Nrib023649.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010000100.1:368128-375614[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9e-06 0.0011 20.2 5.0 1 23 152 174 152 174 0.97 2 10 1.3e-05 0.0016 19.7 5.1 1 23 180 202 180 202 0.98 3 10 0.00042 0.05 14.9 7.9 1 23 228 250 228 250 0.96 4 10 1.2e-07 1.4e-05 26.1 1.9 1 23 256 278 256 278 0.98 5 10 3.4e-06 0.00041 21.5 6.6 1 23 284 306 284 306 0.98 6 10 0.00035 0.042 15.2 4.2 1 22 312 333 312 336 0.89 7 10 5.4e-06 0.00064 20.9 4.3 1 23 336 358 336 358 0.96 8 10 0.014 1.7 10.1 0.0 1 23 364 386 364 386 0.94 9 10 8.9e-06 0.0011 20.2 0.7 1 23 392 414 392 414 0.98 10 10 0.016 1.9 10.0 4.5 1 23 424 446 424 446 0.98
Sequence Information
- Coding Sequence
- ATGACTGAAGTGCTGAAAGCTAGTGAATTAAGGGTTCCAATGCCACCAGAAAATATGAGCATAAATAGAGATCGAAGCGGAGAACATCATCAAAATATGGATGGTCCACCACAGCCTGCACATGCTCATTTCACACCTCCAACTTCAGTGTCTGATTTAGAATTGCTTCAGCATAGAGTCAATTGGGGTACATTCAGTGATCCCACAAAAGTATGCTCTAGTCTTATGCTTCAACTTGGAGGAGCTGCTGCTGCTGTTGGTTCAGGTCAAGGAGGTTCCTCTGGTAATAATCAGACAAATGGTAATAATGAACGCCGTACACACATCACAGGCTCTAGTCTCATGTTACAACTGGGAGGAGCAGCGGTAGCGACCGCACCGAGTAGCGCATCAGGTGGTACCCAAATATCGGGTTCAAGTGGTGAACGCAGAACCCATATCACTGATTCACCATTTCATTGTGACATATGTGGAAAATATTTCTCCAGAAAAGATCATTTCAAAAATCATGTAATGTGGCATACAGGTGAAACACCACATAGATGTGACTATTGCGCCAAAACATTTACACGCAAAGAACATTTGGTTAATCATGTGAGACAACATACTGGTGGTATACAAAACGCTGCCGAATATTCTATGAACATGGAGCCTGGTCCTTCTACTTATCGTGAAACTCCTCACCACTGCAATTACTGCCCAAAATCGTTCACGCGTAAAGATCACATGGTTTACCACGAGCGTCAACACACAGGGGAAACGCCGTTCCCGTGCCAGTACTGTCCAAAGGCTTTCACTCGCAAGGATCATTTGGTGAACCACGTCAGACGTCATACAGGCGAGTCACCACACAAATGCACTTATTGTTTAAAAGTGTTTACGAGAAAGGAGCATCTGACCAATCACATCCGCCAACATACGGGTGAAACACCTCACCACTGCAATTACTGCTCGAAATCATTCACGCGTAAAGACCACATGGTTTACcacgagcGCGAGTCGCCACACGCTTGCGAATTCTGTAATCGAACCTTTGCACGCAAAGAACATCTGAAACGTCACGTGCGCCAGCACGCGCCGGGGGCAGAGTACAATTGTATCATCTGCTCCGAGGTGTTCTCTGCCAAGGAACCGTTGCTCGAACACATGTTGACCCATCCCCGCGATTGTCCGTACGTGTGCACCGACTGCGGCAAGGCGTTCCGCCTCAAGGGCAACCTCCTGTTCCATCAGAGGTCCCATCAAAAGGGCATGCCGGCCGATCGTCCGTTCCGGTGTGATCTGTGCCCCAAGGATTTCATGTGCAAAGGACACTTAGTGTCGCACCGGCGCAGTCACACCAATACTAAACAACAATTTCAGTCTGGACAATTTACAAAAGACCACGGCACCAATGCTTCGTTCATGTTGAAACACTTGATGAAGCAAGAGAACGTGTCGGAAATGATCGGCCTGCATCAGCCCCATCCAATGCCCCAGCACTCTGTCAGTGTGGGCACACAAGTTGGACTGCCTGTTCTTCCTCCGCCTCCAAACCTCCATCTTCCCCCGCCAACCGCCGCTAGCCTATTAGCCGCAGTCACGTAA
- Protein Sequence
- MTEVLKASELRVPMPPENMSINRDRSGEHHQNMDGPPQPAHAHFTPPTSVSDLELLQHRVNWGTFSDPTKVCSSLMLQLGGAAAAVGSGQGGSSGNNQTNGNNERRTHITGSSLMLQLGGAAVATAPSSASGGTQISGSSGERRTHITDSPFHCDICGKYFSRKDHFKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGGIQNAAEYSMNMEPGPSTYRETPHHCNYCPKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCLKVFTRKEHLTNHIRQHTGETPHHCNYCSKSFTRKDHMVYHERESPHACEFCNRTFARKEHLKRHVRQHAPGAEYNCIICSEVFSAKEPLLEHMLTHPRDCPYVCTDCGKAFRLKGNLLFHQRSHQKGMPADRPFRCDLCPKDFMCKGHLVSHRRSHTNTKQQFQSGQFTKDHGTNASFMLKHLMKQENVSEMIGLHQPHPMPQHSVSVGTQVGLPVLPPPPNLHLPPPTAASLLAAVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033207;
- 90% Identity
- iTF_01032374;
- 80% Identity
- -