Basic Information

Insect: Nebria brevicollis
Gene Symbol: ab
Assembly: GCA_944739395.1
Location: CALYJC010000089.1:790385-794772[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00073 4.2 8.4 0.1 15 43 288 313 281 314 0.76

2 5 2.7e-06 0.015 16.2 0.4 19 44 322 344 317 344 0.92

3 5 0.025 1.4e+02 3.5 2.3 18 44 353 376 348 376 0.90

4 5 0.00025 1.5 9.9 1.7 13 43 432 459 421 460 0.84

5 5 0.0019 11 7.1 0.1 17 29 468 480 461 491 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00073	4.2	8.4	0.1	15	43	288	313	281	314	0.76
2	5	2.7e-06	0.015	16.2	0.4	19	44	322	344	317	344	0.92
3	5	0.025	1.4e+02	3.5	2.3	18	44	353	376	348	376	0.90
4	5	0.00025	1.5	9.9	1.7	13	43	432	459	421	460	0.84
5	5	0.0019	11	7.1	0.1	17	29	468	480	461	491	0.80

Sequence Information

Coding Sequence: atggATAACAATATTAGGCAGTACGCGTTAAAATGGAATGATTTCCACGTAAAATTAACATCGTCGTTTCAATATTTACGAAATGAGTTCGATTTTATAGACGTTACTCTTGCAGGGGATGGTTACTCATTCTCGGCGCACAAAGTGATTTTGTCGGCGTGCAGTCCGTATTTTCGGCAATTGTTGAAAGCGAATCCGTGCCAACATCCGATAATAATACTGCGCGATgtgaacaaacaaaatatggAGAACTTGTTAATGTTTATGTATAATGGTGAAGTGAATTTGGAACATGAACAACTCGCTGATTTTATCAAAGCGGCACAGTTGCTAAAGATCCGTGGCTTGGCTGATATTAAAGATACGTTCGCGCAACTTGAGAGCGAATCGTTCGGAAATGAAGATTCTACGGCGACCGTAACGCGATCGCAAGAGAAGTTTActgcaaacacacacaaatatgaACAACCGATGGCTACACCAGTTCCAGCATCTGAACTTATTCTACCAAACTTGATTCCTGAACCAGATCCGCACTCTATGGAAGTACCATCATCGTCACATGAACCAGAgcaaattgataataaaatagcAATCGTCAATTTGATCGAACCAAAACAAGAATTAATCGATGAAGACTTATCGCTAGAAGATGTGTGTAGTGCAGAAGATATAAGTAACATGTCTTCAATGTCAAATCAATCATATAACGACCACGACCAAGGGAACAACGGTAACGATACAGCAACAACATCCAACCAAAGTccaccaggatcatctgaTTTAAAGCGGCCCCGAGTATCGATAGACTCAAATCGGCACCTGGTTCGAGAAAGAAAACGCACGATGCCCTATCAACTGTATCAAATCCAATGCGGCGATTGTGGATACACGTCAACGTCGCCGGGAAATTTGCGTCAACACATACGCACAAAACACGATCCAAACCGTCCAGTTTTCCTCTGCAATTATTGCAATAAAAGATATTCGTCCCCGAGTAACCTACGAGCGCACGTTAAAAACGTACACAGCGCCGTATCGGTGGAAAAGTGGCCTAAGTGTACAATGTGCGACAAAAAGTTTAAAACGTTACATTACCTACGAACTCACGTGTACCATCAACATAATGTTCGAGTTTTGAAAAAGAAACTTAATTTAAAAGCAGAGCTACCAAAAGTGAGAAATCGCAGGACGGCGTCGTACGAATTGGCTGAGATCCGTTGCGTCGATTGCGGATATATGGCAGAGACGCCGGGCAGTTTACGCAAACATGTCTACATCAGACACAACCCCAATCGACCGAAATACACATGTGCACTGTGTAGTAACACGTACTCGACGCAAAGTAATCTCAAATCGCACGTTGATAATGTGCACGTTGAAGTGCCGATTGAACAATGGCCCAAGTGTCAGCATTGcaataagaaatttaaaacgCAACATTACTTAACGGTACACGAGTATCAAGCGCATTCGATTCGAAagtttaagaaatataatcgtatttaa
Protein Sequence: MDNNIRQYALKWNDFHVKLTSSFQYLRNEFDFIDVTLAGDGYSFSAHKVILSACSPYFRQLLKANPCQHPIIILRDVNKQNMENLLMFMYNGEVNLEHEQLADFIKAAQLLKIRGLADIKDTFAQLESESFGNEDSTATVTRSQEKFTANTHKYEQPMATPVPASELILPNLIPEPDPHSMEVPSSSHEPEQIDNKIAIVNLIEPKQELIDEDLSLEDVCSAEDISNMSSMSNQSYNDHDQGNNGNDTATTSNQSPPGSSDLKRPRVSIDSNRHLVRERKRTMPYQLYQIQCGDCGYTSTSPGNLRQHIRTKHDPNRPVFLCNYCNKRYSSPSNLRAHVKNVHSAVSVEKWPKCTMCDKKFKTLHYLRTHVYHQHNVRVLKKKLNLKAELPKVRNRRTASYELAEIRCVDCGYMAETPGSLRKHVYIRHNPNRPKYTCALCSNTYSTQSNLKSHVDNVHVEVPIEQWPKCQHCNKKFKTQHYLTVHEYQAHSIRKFKKYNRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039397;
90% Identity: iTF_01039397;
80% Identity: iTF_01039397;