Nbre003014.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- retn
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000028.1:194004-206467[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-26 6.5e-23 81.8 0.0 2 89 111 196 110 196 0.96 2 2 5.2 1.4e+04 -2.5 0.0 32 38 341 347 320 366 0.62
Sequence Information
- Coding Sequence
- ATGGTTGCTGTTGTAATCGCCAGTAATGTGGTGTTAAAACATCGGCCATTGTTGTGCGGCGGGGTCCGGCCAGGCCCATCTATCTTTACAAGTTACTTCAGTTCTTCAGGCGATTCTGATATGTGCGTACTCCACTCTGGCCAATCGGTCAGTACAAATTATTCATTCGATCCGAGGTGGCGGACACCCTCTCGGCCCAACTGGACGGCTGGAAAAACATCTTTGTAccattataaattacaaattacgtTATTTCGTATCTTCACTTTAATTATTCTTGCTCAGGATGAATGGGAATTATTGTTGTATGAAATCAATGACGACCCCAAACGAAAAGAATTCCTGGATGATCTGTTCACCTTCATGCAAAAACGTGGTACACCAATAAATCGACTGCCCATAATGGCGAAGTCTGTTCTCGATTTGTATGAACTGTACAATTTAGTGATTGCCCGAGGGGGCCTCGTTGACGTCATCAACAAGAAGTTATGGCAGGAAATAATTAAGGGGCTGCACTTACCATCTTCCATTACTTCGGCAGCGTTCACACTACGTACACAATATATGAAATATCTATACCCGTACGAGTGTGAAAAAAGACGCCTGAGCACTCCTGCAGAGCTCCAAGCAGCTATCGATGGCAACAGAAGAGAAGGTAGACGGAGTAGTTATGGAACCTACTCAGAAATGGTGCAAAGGAGCCCGATCCCCTCGTCACAAATGTCCCCCTTATCGCTGGTGACGCAGCAACAGAGTTTAGCAGGCCGAGGAGGCATGGGTGCTGGTTTGGGGCTGCATAATGGGGCGCACCACCCTAGCCATCCGCAACCGTTGGGGCAACCACCCACGGGCGGTCCAGTACCGGGCCTAGCCCCTTCAGAGTTCGAAGCCCGAATGGTCGAATACGtgaaactattaaataaagaacTGCGAAGTTCTGCTGCCACACCACCCAGGCAAGGCTCTTCATCACCACCAACCGCCACATCACCACTCAACCCCCTAGAAATGTCCCGCCTAACATTATGGAATTTGTACAATAACAATCCGACACCTCCCTGCCCCGAACCTCAAAAGGAGCCCTTAAATTTGGCTGAATCCACCCTGGCTGTGGCGAATTCGGTCAAACGGGAACCCGAACGTGACCCACCACCGCCCGCCAAACGGTTAGCCCACGAGGAGGACCGAAGAAGTCCAAATACCACACCAAATACCCACATCAAAATCAACAGTAGGGGTGACGCACGGAATGGAGACAATTCGTTGGTAGTTAGTATGGAATTAAATGGTGTTATGTACCAGGGGGTTTTATTCGCGCAGTCTCCCCCGGCAGCGCGCACGGCGCGTTTAACGTCttga
- Protein Sequence
- MVAVVIASNVVLKHRPLLCGGVRPGPSIFTSYFSSSGDSDMCVLHSGQSVSTNYSFDPRWRTPSRPNWTAGKTSLYHYKLQITLFRIFTLIILAQDEWELLLYEINDDPKRKEFLDDLFTFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYSEMVQRSPIPSSQMSPLSLVTQQQSLAGRGGMGAGLGLHNGAHHPSHPQPLGQPPTGGPVPGLAPSEFEARMVEYVKLLNKELRSSAATPPRQGSSSPPTATSPLNPLEMSRLTLWNLYNNNPTPPCPEPQKEPLNLAESTLAVANSVKREPERDPPPPAKRLAHEEDRRSPNTTPNTHIKINSRGDARNGDNSLVVSMELNGVMYQGVLFAQSPPAARTARLTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -