVFGTNNRWCREYHCSTCPKTFNRLKANYELHLKSYPIDKDTSCDKCDLRFHSIKSYLIHIAKVHTHQFSCYSCNQTFTDTESLKKHVLLHNDTSATDPQCEFCGKQFGYSQSLGRHIRVCHLDISSVICDICGKKLTSKRSFRDHMSIHNGVKPLTCQYCGKNFTARNTLMIHIRTHTGQKPYSCSVCPKTFRQRSSLVIHNRTHSGEKPYGCSICPERYNVSPDQLDYFAVTSAANEFVEMLGQDGQIIRNYLCPWCTQTFTHRQQFINHGVARHVTLNSFFCLICDNGFKSQTALNLHMSVHNDGRAYCKVCHQEFITKASVQEHAINYPPEKDFNCTNCKAVYHTDMQLQAHIEKEHHTEYRCFSCEKLFEDTSALSVHVVTHNGDSCTKFQCEYCGKLHNTRRQQRHHVNMKHLGKEQRVCEFCGKILATNMTLKEHLRTHTGEKPEICNKCGKTFRRKVTLLNHFLTHTGEKPHQCTHCKKSFTQRHTLVIHLRTHTGERPYECSICGEKFASLQPMKLHKKAKHNMLQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -