Nbre007701.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria brevicollis
Gene Symbol
-
Assembly
GCA_944739395.1
Location
CALYJC010000119.1:136309-151860[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00011 0.0098 17.2 1.4 1 23 1202 1224 1202 1224 0.97
2 28 0.00012 0.011 17.0 0.2 1 23 1230 1252 1230 1252 0.98
3 28 3.4e-05 0.0032 18.7 1.8 1 23 1258 1280 1258 1280 0.99
4 28 0.066 6.2 8.4 3.6 1 23 1286 1308 1286 1308 0.96
5 28 7.3e-05 0.0068 17.7 1.3 1 23 1314 1336 1314 1336 0.98
6 28 0.00021 0.02 16.2 1.1 1 23 1424 1446 1424 1446 0.98
7 28 1.8e-07 1.7e-05 25.9 1.6 1 23 1452 1474 1452 1474 0.99
8 28 9.7e-06 0.0009 20.5 1.1 1 23 1478 1500 1478 1500 0.98
9 28 4.6e-07 4.2e-05 24.6 2.8 1 23 1506 1528 1506 1528 0.99
10 28 0.018 1.7 10.1 5.1 1 23 1534 1556 1534 1556 0.97
11 28 0.00038 0.035 15.5 0.5 1 23 1562 1584 1562 1584 0.98
12 28 0.0011 0.11 13.9 2.6 1 23 1590 1611 1590 1611 0.98
13 28 0.0036 0.33 12.4 1.4 1 23 1617 1639 1617 1639 0.98
14 28 0.094 8.8 7.9 2.1 1 20 1645 1664 1645 1666 0.93
15 28 0.00029 0.027 15.8 4.8 1 23 1671 1693 1671 1693 0.98
16 28 0.00019 0.017 16.4 5.9 1 23 1699 1721 1699 1721 0.98
17 28 2.8 2.7e+02 3.3 1.5 1 15 1727 1741 1727 1744 0.85
18 28 0.0001 0.0096 17.2 4.2 1 23 1993 2015 1993 2015 0.97
19 28 2.1e-06 0.00019 22.6 0.3 1 23 2021 2043 2021 2043 0.98
20 28 0.00012 0.011 17.1 3.2 1 23 2049 2071 2049 2071 0.99
21 28 1.6e-05 0.0015 19.8 6.3 1 23 2076 2098 2076 2099 0.95
22 28 0.0001 0.0093 17.3 2.2 1 23 2104 2126 2104 2126 0.99
23 28 2.5e-05 0.0023 19.2 0.8 1 23 2132 2154 2132 2154 0.98
24 28 1.5e-05 0.0014 19.9 3.9 1 23 2160 2182 2160 2182 0.99
25 28 0.0012 0.11 13.9 4.3 1 23 2188 2210 2188 2210 0.98
26 28 0.011 1 10.8 0.2 1 20 2216 2235 2216 2238 0.94
27 28 0.0005 0.046 15.1 0.1 1 23 2244 2266 2244 2266 0.98
28 28 1.3e-05 0.0012 20.1 4.3 1 23 2272 2294 2272 2294 0.98

Sequence Information

Coding Sequence
ATGATGGGGGAAATTAATGTGTGCAGGACGTGTTTGAAAGATTGTGTCGATTTGAAATCGTTGTATGAATCGTGTTCGCCGGATATTGTgatgtgtgtggcggaaatgCTGATGGCTTATACGCCATTGAGGTTCTACTCCAGCGATGGATTTCCAaagaatatttgttataattgcACGCAACAATTGCTCCAATTTAACAAATTCGTCCAAAAATGTCGTGAATCGGATACAACATTACGGAGTCAACCACAGAAAATGATCGAAAACACCTCTAACACCATTCCTGTCGGCCACATCACAGAAATAGACAATCGTATCAAGACGATCACGTATGAAAATGACAACTCTAGCGAAATTTCATCAGCAACTGTGAACGGTAAGAATTCAACGAAACAAAATACAAATCGCGTTAAAAGTTTAGCGCCTCTTAAACCACATTCAAACCAAGAGAATGTCACTTGCGATATTGCATCAGCAACTATGGATGGAAAGAATTCAACGACAAAATGTACAGATCTTGCAAATATCGATAGAAGTTTGACGCCAATAAAATCGTATCCAAACCTGAAGAATGATCAAGTTAAGGACAAACAATGCGAAACGGAGAGTCTTTATGTGAGTGGTAGCAGTATACGTGATGATGAGAGCCTTGCCTCGTACGTGACTAACGAAATTGATGTTTGTGGAGAGAATGAATCAGCAATTGAGGATGAACAGAATTCGGAACATAATATAGCTGGTGGTGAACTCTATAAGAGCTTGGTGTCTCTAAAGCCGTTTTCAAATCAGGCGAATGTTCAAGTTAACAACAAAGAAAGTGAGACCGGAAGCCTTTACGTCAATCCCAGTATACGTGATGATGAGAGCCTTACCTCTTACGTAACTTACAAAATTGATGTTTGTGGAGAGAATGAATCAACAATTGTGGATGATACTTGTAGAGAAAATACACCACCATCTGTGGATGGACAATATTCAactcaaaaaaatatatatgataaagTCGTTAAGGGTTTAGGGCCAATAAACCCGTATTTAAACCAGGAGAATGTTCTTGTTAAGAACAAACAATGCGAAGCGGAAAGGCTTTATATCAATCCCAACAATATACGCGATGATGAGAGCCGTGCCTCGTACGTGACTTACGAAATTGATGTCTGTGGAGAAAACGCATCAGCAGTTATGGATGGACTGAATTTAACAGATACAAATACAGATGTTGATATACTCCGAAAGAGTTTGGTGCCTCTAAAGACGTTTACTATCCTGGAGAATGTACAGGTTAACGACAATAGATGTGAAACAGGAAGTCTTTTTGTCAATCCCAGTATACGTGATGGTGAGAGCCTTACCTCATACGCGACTTTCGAAATTGACGTCTGTGGAGAAAATGTACCAGCAACTGTGGAAGATAAACTAGCGCCTCTAAAAACGTATACAAACCTGGAGATTGTTCAAGTTCAATGCGAAACGGAAAGCCTTTGTGTCAATCCTAGTGTACATGATGACGAGAGTCTTGACTCATACGTAACTTACGGACTGAATTCAGCGGGAAAAACTACAGATGTTGATAAACTCGTTAAGGGTAACgacaataaaaacgaaatgGAGAGTCTTTATGTGCACCGCAGCAGTATACGTGATGATGAGAGCCTTACCTCATACGCGACTTACGAAGTTGATATCTGTGGAGAAAATGCGTCAGCCATTGTGGTtgaacagaaaaataaaaatacagatGTTAATAAGAGTTTGGTGTTTCGAAAAACGTATTCGAACCTGCAGAATGTTCAAGTTACCGACAAACGATGTGAAACAGGAAGCCTTTATGCCAATCCTAGTAGTATACGTGATGATGAAAGCCTTGCGTCATACATGACTTCCGAAATTGACGTTAGTGGAGAAAACACATGCGTTAAGAGTGTGGCGCCACTAAAGACGTATTCAAACTTGGAGACTGTTCAAGTTCCCGACAAACAATGCGAAATAGGAAGCCTTTATGCCAATCCTAGTAGCATACGTAATGAGAGTCTGGAGTCATGCATGACTTCCGAAATTGACGTTAGTGGAGAAAATGCACGTGTTGAGAGTATGGCGCCACTAAAGACGTATTCAAACTTGGAGACTGTTCAAGTTCCCGACAAACAATGCGAAATAGGAAGCCTTTATGCCAATCCTAGTAGTATACGTGATGATGAGAGTCTGGAGTCATACATGACTTCCGAAATTGACGTCAGTGGAGAAAATGCACGCGATGAGAGTATGGCGCCACTAAAGACGTATTCAAACTTGGAGACTGTTCAAGTTACCGATAAAGGATGCGAAATAGAAAGCCTTTATGCCAATCCTAGCAGTATATGTGATGATGAGAGCCTGGCGTTGTACGTGAGTTGCGTACCGGAAACAAATACAGATGTTGATAAACTCAATCAGAGTTTGGCTCCTCTGAAAACGTATATAAACCTGGTGAATGTACCAGTTAGTAACAACCAATGCGAAATAGGAAGTCTTTATGTCAATCCCAGCAGTATACATGATGATGAGAGCCTTGCCTCTTACATAACTATCGAAAATGACATCTGTGGAGTAAATGCAGCAGCTGTGGATGGACAGAATTTAGCGGGAATGAATTCAAATTTAGAGAATGTTCCTGTTAACAACAAACATAGAGAAACAGGAAGTCTTTACGTCAATCCCAGCAGTATACGTGATGATGAGAGCATTGTTTCTTACATAACTAACGAAAATGACATCTGTGGAGTAAATGCAGCAGCTGTGGGTGGACAGAATTTAGCGGGAATGAATTCAAATTTAGGGAATGTTCCTGTTAACAACAAACAAAACGAAACAGAGAGTCTTTATGTGAATCCCAGCAGTATACGTGATGATGAGAATGTTCCtgttaacaaaaaacaaagCGAAACAGAGAGTCTTTATGTCAATCCCAGCAGTATACGGGATGATGAGAGCCTTGCTTCTTATATTACTAACGAAAATGACATCTGTGGAGTAAATGCAGCAGCTGTGGCTGGACAAAATTTAGCGGGAACGAATTCAAATCTGGGAAATGTTCCTGTTAACAGCAAACATAGCGAAACAGGAAGTCTTTATGTCAATCCCAGCAGTATACGTGATAATGAGAGCCTTGCCTCTTACACGACTAACAAAAATGACATCTGTGGGGTAAATACAGCAGCTGTGGATGGACAAAATTTAGCGGGAATGATTTCAAATCTGGGGAATGTTCCTGTTAACAACAAACATAGCGAAACAGGAAGTCTTTACGTCAATCCCAGCAGTATATGTGATGATGAGAGCCTTGCCTCATACATGTCCAAAGAAAATGATATCTGTGAAGTAAATGCAGCAGCTGTGGATGGACAGAATTCAGCGGAAAAGAATACTGATGTTGATAAACTCGATAAGGGTTTGGGGCCTCTAAACCCGTATGTAAGACTAGAGAATATTCGAGTTAAAGACAAACGCTGCGAAACGGAAAGTCTGATTGTCAATCGCAGCAGTACATGTGATGGCGAAAGCCTTGATTCATTCGTGACAATCGATAGTAGCGGAACCGAATATTCATGCCACAAGAAAACATACGATTGTTCAGTGTGCAAGAAAAAATTTGCAACTTCGTCACAACGAACGACCCATATGCTTGTCCACGCTAAAAAACCACATTTCgaatgtacaatttgcaaaAGCCCTTTTCGGCAAGAGGAAAAGTTAGCCGTTCACATGCGCGTCCATAAAAACGAACATCCCTACACATGCACAGTGTGTGAACGTAAATTTTCACTTAGCAGAAGCTTGAAAATACATCTTCGAACGCACAACCGAGAAAAACCCCACAATTGTACAATGTGTAAActgttttttaataaaaagcaGCGTTTGGTCGAGCACATGCGCGCCCATATCCGAAAGAAACGCTACCCATGCTCAGTGTGCAACTGTGAATTTGCACGGAAGGACTCCCTAAATAAACATCTAGGCACCCACGATAGCGAAAGCCTTGACTCATTCGTGACTTGCGAAAATAACACCCCTAAAAATAAAGCAGCTCTGGATGGGAAGAAAACAACTGAAAAAAATACTGAGAAACTCGATGAGAGTTTAGCGCCTTTAGAACCGCACTCAAATATTGAAGACAAACAATGCGAAACGGAAAGCCTTTTTGCCAATCGCAACAGTACACATGATTCGGAAAGCCTTGACTCATTCGTGACTGGTGAAGAAACTATAGAAAGTACTGAAAATGAATATGAATGCCCGCTGTGCGAGGAATCATTCCGATTTAAAAACTTTCTAACCTCACACTTGCAAAGTCACAACAGCAGGAAGCCATACACTTGTTCAGAGTGCAAACGGACATTTGCAACTCGGTCAAACCTAACGAATCATATGCAAGTCCACAAAACAAACTTCACATGTAAAATTTGCAATCGTTCCTTTCGTCGGGAGCTAAAATTGGTCATTCACATGCGCGTCCATACCAAGGAGAAACCATACCCGTGCACAGAGTGTGAACGTAAATTTTCACATTCGAGTAACTTGAAAGTACATCTTCGCACCCACAGCGGAGAAAAGCCACACAGTTGTAAAATTTGCAAACGTTCCTTCAATGAAAAGCAGTGTATGATCGCACACACGCGCATCCACACTAAAGAGAAACCCTTCCCATGCTCAGTGTGCAGCCGTGCATTTGCACGGAATGACGTCCTACATAAACATCTAGCAACTCACGCCGTAGGCAAACCACACAAATGTTCAATTTGCCGACGATCCTTCGATCAAGAGAACTACGTCATTCACATGCGCAACCATACCCATAAGAAACCCTTCTCATGCACAGTGTGCAAGcgtgaatatataaataagacCAACGTAATATTACATTTTCGAACTCACACCGGAGAAAAACCCCACAGTTGTTCGGTTTGCCACCGTGCTTTTGCTCTAAGAAAGCAATTGGTTGCTCACAAATGCGGCCAGACTCAACAATACTCATGCTCATTGTGCGATTGTAAATTTAAACGGCGCATCAccttaaataaacatattcgaAACCACCCCGCAGAAAAAGTCTACACatgtacaatttgcaaacGTTCCTTTTGTAAAAAGCGCGAAATGACCACTCACATGCGCCTCCACATCAAGCACACACCGTTCTCTTGCTCAGTATGCAAACGCGAATTTTCAAAATACTACAGCGCCAAAAGGACCGAAGAGGAGCCCGACATATTTGGGAAAAGCGGTGGtgtattaatgaaaaatttgtCGCCAAACACGAAAAGACGTAGGGAAAAGAAGATTATGGATGTAGTTTTAAGGGTGGACAACCGAGTGTGTTGGGGCAAGGGTTGTGGTTCGAACGCCGTTAgagttgtttttaaaatgtcgCTTGGTGTATTAATGGAGTTGAGGAATGTGTGTAGAACTTGTTTGATGGAATCGAACGATTTGAAATCGTTGTATGAATCGTGTTCGACGGAAATTGAAGAATGTGCGGCGGATATGTTGATGTCTCACACCTCATTGAGAtaCTCCTCCAGCGACGGATTGTCTACGAATATTTGCAATTGTTGCATAGAAGAATTGCTCCGATTTTACCAATTCATCCAAAAATGTCGTGAATCGGATAAGAAATTACGGATACATACACCGTTAATGATCAAAAGCACCGTTAACATGATTTCCATCGGTAATATCacaataattgaaaatgaaattaataatgaaaatgagCAAAATATACCGGAACATGAACCTGAAATTACAGCCGAACCGGTAATCTGCAGCGTTGTTACATCTGAAGCTGTGAATGGAATGAATTCAACGGAAATAAATGCGCTTGTTGAAAAGCGTGATAAGAGTTTGGCGCCTTTGAATCAGTCAAAAATGCGAAATGTTGCAATTAGCGAGAAACTAATCACAGAAAAACGTGAACGCAAACGAACGCATAAACATGTTTGCCCAATTTGTAACAGATCGTTTCAATTCAAAAGTTACCTAGCCAGACACATGCACAACCACATCAATAAGAAACCATATGCGTGTCCCGAGTGCAAGCGTGCATTTTCAAATATGACTAACTTAAACACACATATTCGAATCCACGCGCGAAAGAAACCCTACAAATGTTCAATATGCCAAAACGCGTTTAGCTTCAAGCACAACATGACCGAGCACATGCGCATCCACAACGTAAAGAGACACACATGTACAGTGTGCAATCgggacttttcacagaaaaacTCCTTGACTCGCCACATGCGCTCCCACCATGGCGCAGAACCCTACAAATGTTCGATATGCAAACAGTCTTTTAACAAAAGAAAAGACATGACCATTCACATGCTCAGCCACAACGAACAAAAACACTTCACGTGTGATGTGTGCAAGGGTAAATTTGCGCGGAAGAGTTCCTTAAAAGTCCATCTTCGAGTCCACAGTGACGAAAAACTCTATAAATGTGCAAAGTGCAAGCTTTCGTTTCGTTTCAAAAGCAATTTCACCAGTCACATGCGTATCCACAGCGTTGAGAAACCCTTCATATGCACAGTGTGCAATTGTACGTTTGCGCTGATGAGTGAATTGAAAAGGCATATGCACACCCACCCTAGAGAAAAACCCTACAAGTGTACGTTGTGCGAACGTTCATTTGAACTGATTGTGAATTTAAAGAAACATGTGCCCATTCACGCGTCAAAAACAACCTATATGTGTTCAATTTGCGAGGGTATGTTCAGTTCGAAGAAGGGTTTGGTCGTTCATTTGCGCATTCACACCGAAGAGAAACGCTTCGTATGCGCAGTGTGCAAACATGAATTTCGACAGAAGTCCCATCTTATTAAACATATCCGAACCCACACCCGTACAAGTGTCTAG
Protein Sequence
MMGEINVCRTCLKDCVDLKSLYESCSPDIVMCVAEMLMAYTPLRFYSSDGFPKNICYNCTQQLLQFNKFVQKCRESDTTLRSQPQKMIENTSNTIPVGHITEIDNRIKTITYENDNSSEISSATVNGKNSTKQNTNRVKSLAPLKPHSNQENVTCDIASATMDGKNSTTKCTDLANIDRSLTPIKSYPNLKNDQVKDKQCETESLYVSGSSIRDDESLASYVTNEIDVCGENESAIEDEQNSEHNIAGGELYKSLVSLKPFSNQANVQVNNKESETGSLYVNPSIRDDESLTSYVTYKIDVCGENESTIVDDTCRENTPPSVDGQYSTQKNIYDKVVKGLGPINPYLNQENVLVKNKQCEAERLYINPNNIRDDESRASYVTYEIDVCGENASAVMDGLNLTDTNTDVDILRKSLVPLKTFTILENVQVNDNRCETGSLFVNPSIRDGESLTSYATFEIDVCGENVPATVEDKLAPLKTYTNLEIVQVQCETESLCVNPSVHDDESLDSYVTYGLNSAGKTTDVDKLVKGNDNKNEMESLYVHRSSIRDDESLTSYATYEVDICGENASAIVVEQKNKNTDVNKSLVFRKTYSNLQNVQVTDKRCETGSLYANPSSIRDDESLASYMTSEIDVSGENTCVKSVAPLKTYSNLETVQVPDKQCEIGSLYANPSSIRNESLESCMTSEIDVSGENARVESMAPLKTYSNLETVQVPDKQCEIGSLYANPSSIRDDESLESYMTSEIDVSGENARDESMAPLKTYSNLETVQVTDKGCEIESLYANPSSICDDESLALYVSCVPETNTDVDKLNQSLAPLKTYINLVNVPVSNNQCEIGSLYVNPSSIHDDESLASYITIENDICGVNAAAVDGQNLAGMNSNLENVPVNNKHRETGSLYVNPSSIRDDESIVSYITNENDICGVNAAAVGGQNLAGMNSNLGNVPVNNKQNETESLYVNPSSIRDDENVPVNKKQSETESLYVNPSSIRDDESLASYITNENDICGVNAAAVAGQNLAGTNSNLGNVPVNSKHSETGSLYVNPSSIRDNESLASYTTNKNDICGVNTAAVDGQNLAGMISNLGNVPVNNKHSETGSLYVNPSSICDDESLASYMSKENDICEVNAAAVDGQNSAEKNTDVDKLDKGLGPLNPYVRLENIRVKDKRCETESLIVNRSSTCDGESLDSFVTIDSSGTEYSCHKKTYDCSVCKKKFATSSQRTTHMLVHAKKPHFECTICKSPFRQEEKLAVHMRVHKNEHPYTCTVCERKFSLSRSLKIHLRTHNREKPHNCTMCKLFFNKKQRLVEHMRAHIRKKRYPCSVCNCEFARKDSLNKHLGTHDSESLDSFVTCENNTPKNKAALDGKKTTEKNTEKLDESLAPLEPHSNIEDKQCETESLFANRNSTHDSESLDSFVTGEETIESTENEYECPLCEESFRFKNFLTSHLQSHNSRKPYTCSECKRTFATRSNLTNHMQVHKTNFTCKICNRSFRRELKLVIHMRVHTKEKPYPCTECERKFSHSSNLKVHLRTHSGEKPHSCKICKRSFNEKQCMIAHTRIHTKEKPFPCSVCSRAFARNDVLHKHLATHAVGKPHKCSICRRSFDQENYVIHMRNHTHKKPFSCTVCKREYINKTNVILHFRTHTGEKPHSCSVCHRAFALRKQLVAHKCGQTQQYSCSLCDCKFKRRITLNKHIRNHPAEKVYTCTICKRSFCKKREMTTHMRLHIKHTPFSCSVCKREFSKYYSAKRTEEEPDIFGKSGGVLMKNLSPNTKRRREKKIMDVVLRVDNRVCWGKGCGSNAVRVVFKMSLGVLMELRNVCRTCLMESNDLKSLYESCSTEIEECAADMLMSHTSLRYSSSDGLSTNICNCCIEELLRFYQFIQKCRESDKKLRIHTPLMIKSTVNMISIGNITIIENEINNENEQNIPEHEPEITAEPVICSVVTSEAVNGMNSTEINALVEKRDKSLAPLNQSKMRNVAISEKLITEKRERKRTHKHVCPICNRSFQFKSYLARHMHNHINKKPYACPECKRAFSNMTNLNTHIRIHARKKPYKCSICQNAFSFKHNMTEHMRIHNVKRHTCTVCNRDFSQKNSLTRHMRSHHGAEPYKCSICKQSFNKRKDMTIHMLSHNEQKHFTCDVCKGKFARKSSLKVHLRVHSDEKLYKCAKCKLSFRFKSNFTSHMRIHSVEKPFICTVCNCTFALMSELKRHMHTHPREKPYKCTLCERSFELIVNLKKHVPIHASKTTYMCSICEGMFSSKKGLVVHLRIHTEEKRFVCAVCKHEFRQKSHLIKHIRTHTRTSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-