Nrib008692.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010000310.1:181186-186705[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0078 0.92 10.9 0.1 1 23 321 343 321 343 0.96 2 13 0.00012 0.015 16.6 1.0 1 23 351 373 351 373 0.98 3 13 0.00026 0.031 15.6 1.8 1 23 380 402 380 402 0.97 4 13 1.2e-06 0.00014 22.9 1.3 1 23 408 430 408 430 0.98 5 13 0.0056 0.67 11.4 1.3 1 23 437 459 437 459 0.96 6 13 0.078 9.2 7.8 1.0 1 19 465 483 465 485 0.90 7 13 0.87 1e+02 4.5 0.0 7 23 520 536 520 536 0.94 8 13 5.7e-05 0.0068 17.6 0.1 1 23 542 564 542 564 0.97 9 13 9e-07 0.00011 23.3 1.2 1 23 570 593 570 593 0.96 10 13 2.2e-06 0.00026 22.1 0.9 1 23 599 622 599 622 0.96 11 13 3.4e-05 0.0041 18.3 1.4 1 23 628 650 628 650 0.98 12 13 0.00011 0.013 16.8 0.4 1 23 656 678 656 678 0.94 13 13 0.0054 0.64 11.4 0.1 1 21 684 704 684 708 0.92
Sequence Information
- Coding Sequence
- ATGGCAACTGATCTAGAACATGAAAGGTCTTCAACAACGGCATCAAATACATGCTTAATTTGTGATGGTAGCACAGGAGTGTCAGCTCGAAATGCCATCTCTATATTTCAGCACCGTGTGTCATCTTCAGATCGTACTGTAGTTAAGGTAATTAATGGTGTCCTTGGTGTAATACTCTCTTCAGAAGATGTACATTCCATTGTTGTGTGCCGTCGATGTTTTAAATCTTTGAATGAAGTGGATGAACTTGAAGATCGGTTAGCTGACGTTAAATTAGAGCTTACCTCTCAATATCAACGTACACTGAAGAGTAAATCTGAAGGTTTAGATATACATACTATAGACACAATTGATACTGAACTTGAAGTTGATACACCAAAACCAGTTAAAAAACGAGGACGGCGTCCCAAGATTAAAGAAGAATCTATTGATATGCCTAATTCTAACGAAGACATTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAAGACATTGAAAAACAGCAAAAGTGTTCATCAGTAGATAATTTAATTGAGATGTTAGAAGATGATTGTAAGGATAATTTAGTTTCATTGAATATTGAAGAAGAGTGCTCTCAAAAATTGATCCAACCTGCGGATATCAAACAGGAATCTATTATACATCCTGACATGGAAAATATTGATGAAGATGATGATTTAGATGGCAGTGCAATACTTGATGAAGAGGATTCAGATTATGAAGGAATTGAAGATTCCAAAAATGATGATGCTGAGTCTAGTAGTCCAAAAAAACCAAAAATGACTAAAAGTTCCCTAAAGAAAAAAACTCCTGAAATTCTCATACCGCAAATGTTGGTTCATCATGATGGAGATGTTTACACTTGCCTACTGTGTAGTGTAGATAATAAATTTACAGCCGATTCTAGAGGTATTGTGATTCATGCCAAAAATGTCCATCAGATTAAGTTATTTATTTGTGATATATGTGGGCAAGAGTTCCTAAAAAGACCTGAACTGATGAAACATCTAGAACAACATGCAAATAGTGAAGATGGTAACTATGTTTGTGACATTTGCAGCCGAGTTTTTACCAATGTGCGTATGTTCAGGGTACATAAAAAAATGCATATGCCACAATCTAAAAATCATACTTGCGAAACTTGTGGTCGACAATTTGCGTCTCGGAACACATTAGAAGAACACAATAATacacatacaggcgtgcgtccatatcgttgtgaaatttgtggtaaagattttacttccaagtatacatttaaagctcatgaaaaggtacataccaatcgtgagcgaaactttacttgtattaattgtggtaaagcttttcttactgagcaaaatctgatacatcatgagcgaacacattcaggacttaaaaattatgtatgccaaaaatgtggtaagTGTACAATTAAGTATATATTtttgATTGTTCATAAATTATGCTTTATTGATAAATTATTACAATGCACTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAggtaaagcgtttggcactgcacgcaatttagaagtgcattatgtggtacacacaggttataaaccatttatttgtcgtatgtgtggcaaagcatttgctaggaaagctgagattagggatcatgagcgtattcacactggagaaaaaccataccagtgtgaattctgtggagctacattcagTCAAAGAAGTAACTTGCAATCTCATAAGCGAGCTacccactatgatgataagcgttataaatgtacggattgtggtaaaggttttaagaggcgtcgcttattagactaccatatgaaggctgcacacactggagaaagaccattcaaatgcgatgtctgccaagcatcatttatttacccagaacattttaaaaaacatgcacgtattcatacaggagaaaaaccttatttatgcgaAgtttgtggtaaagcattcaacagtagagataacagaaatgctcatcgttttgtacatagcgacaaaaagccctacgaatgtttagtgtgtggtgctggatttatgcgtaaaccattactttacaatcatatgactcaagcaggtcatttgaatgataCTATTGTTGTAAATCAACCTCGGCTAGCTTCTAGTCCTGTAACCATACAAGAAATTCAAGAAGACATTCAAATGCCAGTTACAGATACTGAAATGGAATTGGCCATGGTGGTTGATTCTGAAGGAAACCAAACAGAATTGCGTGACATGACTGAAGAAGAAAGAAAATTGTTTGCTGGAGAATTAAAAGAGCACATACTTTTACCAAGCAAACAAGAAGACCTAGGAAATGATTTAAATTCCGTTGAGCAAATACTTGTTGATAATAAATATCAAATCCAATACACAACGACTGACCAACATGGTGATGTTCATACGATGTTGAACATGGATCATCATGGGGATGACGGGGATGTGGATGTTGGGCACATGGAGACTGTTACTGTCAGTGTTGGTGGTCAAGAACATCGTCAATTGATAGTGCCAGCCACTCGTCATATTACATTGAATGAAAGTGATGCTGCAGCATTTGCTGAACATGCTACTATAAATGGTGAAAATGTGCAAATAGTACAAATACAAATACAAGACGATGATGGAGAAGACCAGAAACATTGGTTCAACATTATTCAACCACAGCAAGGATAA
- Protein Sequence
- MATDLEHERSSTTASNTCLICDGSTGVSARNAISIFQHRVSSSDRTVVKVINGVLGVILSSEDVHSIVVCRRCFKSLNEVDELEDRLADVKLELTSQYQRTLKSKSEGLDIHTIDTIDTELEVDTPKPVKKRGRRPKIKEESIDMPNSNEDILXXXXXXXXXXXIKDIEKQQKCSSVDNLIEMLEDDCKDNLVSLNIEEECSQKLIQPADIKQESIIHPDMENIDEDDDLDGSAILDEEDSDYEGIEDSKNDDAESSSPKKPKMTKSSLKKKTPEILIPQMLVHHDGDVYTCLLCSVDNKFTADSRGIVIHAKNVHQIKLFICDICGQEFLKRPELMKHLEQHANSEDGNYVCDICSRVFTNVRMFRVHKKMHMPQSKNHTCETCGRQFASRNTLEEHNNTHTGVRPYRCEICGKDFTSKYTFKAHEKVHTNRERNFTCINCGKAFLTEQNLIHHERTHSGLKNYVCQKCGKCTIKYIFLIVHKLCFIDKLLQCTXXXXXXXXXXXXXXXXXXXXXXXXGKAFGTARNLEVHYVVHTGYKPFICRMCGKAFARKAEIRDHERIHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCTDCGKGFKRRRLLDYHMKAAHTGERPFKCDVCQASFIYPEHFKKHARIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYNHMTQAGHLNDTIVVNQPRLASSPVTIQEIQEDIQMPVTDTEMELAMVVDSEGNQTELRDMTEEERKLFAGELKEHILLPSKQEDLGNDLNSVEQILVDNKYQIQYTTTDQHGDVHTMLNMDHHGDDGDVDVGHMETVTVSVGGQEHRQLIVPATRHITLNESDAAAFAEHATINGENVQIVQIQIQDDDGEDQKHWFNIIQPQQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01329191;
- 90% Identity
- iTF_00942076;
- 80% Identity
- -