Basic Information

Insect: Nasonovia ribisnigri
Gene Symbol: ush
Assembly: GCA_027563275.1
Location: JANEHQ010000408.1:134913-149136[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.022 2.7 9.5 0.1 1 20 162 181 162 183 0.93

2 8 2.5e-05 0.0029 18.8 2.5 1 23 235 257 235 257 0.99

3 8 0.05 5.9 8.4 1.2 2 20 282 300 282 302 0.93

4 8 0.31 37 5.9 3.2 2 21 700 719 699 720 0.94

5 8 0.00034 0.041 15.2 0.7 1 20 774 793 774 795 0.95

6 8 0.0016 0.19 13.1 0.1 2 23 840 861 839 861 0.95

7 8 0.00084 0.099 14.0 0.6 1 23 867 889 867 889 0.98

8 8 0.069 8.2 8.0 0.4 2 21 1049 1068 1048 1069 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.022	2.7	9.5	0.1	1	20	162	181	162	183	0.93
2	8	2.5e-05	0.0029	18.8	2.5	1	23	235	257	235	257	0.99
3	8	0.05	5.9	8.4	1.2	2	20	282	300	282	302	0.93
4	8	0.31	37	5.9	3.2	2	21	700	719	699	720	0.94
5	8	0.00034	0.041	15.2	0.7	1	20	774	793	774	795	0.95
6	8	0.0016	0.19	13.1	0.1	2	23	840	861	839	861	0.95
7	8	0.00084	0.099	14.0	0.6	1	23	867	889	867	889	0.98
8	8	0.069	8.2	8.0	0.4	2	21	1049	1068	1048	1069	0.92

Sequence Information

Coding Sequence: ATGTATCGAGTAGATCGAATAAATGATGAATGTACCGCGGGGTTTTCTATCAAACGACAATCGTATCGGCTTCAGGCTGGCGAGGACAGTGAATGGGCGACAACCGAGGAAGTGGTCGGTGGTAGCGACGCGACGGCAAAATGTGAGGTAAAAATTGAACAAAATCAGCAACCGTCGCCGCCGTTGCGACCGGAACCGGAAGAGCCCACACCCGCCAACGACCCGCATCCAACGTTAAGGCTCAATCCGAATTTGGCTACCGACCCGGCAAGATGGTCTCCCGCAGACAAGACGTCTACGCCGCAGCCTCCACCGCCTCCACCGCCGCCACCGTCAGCTACTGGAACAGCCGCTGCAGCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATCGGTGAACCTACTCATAATGTGGTCACAATTACCGCGCCTAGAGCAATTCAAATATTCATTTGCAACCCGTGCGGGATACGATTCAGTTCGCTGAGCACGTTGGACGCCCATCAGACGTACTATTGTTCGCGCAGACACAAAAAAGATTCGGAGTCAGACGACGTCAAGTTGCCAATAGTCGTTGAATCGGACGAAAATGCCCTGGGGAATGACACGGACAGCCGTCCGTCGTCCGTCGAGCCGTTATCCAAGGCGATGAGAACTGGAAAACAGTACAAGTGCCCCCACTGTTCGTACAGTGCCGACAAAAAAGTGAGCTTGAACAGGCACATGCGCATGCATTCCATATCGCCGGTGTCCGTACAATCGCCGCCGTGCCCATCGGACAACGCGGACCCGTCGGTGGTGGACCGGTACTGCCAGAACTGCGACATCCGGTTCTCCAACCTGCGCACGTACCAGGCGCACAAGACGCACTACTGCAACACGCGGCACGTGGTCAAGCCGACCCCGTCCAGCTCGCCGATGCCTAACAACCCGTCGCCCACCGGCGTGGTGCCCACTTACCTGGCGCTGCCCACCAATCCTGTCATCGTAGTTCCTTACACACTCGTACAAAACGCAAGCGTCCTGTCCGCTCTGTCCGCGGACATAGGCCCGTCCCCGCCCACCGACACCGCTTGCATTGTCCTGTCCGACGGCACGCTGCAGCCCATCGCCCAGGCGCTGGTGCCCACCAAGTTTGCCATGATCGCCAACAGTGACAACATACAGAGAGACAACTCTCAGTCTCCGCCAGAAGAACTCTTTTCGCCGCCCAAAAAGGCGGAGTCCATCAGCCCGGAGACGAAGATGAGACCGGCGGCGCAACCATCGTCGCCGCTCGATCTGCGGCTGAAGCGCGTGGCAAAATCGTCACAGGACAACGCCGGCTGCACGGACGGCGAGGAGGAAAAGGAGAACAGGCGGAGCGACGGTAACGTGACGGACGCCGAGGACATAATATGCGCGCCGTCCATCCCGTgcatgatattgccgtcgtcgccgtcatcgtctccaacgtccggtggaggtggcgacagcagtggcggccacaggactccgcaacaccggtccagtgcgcaccaccaccacaaccagcaactgcagcagcaacagcaaatgcagcaccaccagcaactgcagcagcagcaacaacagcaccaccatcgcggccacaaccagctgccgccacagccgccgaccaacggcaTGGTGCAGCACGGCGGCAAGTCCGTTCCGTCGTCGGCCATGTTCGTTGACCGGAACGGCGGAAAGTTCAGCGTGTCCAGCCTGTTGCACGCGTCCGGCGCCCGGCTGCAGGACGGCGTCAAGCAGGAACCGGCCAACAACGGCGAGCCGCCGCACCACGTGATGCACCACTTGCCGGCCGCGCATCACAGGTTCAGCGCGATGCACAAGTCGCTGCAGTCCCCGGCCGCTGTGGCCCCGATGCCATCCGGCATCCAGCCACGCGGCCTCGGCGAACTTCTCAGTCCTGCCGCCGTGTTGCCGTACTTTGCGCCCGACATGACGCTCCGACTGAACCCGAACTCGGCGCAGGATGGCGGCGGCGGTGGCGGAATGCCACCCGCGCACCATCAGTTCTACTTGAAACAGGGCCCGTCCAAGTGCGAGAGCTGCAACATCGTGTTCTGCAAGTACGAGAACTTTCTGGCCCACAAGAAGCACTACTGCGCATCCCGTCCGCCACCGGACGGCGTGGACGGCGAAGCTGACAAGACGAGCCCCGAGGGGTCGCCCGGTCCCAAGCCGCTGACGGTGTCGTCGCCGCAGTCGTCCAAGGACAGCGTCAGCCCCACGCCGGTGCTTAAGCCACCCATGATCCAGTTTATATGTTCCACGTGCGGTGTCAAGTTCTCGTCGTTCGACAACCTCACGACGCACCAGACTTTCTACTGCCCGAACAGGACGCTGCAAGAACCGGGGGCAGACAATAAGGCGGTACTGCCGCCGTCAAAGTGTCCAAAGTGCAAAATGACCGTCGACGGAACACATCACCACCAGTGTCAGCCGGCCAACTGTTGGAAGTGTCCGGTGTGCGGCGCCGTGTGCACTAGCGCGTCGGCCGCTCAGAAACATTTGGACAACCACAACGGCATAAGGGCGTTCGTGTGCACCATCTGCCAGTACAAGGGCAACACGCTCAGGGGTCTCAGAACACATATCCGCATGCACTTCAACAAGCGGATGATTCCGGATCTCATGGAAGAAGATTACGTGACGTGCTTGATCGACGAGAACTCGGCGTCGTCGATGGTCGACGGACGCGCCAAAACGCCGACCACTTTGGATTCCGCGGACAAGCCGTCCACCGTCCTTGTCAAGACTGCCAACGCCGCAGCCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAGCCGCGGCCGCCATCGTCATAGTGGACGACGAGCCAAAGGAACTGGTGGTCGTCAAGCAGGAACCGGTCAACGGCATGGCCGCGCCGCCGACGACGGACGAATCGTCAGCCGGCGGCTACCGTCAGCAGCAGCACGAACTGCCGGCCGCTGCGTCTGACGACCTGCTGCAGCAACAGCACCCGCCTCCGCCGTCGACGCCACAGCTCCAGATGCAGACCGCCGGCGGCAACAAGCGGACCGGCATGACCGCGAAATACTGCAAGGCGTGCGACATATCGTTCAACTATCTGTCCACTTTCATTGCGCACAAAAAATACTACTGCCGGAACAGCACCGAGTACAAGTGCAACACGGAAAACGCCAAGACGGCGACGGTCACTTAG
Protein Sequence: MYRVDRINDECTAGFSIKRQSYRLQAGEDSEWATTEEVVGGSDATAKCEVKIEQNQQPSPPLRPEPEEPTPANDPHPTLRLNPNLATDPARWSPADKTSTPQPPPPPPPPPSATGTAAAAAXXXXXXXXXXXXXXXXXXXXAIGEPTHNVVTITAPRAIQIFICNPCGIRFSSLSTLDAHQTYYCSRRHKKDSESDDVKLPIVVESDENALGNDTDSRPSSVEPLSKAMRTGKQYKCPHCSYSADKKVSLNRHMRMHSISPVSVQSPPCPSDNADPSVVDRYCQNCDIRFSNLRTYQAHKTHYCNTRHVVKPTPSSSPMPNNPSPTGVVPTYLALPTNPVIVVPYTLVQNASVLSALSADIGPSPPTDTACIVLSDGTLQPIAQALVPTKFAMIANSDNIQRDNSQSPPEELFSPPKKAESISPETKMRPAAQPSSPLDLRLKRVAKSSQDNAGCTDGEEEKENRRSDGNVTDAEDIICAPSIPCMILPSSPSSSPTSGGGGDSSGGHRTPQHRSSAHHHHNQQLQQQQQMQHHQQLQQQQQQHHHRGHNQLPPQPPTNGMVQHGGKSVPSSAMFVDRNGGKFSVSSLLHASGARLQDGVKQEPANNGEPPHHVMHHLPAAHHRFSAMHKSLQSPAAVAPMPSGIQPRGLGELLSPAAVLPYFAPDMTLRLNPNSAQDGGGGGGMPPAHHQFYLKQGPSKCESCNIVFCKYENFLAHKKHYCASRPPPDGVDGEADKTSPEGSPGPKPLTVSSPQSSKDSVSPTPVLKPPMIQFICSTCGVKFSSFDNLTTHQTFYCPNRTLQEPGADNKAVLPPSKCPKCKMTVDGTHHHQCQPANCWKCPVCGAVCTSASAAQKHLDNHNGIRAFVCTICQYKGNTLRGLRTHIRMHFNKRMIPDLMEEDYVTCLIDENSASSMVDGRAKTPTTLDSADKPSTVLVKTANAAAAXXXXXXXXXXXXXXXXTAAAAIVIVDDEPKELVVVKQEPVNGMAAPPTTDESSAGGYRQQQHELPAAASDDLLQQQHPPPPSTPQLQMQTAGGNKRTGMTAKYCKACDISFNYLSTFIAHKKYYCRNSTEYKCNTENAKTATVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01168011;
90% Identity: -
80% Identity: -