Nbre010928.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000183.1:83003-85143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0013 0.13 13.7 0.5 2 23 9 30 8 30 0.97 2 20 0.015 1.4 10.4 0.1 2 23 36 58 35 58 0.96 3 20 0.00025 0.024 16.0 0.9 1 23 64 86 64 86 0.98 4 20 5.5e-06 0.00051 21.2 0.1 1 23 92 115 92 115 0.97 5 20 0.0057 0.53 11.7 3.9 1 23 120 142 120 142 0.94 6 20 0.013 1.2 10.6 2.9 1 23 151 173 151 173 0.99 7 20 3.2e-06 0.0003 22.0 0.1 1 23 178 200 178 200 0.98 8 20 7.8e-07 7.2e-05 23.9 1.9 1 23 206 228 206 228 0.98 9 20 1.4e-06 0.00013 23.1 0.3 1 23 234 256 234 256 0.97 10 20 2.9e-05 0.0027 18.9 2.4 1 23 262 284 262 284 0.98 11 20 5.4e-05 0.005 18.1 0.8 1 23 320 342 320 342 0.98 12 20 3.4e-05 0.0032 18.7 2.4 1 23 347 369 347 369 0.96 13 20 4e-05 0.0037 18.5 2.4 2 23 376 397 375 397 0.97 14 20 0.0046 0.42 12.0 4.2 1 19 403 421 403 426 0.91 15 20 0.052 4.9 8.7 6.0 1 23 431 453 431 453 0.97 16 20 2e-05 0.0019 19.5 0.5 1 23 462 485 462 485 0.98 17 20 1.2e-06 0.00011 23.4 0.4 1 23 493 515 493 515 0.98 18 20 1.5e-05 0.0014 19.9 0.9 1 23 521 543 521 543 0.98 19 20 6.6e-06 0.00061 21.0 0.6 1 23 549 571 549 571 0.98 20 20 0.0038 0.35 12.3 2.0 1 23 577 599 577 599 0.97
Sequence Information
- Coding Sequence
- ATGCGTCCAACCAAGAAGTTAACATCTTGCCGTGATTGCGGCGCCACATTTCCCAGCAAACGCGTCTTATATAACCACACCCTAACGCACATGGAAGCAACGGTCCCATGCGAATGGTGCGATAAACTCTTCGTAACGCAAGGCCGAGCAAATTATCACCAACGCGTTGTACATATACGTGACTTTAAATTCGAATGCGATATCTGCAATCGCAAATTTGTGTACGAAAAACTATTAGACGCGCACAAAAAACGACACTACGATCAGTTTCAGTATCCGTGCGATGATTGCGGCAAAGGTTACAGTACGAAAAGCGAATTTGACGAACACGTTCGCGTCCAACACGAAGGTTTACGTTATATTTGTTTTCCTTGCAATAAATCGTTCAAAAACCATTACTATTTCGGTTCACATATGAGGCTACACAATCCGAACTTAATACCAAAAGTATACAAGTGCAAATTGTGCTCGGCGACATTCGATAAAATCGGCTGCTTAAACGGTCACCGACGCAAACACCGAAACGACACTTACGTCTGCGATATATGTGGTAAAACGGTTTCAACGCCGAAAAGTTTGCGCGATCATAAAATGATTCACTCTGGCGAGAAGCCATTCACATGTCAAACGTGTGGCAagaatttcattaatcaaaattatttaacaacaCATATACGAAGTCACACGAAAGAAAAACCGTATGCGTGCAAGGAGTGTGGGAAAGCGTTTACGCAAATTAGTACATTACGTGTTCACGAACGGTTGCATAGCGGCGAGCGTCCATACTCGTGCGGTATTTGCcataagaattttatttcgaaaagcGCGATGAAAACGCACACGAAAGTTCATGGGACCGCGTTATCCGAATTAGCCGGTATGACCCTAAAGGCAAAACGTCCAGCACCACACGCCCGCATCCAAGTCATCGAGATCCAAGACGGCACCAAACGAAAATACATCTGCGAAATATGCTCACGTCCATTTAGCGATCGTCGCCAATTCACCATACACAATCGCAGCCACTCCGATCGTAACTACCAATGCGGCAAATGCACGAAGAAATTCCGATTTCCCTCACAACTAAAAACCCACGAAGTACGTCATCAAGCATCCGAAGAATTGAAATGCGACGAATGCAATAAACATTTCGCAAACACCGATACATTAATCTTGCACCGCAGACGCCATTTGAAAGATTACAGTTACCATTGTGACGATTGTAACAAAGGCTTCTACAATAACTCCGCGTACAAGACACATTGCGAAGTCGAGCACTTGGGCGTTACTTTCACTTGTGCCGAATgccacaaaatatttaaatgctcATACAACTATAACGAACACGTGAAACAACACGATCCGAATTATGTTCGACGTGAATATCAATGCGATAAATGCGAGAAAGTGTACCAAGTCGCGAATAGTTTGAAGAAACATATTCAAACCGTTCATGAGAAAACTTGGAAACACTTGTACATGTGTGATATTTGTGGCAAATCAGTCTCGAGCAAACTTAATTTGAATAATCACAGACGTATTCATACCGGTGAACGTCCGTATATATGTCAGAGTTGCGGCAAGAATTTTAAGAGCACTGAAGGTCTAATGAAACACGAACGTACACATACTAAAGTGAAACCGTATCCATGTAACGTGTGTGACCGTCAATTCTCGCAGCGAAGCTCATTGGTGGTGCATAGTCGCTATCACACTGGCGAACGGCCATACACATGTATTGTTTGTGATAAAAAATTTGTCACATTGACCCTGATGAAGTATCATAGAAAAACTCATGGCGTTACTGTTgataaaacataa
- Protein Sequence
- MRPTKKLTSCRDCGATFPSKRVLYNHTLTHMEATVPCEWCDKLFVTQGRANYHQRVVHIRDFKFECDICNRKFVYEKLLDAHKKRHYDQFQYPCDDCGKGYSTKSEFDEHVRVQHEGLRYICFPCNKSFKNHYYFGSHMRLHNPNLIPKVYKCKLCSATFDKIGCLNGHRRKHRNDTYVCDICGKTVSTPKSLRDHKMIHSGEKPFTCQTCGKNFINQNYLTTHIRSHTKEKPYACKECGKAFTQISTLRVHERLHSGERPYSCGICHKNFISKSAMKTHTKVHGTALSELAGMTLKAKRPAPHARIQVIEIQDGTKRKYICEICSRPFSDRRQFTIHNRSHSDRNYQCGKCTKKFRFPSQLKTHEVRHQASEELKCDECNKHFANTDTLILHRRRHLKDYSYHCDDCNKGFYNNSAYKTHCEVEHLGVTFTCAECHKIFKCSYNYNEHVKQHDPNYVRREYQCDKCEKVYQVANSLKKHIQTVHEKTWKHLYMCDICGKSVSSKLNLNNHRRIHTGERPYICQSCGKNFKSTEGLMKHERTHTKVKPYPCNVCDRQFSQRSSLVVHSRYHTGERPYTCIVCDKKFVTLTLMKYHRKTHGVTVDKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041080;
- 90% Identity
- iTF_01041080;
- 80% Identity
- -