Nrib012699.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010001392.1:26258-32513[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 1.8e+02 3.8 0.3 1 23 103 126 103 126 0.91 2 13 0.018 2.2 9.8 0.0 1 20 131 150 131 152 0.95 3 13 0.00028 0.033 15.5 0.9 1 23 271 293 271 293 0.98 4 13 6.5e-07 7.7e-05 23.8 2.0 1 23 318 340 318 340 0.98 5 13 6.7e-05 0.0079 17.4 0.5 3 23 347 367 345 367 0.96 6 13 0.00028 0.033 15.5 0.9 1 23 418 440 418 440 0.98 7 13 6.5e-07 7.7e-05 23.8 2.0 1 23 465 487 465 487 0.98 8 13 6.7e-05 0.0079 17.4 0.5 3 23 494 514 492 514 0.96 9 13 0.00028 0.033 15.5 0.9 1 23 565 587 565 587 0.98 10 13 0.0088 1 10.8 1.0 1 15 612 626 612 629 0.89 11 13 0.021 2.5 9.6 5.3 1 23 640 663 640 663 0.96 12 13 0.0027 0.32 12.4 0.5 2 23 679 700 678 700 0.97 13 13 0.088 10 7.6 1.7 2 23 707 729 706 729 0.93
Sequence Information
- Coding Sequence
- ATGAATTTTAACGTGTACGTTAAACTTACACAATTAACCCAAGAAGAAATAGAAAAGCATACTCTCAAAAGTCAGAAAATAAAGAATACTTCAAAATCATTAAATGAGAGAAATAATCCTTCTGGATCAATAAAACCGGAACTTCAAGAAAATGCTATTATTCACAACGACAAGCGTGCAACTATGTTGCGATTGTTGAAGCAAAAATTAATACTTGAATTAATAACTAAGCCAAAGAACCAAATTATACCTATAACGGAGGGTACTACATTATTAAACTACACGGACAATGTCAACGAAAATGAATTTATTTGCCAAATATGCAATGATCGTTTTGAGAATTTCAAAGAAACTTTAGTCCATACAATTTCAATACATAGTTGTAAACCATACGTATGTGAAGTTTGCAATGCACAATTTGTTCTTAGTGCACATTTGTATGTACATCAGGCTGGACTTGATAATTCTTTATGCATGATAAAATCATCCGTTAATCATTTAGAAATACAGTCTTCATCCAAAAGTAATTTGTCAATAAATCCAAGTAGAAATTACAAGAGCTCTAAATCAACCTTGAAATTGGCAAAAGAATCCTGCAACACTAACAATGCTAATACTACAGTAAATTTACAACAAAATGATTCCAAAAATTTAGCTCAGAACTTTTGTGTAACTGATCCCAATATAACTTTACAAAACAAAAAAATGAAATCATTGATGGGTGCAAATCGCGTTTTTTCAACAGGGCCTGAAGCAGAATTTCATAATCATCTTGATATTTCTAATAACATTTCAGAGAGTAGTTCAAAGTTCCAATGTAAATTGTGTATTAAATCATACAGAACTCAAGCAGCATTAAATGGTCATATGAAATATCATATTTTTAGACAGGAAAAAATGAAAAATAATGACAATGGAAAATCTCCAAATACCGCAAATGTTGAAAGAAATTATCAGTGTAAAGATTGCAATAAATATTTCACTACACTTGGTAATTTAAATATCCATCAAAAGCAACACAAACCACAAAATATGATATGTAATATATGTCAAAAAAAATTTGTATTGGAGAAAAACCTAGAAAAACACTTACTATCACACTTAAATGGTAAATCTGTTCCCAATATAACTTTACAAAACAAAAAATTAAAATCATTGAAGGGTGCGAATCGCGTTTTTGCAACAGGGTCTGAAGCAGAATTTCATAATCATCTTGATATTTCTAATAACATTTCAGAGAGTAGTTCAAAGTTCCAATGTAAATTGTGTATTAAATCATACAGAACTCAAGCAGCATTAAATGGTCATATGAAATATCATATTTTTAGACAGGAAAAAATGAAAAATAATGACAATGGAAAATCTCCAAATACCGCAAATGTTGAAAGAAATTATCAGTGTAAAGATTGCAATAAATATTTCACTACACTTGGTAATTTAAATATCCATCAAAAGCAACACAAACCACAAAATATGATATGTAATATATGTCAAAAAAAATTTGTATTGGAGAAAAACCTAGAAAAACACTTACTATCACACTTAAATGGTAAATCTGTTCCCAATATAACTTTACAAAACAAAAAATTAAAATCATTGAAGGGTGCGAATCGCGTTTTTGCAACAGGGTCTGAAGCAGAATTTCATAATCATCTTGATATTTCTAATAACATTTCAGAGAGTAGTTCAAAGTTCCAATGTAAATTGTGTATTAAATCATACAGAACTCAAGCAGCATTAAATGGTCATATGAAATATCATATTTTTAGACAGGAAAAAATGAAAAATAATGACAATGGAAAATCTCCAAATACCGCAAATGTTGAAAGAAATTATCAGTGTAAAGATTGCAATAAATATTTCACTACACTTGATGACATACATAAAAATAAGAATATGTTACTGAAGAAAAAATTATTTCGTTGTTCCTATTGCACTATTGATTACAGAACAAGAAAATGCCTGAACAGTCATGAAAGACAGTATCATTCTAGTTCTAAACCCTCTCTTCGGAAGGTAAACTCAACAGTTGTTAAATGCAATTGGTGTAGTAAAGAAATAACAAAAGGTAACTTGCTTCGTCATATTAGAAAACTTCATCCTAACATCAATCCTGTAAAATGTAGTTACTGTCCAATGGCAATTAAGGATAGGAACTCATTGAAATTGCATAATCATAGATTTCATAAAATTTAA
- Protein Sequence
- MNFNVYVKLTQLTQEEIEKHTLKSQKIKNTSKSLNERNNPSGSIKPELQENAIIHNDKRATMLRLLKQKLILELITKPKNQIIPITEGTTLLNYTDNVNENEFICQICNDRFENFKETLVHTISIHSCKPYVCEVCNAQFVLSAHLYVHQAGLDNSLCMIKSSVNHLEIQSSSKSNLSINPSRNYKSSKSTLKLAKESCNTNNANTTVNLQQNDSKNLAQNFCVTDPNITLQNKKMKSLMGANRVFSTGPEAEFHNHLDISNNISESSSKFQCKLCIKSYRTQAALNGHMKYHIFRQEKMKNNDNGKSPNTANVERNYQCKDCNKYFTTLGNLNIHQKQHKPQNMICNICQKKFVLEKNLEKHLLSHLNGKSVPNITLQNKKLKSLKGANRVFATGSEAEFHNHLDISNNISESSSKFQCKLCIKSYRTQAALNGHMKYHIFRQEKMKNNDNGKSPNTANVERNYQCKDCNKYFTTLGNLNIHQKQHKPQNMICNICQKKFVLEKNLEKHLLSHLNGKSVPNITLQNKKLKSLKGANRVFATGSEAEFHNHLDISNNISESSSKFQCKLCIKSYRTQAALNGHMKYHIFRQEKMKNNDNGKSPNTANVERNYQCKDCNKYFTTLDDIHKNKNMLLKKKLFRCSYCTIDYRTRKCLNSHERQYHSSSKPSLRKVNSTVVKCNWCSKEITKGNLLRHIRKLHPNINPVKCSYCPMAIKDRNSLKLHNHRFHKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -