Nbre008804.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000133.1:336585-337823[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-13 6.9e-10 39.4 0.0 4 37 18 51 15 58 0.91
Sequence Information
- Coding Sequence
- ATGCCTCGAATGTATCAACGAAAAACGAATCGCTACACTTGGAGCGAATGCGATATTGAAAAAGCGTTTGCCGCAATTCGAAACGATAAACTCGGAATTCGGAAAGCGGCTGCGAAATACGGTATACCGTACACGACGCTCCAAGCTCGCATCAGCGATAATTGGCGTTCGAGCAAAAAGAAGCTAGGCCGCAAATATGTGTTTAATGAAACGCAAGAAACTGAGATTGCGCACTTGATTTTGGATTTGACGGAACAAACGACACCAAGTTCGATGGATGTGCGCCGGCTGGTGTACGATTACGCTGTGAAACATAATGTGCCGCATGCGTTTAACAGGGAGAGGAAAGAGTGTGGTAAAGAATGGTTGCTGTCGTTTTTAAAGCGGTACccgaaaattaaaattggtcGTGGCGAACAAATCGATGAGTCTAATACAAAAAAGTTGAATCACAAATCACTCGATATGTTTTATGATAAGATTGAGTTGATTGTTAAGGATAATAAGTTGGAGCCGTATCAGATTTTCAATGTGGGGACAATTCAGATTGTTGGGGATTCTATAAAAGGTGctaaaatcaaaataagtGATTGTTACCAACCGGTAACTAGTTTCTTTAGTGTAACAATATGTATAAGTGGAATTGGACAATATATCCCAccgatgtttatatttaaggAGTGTATTAAACAGAATTTGTCTGGTCCTATAGGGGCGATTTATAAAGCGTCGCCAACTGGTTTAATGTGCGACGAATTATTTCTAGATTGGTTGCAACATTTCGCGAAATACTCGAAATGCACTCCTAAAAATCCTGCGCTCCTAATAATTGACAATCAAAGTATTTGTGCGAATGTGTTCGCAGTGAAATACTGTCGGGAAATTGGGATcgaattaatttcaattgcAATCAGTGGAACTcttaaattatttccgttAGAGCTCAGTGTCTTTGAACCgttacaaaaatgttttcaaattgATTTGAACGAATCGCAAAATTTAATTCAAGTGTTTAAACATTCGTATTATAAAACCGCCACTTTAGGGAACGCAATTAGTGGTTTTCTAGAATCTGGGATCACTCCATTTAACCGACTTTTAATATTCGATCGAATTGAAAATACACCTGGTTCGAGTTCGAATTTAGAGACTGATAACTCACATCTAGTTgatgaacaaacaaaaaacgaaATCGAACAAATCAATTTCGAAGAAGTGTTTCTACCAATTGACTAA
- Protein Sequence
- MPRMYQRKTNRYTWSECDIEKAFAAIRNDKLGIRKAAAKYGIPYTTLQARISDNWRSSKKKLGRKYVFNETQETEIAHLILDLTEQTTPSSMDVRRLVYDYAVKHNVPHAFNRERKECGKEWLLSFLKRYPKIKIGRGEQIDESNTKKLNHKSLDMFYDKIELIVKDNKLEPYQIFNVGTIQIVGDSIKGAKIKISDCYQPVTSFFSVTICISGIGQYIPPMFIFKECIKQNLSGPIGAIYKASPTGLMCDELFLDWLQHFAKYSKCTPKNPALLIIDNQSICANVFAVKYCREIGIELISIAISGTLKLFPLELSVFEPLQKCFQIDLNESQNLIQVFKHSYYKTATLGNAISGFLESGITPFNRLLIFDRIENTPGSSSNLETDNSHLVDEQTKNEIEQINFEEVFLPID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01040785;
- 90% Identity
- iTF_01040785;
- 80% Identity
- -