Nrib020045.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010000002.1:808093-813756[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.8e-05 0.0033 18.6 1.1 1 23 107 129 107 129 0.96 2 22 0.0046 0.55 11.6 4.8 2 23 139 160 138 161 0.95 3 22 0.0016 0.19 13.1 3.4 1 23 216 238 216 238 0.99 4 22 0.99 1.2e+02 4.3 3.4 1 20 270 289 270 291 0.90 5 22 0.032 3.8 9.0 0.1 2 20 313 331 312 333 0.93 6 22 0.0027 0.32 12.4 2.7 1 23 338 360 338 360 0.97 7 22 0.31 37 5.9 1.4 1 23 815 837 811 837 0.88 8 22 0.005 0.6 11.5 3.1 1 23 906 928 906 928 0.95 9 22 0.082 9.7 7.7 2.7 1 23 934 956 934 956 0.96 10 22 0.016 1.9 10.0 6.6 3 23 1012 1033 1011 1033 0.97 11 22 0.00019 0.023 16.0 2.6 3 23 1094 1114 1092 1114 0.97 12 22 0.0029 0.34 12.3 2.7 1 23 1119 1141 1119 1141 0.99 13 22 3.5e-05 0.0041 18.3 0.4 2 23 1196 1217 1195 1217 0.96 14 22 0.047 5.5 8.5 1.1 1 23 1223 1245 1223 1245 0.96 15 22 0.0053 0.63 11.5 1.0 2 21 1276 1295 1275 1296 0.94 16 22 0.0096 1.1 10.6 2.6 1 23 1326 1349 1326 1349 0.96 17 22 0.00013 0.016 16.5 0.1 2 23 1393 1415 1392 1415 0.95 18 22 0.0001 0.012 16.9 4.7 2 23 1423 1445 1422 1445 0.97 19 22 0.0026 0.31 12.4 0.9 1 23 1477 1499 1477 1499 0.97 20 22 0.00059 0.07 14.5 0.3 1 23 1504 1527 1504 1527 0.95 21 22 0.00056 0.067 14.5 0.5 2 23 1559 1580 1558 1580 0.97 22 22 0.00012 0.015 16.6 1.4 1 22 1586 1607 1586 1607 0.96
Sequence Information
- Coding Sequence
- ATGACTTCAATGAAAGACTACATAAAAGTTGAAGTCACAGGTGATGCTGATGCTGTTACCAGTGAATTATATGTGGAAAACACTGTTGAAAATTCTGCATGGTACATAGTTGAAGATAATCATGTTTCTTTGGTATCTGAAAATGTGGAGAAAGTTATTAAGCTGGAAACTGATATGTTGGATGATTGTATGTGGGAAAGTAGAATCGAAATTACCAAAGATGTTACCAACCAAAGTAATATGGAGTTACCCTTGGAATGTCAGGATGTTGCAGATAATAATATTTACGTAAATCATGGAAATACAAGTGATAAAATATTTCATTGTAATATTTGTGGAAAAAGCTTTGTTTTAAACTATCTTTTAAAAAATCACTTGGCCGAACACAAAAGACAAGTAAATTGTAAAACTAATAAATGTAAATTTTGTAATGAACAGTTTAAGTTAAAATTTGGTTTGAATAGACACATTCAAAAACATCACAATTCCATGTATAAATGCAGATTTTGCAAACTTTTTATTGATTGCTCTAAGTATAATGAACACAAAAAATGCCATGAAAGAAGAGATCAAACTAAGTTTGATACTATCCCTAATATAAAATTATGCAAATTAAACGGTGTTTGGAAAAGTAAAACACATGAATTTAAATGTAACATTTGTTTTCAAAAATGTTATAATGAAAAGAATTTGGTCGAACATATGGAAACTCATGACAATTGTCAAATACAGTGTCAAGATTGCTTAGATTATGTTTCAGTTTCTGATTTGAATAATCATATGGAAAATGTACATAACAAACATTTATTTAAATGTCAGAAATGTAACCAACAGTTTCAAAAACAACAACAATTAAATTGTCATTTAATTAATTGCTTAAGAAGTTCTCATACCAAATCAAATAAAGTTTGTGATAAAATCAAGGCTAATGAAAAAACTTGCTCTGCTTGTGGAATTGTTTTTAATAATTCTTTATCCTTGAAAAATCATACAACTATTGGTTGTAAGCATTACACTTGTAAATATTGTGGACAATTTTTTAGTAAAAGGAATTTTTGGCTAAAACATACCGATGTTCACAAAAAAAATGAACAATGTGCAATGTTTAAAGGGAGTGATAAAACATCTACAATAAGAGAATATAATCAAACTGAAGTTGTAAATGATTCTTCAAGTACAGATGAAAGACAACTCTTATCCAGAGATGTTACGGGAAGAAATAGTTTAGATCATACCAGATTAGTGAACAGCAATTCAACAATTGTATCGACTGCTCCACACACCTATATCCCGAACAATGACATTATTTCAAATCCTAGACAAACTGAAATCTTATCAAATACCTTGGGAAGAAACAGCTCAGATCAAATAAGTTTAGTAAACAGCAATTCAAAAATTATATCAACTATAACTCCGTACAATGATAATCTTCCAGTCTTATTGAATACCTTGGAAAGAAATAGTTCAAACCAAATAGAAGACCAGCTAGATACGAAGAATTTATATCCAGCGACGGTTTCATTAGACGTAGTTCACAATGGAATTATGAATATGAAGCAGGAACAATTTTTTCATACCACAGTTATAGACCCTTCTCAGCGCGAAATAAACATTCAACAATCAAATGAATTGAGACAACAATCAAGTATATTGATTGCTCCTCATAATTCAATAGCAAACAACAATAGCCCTGTTTTAAGTATTAAGCAAGAAACAAATATTTCAGACCAAAGTAATTTAGGAAACGGCAATGAATTAATTGTATCAACTGCTTCACAAAATTCAATGGCAAACTCAAATAGCAATACACCGATTGTGTCGACTGAACACATCTCTATCCGGAACAATGACATTAAATCCAGTCCAGGGCAAACTGAAATCTTATCCAATACCTTGGAAACATATAGTTCAACCCAAATAGAATACCAACTAGTGGGGAGCGATCTCGTTCCAGAGCCGGTTCCATTACACATAGTTCAAGACATAATTATGAATATCAAGAAAGAACCATTACTTCATTCAACAGACCATTTTCAACCCATATGGGAAGCTCCTCATAATTCAAATGCAAACAACAATAGCTCTGTTCTAAATATACAGCAAGAAAAAAACTTGTGTACAAATGTCAGAGAAAGGAACTCTTCAGATCAAGTGGATTCACTGAGTAGCAATGAATCAACTTTGACAACCGGGTCTCGTGATTTAATGGCAGAACAAACCCCTATTAATATAGTTAATAATAATACTGTATCTATAGTTAGAGAAACACCTTATTTCTGTATTAGAAAATTGCCTAATATTAAAAATGTATTTTTCAATGATGATAATGATCAGACATCTCAAAACAATGTTATATTTATATGTAGAATTTGTAAAAATTCTCCATCTACTGATATACATTCATTTGCATTACACATGAGTGATCACAGTGAGTGTAATATGCATGAATGTATTGTGTGTGAGAAAACATTTAACTCTGTAGTTCTTTGGACAGACCATATGACCTATCATCAAAAGCAAATAGATTTAAATGTGTCAACAATTCAGTTGAATCCTATAGAAACTGAATCTAATGCATTTGAATCTATTAATTCTAGAAACATGGAACCTCAAGGTTGTACAAACCTAAGAAATAAAAAATTAAAGATATCTTTATTGAATGATTCACATTCAGATATAACGACGTTAAATAGTGCAGATAAAATTAAATACCAATATGACTGTAGTACATGTAAAAAAGTATTTCCTTCCAAAAGTGCATTAAAATGTCATCAAACTCTTCACATTAAATCACAACCATTTGCCTGTAGGTATTGTGATAGAATATTTTCTGGGAAGGGTCAATGTACAAATCATGAAAAATCTCACAACAACTCAGACAATTCGTTATTACAAAATAATGAGAATATTAAACTTGAACCAATTGTAAACGAAAACAGCATAAGTATAATAGATAACAACACTAATTCTGAGACAATGTCAAGAAAACAAACTAAAAAAAACGAATCATTATCAATTAAAAAAACAAATTTCTGTAATTTATGTAATAGAAAATTTACAAAGCGCTGTTATTTTACAAATCATATGATGATGAAGCATAATATAAATACAAATACACCCAAACAACTTTCATCGATTGATAGTAACGAATCAATCATTGTGACTGAAAACACAGAGTTGTCTAATGAATATGATAACAAATTATCAGTTCCAGAAATTAACAAAAATAACAATCTGAACAACCATGTTAAAAAAAGCAATGAAAAGAAATCAACATTTTGCCAAATTTGCAACACACACTTTGCACATCTTGGTGCTTTAACCAATCATATGCGTGTTCATGGTTATAAGACATACAAATGTCAATATTGCTACATGCAGTTTAATAGGAAAGGCCTTTATATTATGCATGAAAAAACACATGTATTAAAAAATTCAGTTAAAAATACTGCCAGTCAAAACAAAAACAATAAAATTGTTGAAGTTAATGAAGAACCACAGATTGAGCATTATAATGGTTTTGATACTATTCATAGTCCAGTTGATGACAATTCAAGTGGTACAGACATAGAACATTTATGGTTACCTTGTGATGTATGTGAAAAAAAATTCTCTACTCCATTCCAATTGAATGTTCACCGAAAGTTACATCCTGATATTGTACCATATGTATGTAAAATTTGTAATAGAACTTATCAGTTAAAATTTCGATGGAATTGGCATTTAAAAGGCCACTACAATAAACACAATGCAAGTTTAAAAAGTAAACAGCATACTAATAATCTAAAACCGAACATTACTAAACTTATGGTTAAAGATAAAATGAAATGTCGATATTGCAAAAAAGAATATAATTCGATATCTCAATGGAAAAAACATATGACAATGAGCAAGGAATGTCGTCGTCATTGTAAAAGTAACCTTCCAGAGTTTTCATCAAATAAAACTACAAAGAATTCCATCAAATCTGGTCGATTCAGATGTAATATATGTATGAAAACATATAGTACCTCTTATAATCGAACAGTACATAAAAAAAATGTTCATAATGTGTTGGATACAACGTATTTGAATATTAAAGATAATAACGGTTTACAAAAAGACAAATCAATGGACATAGTTCAACAAAAACCAGTGATTAAGAAACGAAATAAACGTAATCACATTAATAGCACTAAATGTGAGTTATGTGGTAAAATATATAGTAATGGAGCTAATTTAAGTCGCCACATATCCATAATCCACACACAAACTTATGAACCTATGACCTGTAATGTTTGTGGAAGGACATTTAAACACAAATTTTCTTACAGAGAACATTTAAAAACTAAACACAAACAGTTATTTAAACATTATGAAGAAACAAACTCTACATATAAAACAACTAGCCGTCAAATTATACCAGTAAATAAAACAAATACTATGAAATACTTTTGTAAAGTATGTAAAATGAAGTTTGCTGACAATATTACATTACAAGAACATTCAAAGATACATACTTTAAATATGTATAAGTGTAAAGACTGTGGTCAGCAGTTTGAGACAAATCTTACTCTAGGTAATCATATTTTGGAAAACCACAGTGCTGATATTTCTACATCTAATAAAAAGGAACATGTAGAGAATTATGAGAGACAAAATGCTTCCCTAGAAATAATTAATTATAATTTTACTCAGTGTGAAATTTGTTTGAAAATCTTAAAAACCCCTAAATAtttaagattgcacatgagattacacactggtgtcaaaccattcaaatgtgataagtgtAACATGGCTTTCAGATTTAAACCAAACTTAAAAGTGCATCAGAAGAAAAATTTGGCATGTCATATCCCATAG
