Nbre010927.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria brevicollis
Gene Symbol
-
Assembly
GCA_944739395.1
Location
CALYJC010000183.1:78138-82560[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 0.00097 0.09 14.2 1.1 1 23 5 27 5 27 0.98
2 41 3.2 3e+02 3.1 0.0 1 19 35 53 35 55 0.83
3 41 6.8e-06 0.00064 20.9 0.7 1 23 63 85 63 85 0.98
4 41 1e-05 0.00095 20.4 0.9 2 23 92 114 91 114 0.97
5 41 8e-05 0.0074 17.6 0.4 3 23 121 141 119 141 0.96
6 41 5.1e-06 0.00048 21.3 0.3 1 23 150 172 150 172 0.97
7 41 0.00071 0.066 14.6 0.0 1 23 176 198 176 198 0.98
8 41 1.6e-05 0.0015 19.8 0.7 1 23 204 226 204 226 0.97
9 41 1.3e-05 0.0012 20.0 1.7 1 23 232 254 232 254 0.97
10 41 0.0027 0.25 12.8 2.2 2 23 287 308 286 308 0.97
11 41 0.19 18 6.9 5.1 2 23 314 335 313 335 0.89
12 41 2.7e-05 0.0025 19.1 2.0 1 23 341 363 341 363 0.98
13 41 0.086 8 8.0 1.1 1 23 369 392 369 392 0.94
14 41 7.5e-07 6.9e-05 24.0 1.9 1 23 397 419 397 419 0.98
15 41 0.002 0.18 13.2 0.7 1 20 430 449 430 451 0.94
16 41 5e-05 0.0047 18.2 6.1 1 23 458 480 458 480 0.98
17 41 0.0022 0.21 13.0 0.2 2 23 487 509 486 509 0.96
18 41 5.3e-05 0.005 18.1 0.9 2 23 515 536 514 536 0.97
19 41 0.00019 0.018 16.4 1.2 1 23 545 567 545 567 0.98
20 41 0.0002 0.018 16.3 0.0 1 23 572 594 572 594 0.98
21 41 1.4e-05 0.0013 20.0 1.4 1 23 600 622 600 622 0.98
22 41 2.8e-06 0.00026 22.2 5.2 1 23 628 650 628 650 0.98
23 41 6.7e-05 0.0062 17.8 2.0 1 23 656 678 656 678 0.98
24 41 0.91 84 4.8 2.4 2 23 689 710 688 710 0.95
25 41 3.6e-05 0.0034 18.7 0.6 2 23 716 737 715 737 0.97
26 41 6.3e-06 0.00058 21.1 0.8 1 23 743 765 743 765 0.98
27 41 0.055 5.1 8.6 0.0 2 23 772 794 771 794 0.95
28 41 2.1e-05 0.002 19.4 0.9 1 23 799 821 799 821 0.99
29 41 0.35 32 6.1 3.1 1 23 836 856 836 856 0.94
30 41 1.2e-06 0.00012 23.3 0.2 1 23 862 884 862 884 0.98
31 41 2.8e-06 0.00026 22.2 0.6 1 22 890 911 890 911 0.97
32 41 0.032 3 9.4 5.2 1 23 923 945 923 945 0.95
33 41 0.0006 0.056 14.8 0.5 1 23 950 972 950 972 0.97
34 41 1.1e-05 0.00099 20.3 0.5 1 23 978 1000 978 1000 0.98
35 41 0.0077 0.71 11.3 9.2 1 23 1006 1029 1006 1029 0.98
36 41 0.015 1.4 10.5 0.3 1 23 1034 1056 1034 1056 0.95
37 41 5.8e-05 0.0054 18.0 0.8 2 23 1066 1087 1065 1087 0.96
38 41 0.0021 0.2 13.1 0.4 1 23 1092 1114 1092 1114 0.98
39 41 0.017 1.6 10.3 0.1 1 23 1120 1142 1120 1142 0.96
40 41 1.3e-06 0.00012 23.3 3.3 1 23 1148 1170 1148 1170 0.98
41 41 1.2 1.1e+02 4.4 0.8 2 23 1177 1198 1176 1198 0.95

Sequence Information

Coding Sequence
ATGAAGACATCTCATAAATGCGACGAATGTGGTAGCGTGTTTAAAAGTCTAATTTCGTATAAAGTCCACGTCCAGTCGCATGATCCACGTTTTGTTAAACGATACCCGTGTAATGTGTGCAAGAAGATACTATACGCTGAGGTTGATCTCGTCTGGCACAAAGCTAACAATTGCATTGCAGCGCTCTATGCTTGTGAATTGTGCGATAAAAAATTCAACGACAAAAGTGGATTGACAGTGCACAGTCGCCGACACACAAATAACTATTCAGTGAAATGTGACCAGTGCAATAAAGGATTCTACAATAGTAGCCAATATCAAAACCATGTACGCACTGTGCATACTAAAGAACGCGTCAATTGCGTACACTGTCCCAAAACGTTCGCGACTCCAGCCAATTATGCGCAGCATTTAAAATTGCATGATCCCAACATGCATTTGAATAAATTCAAATGTCCTAAATGCGAGAAAATCTTCAATAATCGGGACGCATTGCGTATTCACATCGGTCGACATAATAATTCGTTTGTGTGTTATGTGTGCGGGAAAGTATTGACTGCGGCTGCAAGTTTAAGAGACCACGTCCGTATTCACACCGGCGATAAACCCTATTCGTGTACCACATGTGGTACAGCGTTCCGCACGACGAGTTTGTTGAGGGCTCATCGAACGGTACACAATAATAAAAAGCCGTTTGCTTGTAGGCAGTGTGGTAAATCGTACTCGCAATACAGCAGTTTATCAGTGCATCGAAAGACTCACACGGGCGAACGTCCATACTCGTGCCATTTTATATCTTATCTTACTCAACAAGAATCTCTTGACAGGAAGAAGAAATCCAAATCGTCAGGACGTCTAAAATGCGATACATGCACCAAAGAGTACACAGACCGAATCAAATACGCCAAACATAAACGCACGCATAACCCGCGGACGTTATCGTGTGTGCATTGCGATAAAAAGTTCCATTTCGAGCATCAGTTGAAAACGCACGAGGTCGCTCACTCGGACGATAAGTCATACGCGTGCGGGTTATGCGAAAAGAAATTCAAAACGAAGAAAAGTCTCGAGATGCACCAGAAACGTCATCTAAACGATTACAAATTCAAGTGCGCTACTTGCGGCAAAGGCTTTTATGAAATTCACGTTTACCGTGAACATGTTAAGGTGAACCACAGCGGTTTCCGGTACAAGTGCGACAAATGCGGCAAATCGTTTAAGACGGCCAGCTCGTACAAATTACACGTCCAGTCACACGATCCCAATTTCGTCAAGCCGGCCGAGAAACACCAGTGCGACGTGTGCCACAAAGTATTCCGAATCGCGTTTGATCTAACCGCACACAAAGATAACAATTGCGTCGATCCAATCTACAATTGTGATTTGTGCGACAAAAAGTTCCGGCACAAGTTCAATTTGATGAAACACAGTCGCAGGCACACGACGAACTACGCGATAAAATGCGAAGAATGCGATCGAGGTTTCTTCACGAAACCCGAGTATTACGATCACGTACGTGTGACACATACAAAAGAACGGATCCAGTGTGTGCACTGTCCCAAAACGTTTGCCACCCAAGCCAATTATGGGCGGCATTTGAAACTGCATGATCCAAACATGCATTTGATCGAATACACGTGTCCGAAATGCCAGAAAATGTTCCATAATCGGGACGCGTGGCGTGTGCACGTAGCCAGGCACGATAATAATTCGTTCGTGTGCGATGCTTGCGGGAAAACACTAACAACGGCTGCAAGCTTAAGGGATCACGCTCGTGTGCATACCGGGGCAAAACCATTTCCATGCTCATCGTGTAGCAAGTCGTTTCGAACTATTGCGTCTTTGAAGACTCACTTACGCACTCATACCAATGAGAAACCGTTTATTTGTTGTGAATGCGGCAAATGTTTTACTCAACAAAGCACGTTGACAGTGCATCGCAGGATTCACACGGGTGAACGCCCATACCCGTGTGATATCTGTCAAAAGCGATTCTTTACGAAAACACTAATGAAAAGTCATATTAAATCTCACGGCGTGTGCCCCCAGACGCTACCGACCCTTAAATGCGATATATGCTGCGGAGAATACGCGGATCGTACGAAACTAACCAAACACAAACGCAGCCATCGAGTACCTAATATACCATGTTCAATTTGCAAGAAAAAATTTCGTAGTCCATATCAAGTACGATTGCATCAATTGACGCACACCAACGAGCGTTTTTATCCGTGCGATATTTGCTCGAAATCATATAAAACCAAATACGGTTTGAACCAGCATCAGGCGCGTCATCTAGGCGATTACAAAATGAAATGTGTCGTTTGCGGTAAAGGTTTCTACGAGGCGCCACCGTACCAAGAACACTTGAAAGTTGTGCACGGTGGCTTTCGTTACAAATGCGAATATTGCGATAAAGTCTTTATGACAGATGGctattataaaatacactTACGAATCCATAAACCAGGTTAtgtgaaaatgaaaataacgCGCCGTCGAGAGTTTTGTTGTGAAGTTTGTGGCAAAACAATCACATCGAGTTTGCATGATCACATGCGAATACATTCGGGAGAACGTCCGTTTGTGTGTGACGTATGCGGCAAGCCGttcaataaaaaatcattGCTTAAAGTGCATGAGCGTATCCATAACAATATTAGAAACTACAAGTGCGACCAATGCCCGAAAACGTTTACGCAACGAAGTACGTTGGTCATACATTTGCGGCGTCGCAAACGCACAAAAGTGGACCCATCAGATCCGCACATTTGTACAATTTGCCAAAAAGACTTCCCCGATCATCACCGTTTGTTAAATCACATGTACAATCACAAAGAGAAACGTTACGCGTGTGCGTTATGCGGCCAACGATTCTACTTCGAAGCAAAACTACGGAACCACCAAAAAATCCACGACGAGATCAAACAATTCGTATGCGATCAATGTGACAAAGCGTTCGCCAAGAAGGACAGTTTACAAGTGCACAAATTGCGGCACGCCGGCATTATACCATTCAAATGTCTACATTGCGATCGTGGCTTCTACAAGAAGCACGATTTTAAAAACCACATAAAAGTCTGTCACGACGGCGTCAAATACATATGCTTTCCATGCAACAAATCGCTAACAGACGTCGCGTATTACGCTCAACACATGCGTACGCACGATCCGAGTTACGAGGAGCAAGATTTGATATGTCCAATTTGCGATAAAGTCTATAAAAACCGGGTCAGTTTTCGTTTGCACAAGAAGCGACACGAGGGTTTTAGTTTCGTTTGCGATATATGCGAGAAAAAAGTCGGTTCGAAAAGCCGTTTGGCGGAACATAAGCGCAAACATACCGGCGAAAAGCCTTATATTTGTCAGGCGTGTGGTAAGGGTTTCGCAAGCGGACGCACGTTGGCGGTACATTTTCGCGCGCACACGGACGAAAAACCGTTTTCATGCACTGAATGCAAGAAAACGTTTACGCAACGTAGCTCGTTGAGCATGCATATGAAATCACATACGGAGGATGAGTTGATTAAATGTcatatttgtttgaaatggGTTTATACTAAACCTGAATTTTTGGTGCATTTAAAGAGCCATGGAGTTGAGGAAGATGAACatagttaa
Protein Sequence
MKTSHKCDECGSVFKSLISYKVHVQSHDPRFVKRYPCNVCKKILYAEVDLVWHKANNCIAALYACELCDKKFNDKSGLTVHSRRHTNNYSVKCDQCNKGFYNSSQYQNHVRTVHTKERVNCVHCPKTFATPANYAQHLKLHDPNMHLNKFKCPKCEKIFNNRDALRIHIGRHNNSFVCYVCGKVLTAAASLRDHVRIHTGDKPYSCTTCGTAFRTTSLLRAHRTVHNNKKPFACRQCGKSYSQYSSLSVHRKTHTGERPYSCHFISYLTQQESLDRKKKSKSSGRLKCDTCTKEYTDRIKYAKHKRTHNPRTLSCVHCDKKFHFEHQLKTHEVAHSDDKSYACGLCEKKFKTKKSLEMHQKRHLNDYKFKCATCGKGFYEIHVYREHVKVNHSGFRYKCDKCGKSFKTASSYKLHVQSHDPNFVKPAEKHQCDVCHKVFRIAFDLTAHKDNNCVDPIYNCDLCDKKFRHKFNLMKHSRRHTTNYAIKCEECDRGFFTKPEYYDHVRVTHTKERIQCVHCPKTFATQANYGRHLKLHDPNMHLIEYTCPKCQKMFHNRDAWRVHVARHDNNSFVCDACGKTLTTAASLRDHARVHTGAKPFPCSSCSKSFRTIASLKTHLRTHTNEKPFICCECGKCFTQQSTLTVHRRIHTGERPYPCDICQKRFFTKTLMKSHIKSHGVCPQTLPTLKCDICCGEYADRTKLTKHKRSHRVPNIPCSICKKKFRSPYQVRLHQLTHTNERFYPCDICSKSYKTKYGLNQHQARHLGDYKMKCVVCGKGFYEAPPYQEHLKVVHGGFRYKCEYCDKVFMTDGYYKIHLRIHKPGYVKMKITRRREFCCEVCGKTITSSLHDHMRIHSGERPFVCDVCGKPFNKKSLLKVHERIHNNIRNYKCDQCPKTFTQRSTLVIHLRRRKRTKVDPSDPHICTICQKDFPDHHRLLNHMYNHKEKRYACALCGQRFYFEAKLRNHQKIHDEIKQFVCDQCDKAFAKKDSLQVHKLRHAGIIPFKCLHCDRGFYKKHDFKNHIKVCHDGVKYICFPCNKSLTDVAYYAQHMRTHDPSYEEQDLICPICDKVYKNRVSFRLHKKRHEGFSFVCDICEKKVGSKSRLAEHKRKHTGEKPYICQACGKGFASGRTLAVHFRAHTDEKPFSCTECKKTFTQRSSLSMHMKSHTEDELIKCHICLKWVYTKPEFLVHLKSHGVEEDEHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-