Basic Information

Insect: Nasonovia ribisnigri
Gene Symbol: -
Assembly: GCA_027563275.1
Location: JANEHQ010002280.1:10108-15920[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00095 0.11 13.8 4.5 1 23 258 280 258 280 0.97

2 9 2.6e-05 0.003 18.7 2.5 1 23 286 308 286 308 0.98

3 9 0.00024 0.028 15.7 0.5 1 23 314 337 314 337 0.97

4 9 0.058 6.9 8.2 3.4 1 21 343 363 343 365 0.95

5 9 0.00072 0.085 14.2 3.0 1 23 430 453 430 453 0.97

6 9 0.11 13 7.4 2.4 2 23 460 481 459 481 0.93

7 9 0.00022 0.026 15.8 0.8 1 23 487 509 487 509 0.99

8 9 0.00038 0.046 15.0 7.0 1 23 515 538 515 538 0.95

9 9 2.4e-06 0.00028 22.0 5.0 1 23 552 574 552 574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00095	0.11	13.8	4.5	1	23	258	280	258	280	0.97
2	9	2.6e-05	0.003	18.7	2.5	1	23	286	308	286	308	0.98
3	9	0.00024	0.028	15.7	0.5	1	23	314	337	314	337	0.97
4	9	0.058	6.9	8.2	3.4	1	21	343	363	343	365	0.95
5	9	0.00072	0.085	14.2	3.0	1	23	430	453	430	453	0.97
6	9	0.11	13	7.4	2.4	2	23	460	481	459	481	0.93
7	9	0.00022	0.026	15.8	0.8	1	23	487	509	487	509	0.99
8	9	0.00038	0.046	15.0	7.0	1	23	515	538	515	538	0.95
9	9	2.4e-06	0.00028	22.0	5.0	1	23	552	574	552	574	0.98

Sequence Information

Coding Sequence: ATGTCTGAAAACGAAGGAACTATTGTATTAGATGGTGGATCATCAGCAAATACCATGACTATTGATGGGACTCACATAAAATTGGAGGCTTCAACCTCTGGCAATGAAAATATTACAGATATACAAAACTACTTGGATTCATTTAATAAAGAAATTGAAGGAAATGAAGTAACACAAGTACAAACTGATGGGGACTCAGTAGAACATGCATATTTCATAGATCAAAATGTACAATATTATTATCAAACAACTACAGGAGATGGCCAGATGGTTATGGTTGGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTTTAGGACTTTCAGAACATGATGCACAAATGATGGCTAACACGAATGAAAACAATATGGACAACGTAACTCAAATTGTTCTACCTAATGTACAGGATAAAATTAAAAAAGATATCCCTCAAATTGTTGCTTTAGGAGATGGTAGTGGGTATCAAACAGTCACTCTCGTTCAAGCTGACGCTGACGCTAACAATTACGTTCTTTATGTAGTCAAACAACAAAATGACAAAAATGATGAAACATCTAACGTTAGTATGGAGATTTCTCAAGAAGACCCTGATCCAGATGATCCCGATGTTAATAATGTTTATGATTTTAATGATGGGGAAGATCCAACTCTACCAAAAAAACAAGAAATAGTGGTAAAAGATGACAAATCTAAAATACTTAAATTAGTACCTAAAAAGTCACAGACCGTAACTCAAGCACATATGTGTAATTATTGTAATTACACTACTGGAAAAAGGTACTTGTTATCTCGTCATATGAAATCTCATTCTAAAGAACGTCCACATAAGTGTACAGTTTGTGAACGTGGTTTCAAAACTCTAACTTCTTTGCAAAATCATGTTAATACTCATACTGGAACAAAACCATATCAATGTCGAAGTTGTCCAAGTGCTTTTACTACATCAGGAGAACTTGTTAGACATGTTAGGTATAAGcatactcatgaaaaaccacataaatgtacaatatgtgattatgctagtgtagaacttagcaaaatgagaaaccatatgagatgtcatactggtgaaaggccatatcaaGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAGTGTCCCCATTGTACTTATGCAAGCCCAGATACATTCaaattgaagcgccatttgcgtatacacactgtttaaaaacacacagactaatacatagtgGTGAAAAACCTGTTTTTAAATGTGACCATTGTCCAGCCACTTGTGGTCGAAAAACTGATTTACGTATTCATGTACAAAAGCTTCACACTTCCGACAAACCTATTAAATGCAAACGATGTGGTGATGCATTCCCTGATCGTTACCAATACAAGGTTCACTGTAAATCACATGAAGGGGAAAAATGTTATAAATGTGAATTGTGTCCTTATGCTTCCATGTCTCAGCGTCATCTTGAAACTCATATGTTAATACATACAGATGAAAAGCCATTCCATTGTAAACTATGTGATCAATCATTCAGACAAAAACAATTACTACGCCGCCATCATAATCTATATCATAATCCAGCATATATACCACCTCCGCCACATGCGAAAACTCATCAGTGTAATACATGCCAACGATCGTTTAGACATAAAGGAAATTTACTAAGACATATGGAAGTTCATATGCAAGAATCCACTGGAAATGATCGAAATACAGCATTAAAACAAAGACTTGAGTATACAGATTCAGCTAATGAGGACGAATCTGAGGAGGACACAAGTATTCCAACAAGTGAAACTGGAGTTGTAGCAGTAGAAGGTGATGATGGACAGCAATATGTTGTACTTGAAGTGATTCAACTTGATGGTCAGGATCAGATAGATAGTTATACGTCTACAAGTGTATCAATACAACAAGTTGACCAATCTTCACCAAGTCAAAAAGACCTTACAATTTTAAAAACAGCGTCTCTGTCAGACGTGAAAGAAGAATGTGGTGATGGCGTTGAAAATTGTTTCGGTTTTGATGACGAAGATGATGAAGAAACAAACTCAGGTGGTTAA
Protein Sequence: MSENEGTIVLDGGSSANTMTIDGTHIKLEASTSGNENITDIQNYLDSFNKEIEGNEVTQVQTDGDSVEHAYFIDQNVQYYYQTTTGDGQMVMVGGXXXXXXXXXXXXXXXXXXLILGLSEHDAQMMANTNENNMDNVTQIVLPNVQDKIKKDIPQIVALGDGSGYQTVTLVQADADANNYVLYVVKQQNDKNDETSNVSMEISQEDPDPDDPDVNNVYDFNDGEDPTLPKKQEIVVKDDKSKILKLVPKKSQTVTQAHMCNYCNYTTGKRYLLSRHMKSHSKERPHKCTVCERGFKTLTSLQNHVNTHTGTKPYQCRSCPSAFTTSGELVRHVRYKHTHEKPHKCTICDYASVELSKMRNHMRCHTGERPYQXXXXXXXXXXXXXXXXXXXLVSPLYLCKPRYIQIEAPFAYTHCLKTHRLIHSGEKPVFKCDHCPATCGRKTDLRIHVQKLHTSDKPIKCKRCGDAFPDRYQYKVHCKSHEGEKCYKCELCPYASMSQRHLETHMLIHTDEKPFHCKLCDQSFRQKQLLRRHHNLYHNPAYIPPPPHAKTHQCNTCQRSFRHKGNLLRHMEVHMQESTGNDRNTALKQRLEYTDSANEDESEEDTSIPTSETGVVAVEGDDGQQYVVLEVIQLDGQDQIDSYTSTSVSIQQVDQSSPSQKDLTILKTASLSDVKEECGDGVENCFGFDDEDDEETNSGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00184818;
90% Identity: -
80% Identity: -