- Protein Sequence
- MTSMKDYIKVEVTGDADAVTSELYVENTVENSAWYIVEDNHVSLVSENVEKVIKLETDMLDDCMWESRIEITKDVTNQSNMELPLECQDVADNNIYVNHGNTSDKIFHCNICGKSFVLNYLLKNHLAEHKRQVNCKTNKCKFCNEQFKLKFGLNRHIQKHHNSMYKCRFCKLFIDCSKYNEHKKCHERRDQTKFDTIPNIKLCKLNGVWKSKTHEFKCNICFQKCYNEKNLVEHMETHDNCQIQCQDCLDYVSVSDLNNHMENVHNKHLFKCQKCNQQFQKQQQLNCHLINCLRSSHTKSNKVCDKIKANEKTCSACGIVFNNSLSLKNHTTIGCKHYTCKYCGQFFSKRNFWLKHTDVHKKNEQCAMFKGSDKTSTIREYNQTEVVNDSSSTDERQLLSRDVTGRNSLDHTRLVNSNSTIVSTAPHTYIPNNDIISNPRQTEILSNTLGRNSSDQISLVNSNSKIISTITPYNDNLPVLLNTLERNSSNQIEDQLDTKNLYPATVSLDVVHNGIMNMKQEQFFHTTVIDPSQREINIQQSNELRQQSSILIAPHNSIANNNSPVLSIKQETNISDQSNLGNGNELIVSTASQNSMANSNSNTPIVSTEHISIRNNDIKSSPGQTEILSNTLETYSSTQIEYQLVGSDLVPEPVPLHIVQDIIMNIKKEPLLHSTDHFQPIWEAPHNSNANNNSSVLNIQQEKNLCTNVRERNSSDQVDSLSSNESTLTTGSRDLMAEQTPINIVNNNTVSIVRETPYFCIRKLPNIKNVFFNDDNDQTSQNNVIFICRICKNSPSTDIHSFALHMSDHSECNMHECIVCEKTFNSVVLWTDHMTYHQKQIDLNVSTIQLNPIETESNAFESINSRNMEPQGCTNLRNKKLKISLLNDSHSDITTLNSADKIKYQYDCSTCKKVFPSKSALKCHQTLHIKSQPFACRYCDRIFSGKGQCTNHEKSHNNSDNSLLQNNENIKLEPIVNENSISIIDNNTNSETMSRKQTKKNESLSIKKTNFCNLCNRKFTKRCYFTNHMMMKHNINTNTPKQLSSIDSNESIIVTENTELSNEYDNKLSVPEINKNNNLNNHVKKSNEKKSTFCQICNTHFAHLGALTNHMRVHGYKTYKCQYCYMQFNRKGLYIMHEKTHVLKNSVKNTASQNKNNKIVEVNEEPQIEHYNGFDTIHSPVDDNSSGTDIEHLWLPCDVCEKKFSTPFQLNVHRKLHPDIVPYVCKICNRTYQLKFRWNWHLKGHYNKHNASLKSKQHTNNLKPNITKLMVKDKMKCRYCKKEYNSISQWKKHMTMSKECRRHCKSNLPEFSSNKTTKNSIKSGRFRCNICMKTYSTSYNRTVHKKNVHNVLDTTYLNIKDNNGLQKDKSMDIVQQKPVIKKRNKRNHINSTKCELCGKIYSNGANLSRHISIIHTQTYEPMTCNVCGRTFKHKFSYREHLKTKHKQLFKHYEETNSTYKTTSRQIIPVNKTNTMKYFCKVCKMKFADNITLQEHSKIHTLNMYKCKDCGQQFETNLTLGNHILENHSADISTSNKKEHVENYERQNASLEIINYNFTQCEICLKILKTPKYLRLHMRLHTGVKPFKCDKCNMAFRFKPNLKVHQKKNLACHIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -