Nrib021179.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010001910.1:22804-25417[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0036 0.43 12.0 2.3 1 23 143 165 143 165 0.93 2 17 1.8 2.2e+02 3.5 0.8 1 21 322 342 322 344 0.92 3 17 0.00025 0.029 15.6 3.9 1 23 406 428 406 428 0.99 4 17 3.2e-05 0.0038 18.4 2.7 1 23 434 456 434 456 0.98 5 17 0.065 7.8 8.0 3.5 1 23 462 484 462 484 0.98 6 17 2.5e-05 0.003 18.8 1.3 1 23 494 516 494 516 0.96 7 17 2.7e-05 0.0032 18.7 1.1 1 23 522 544 522 544 0.98 8 17 0.031 3.7 9.0 6.0 1 23 550 572 550 572 0.97 9 17 0.00019 0.023 16.0 1.1 1 23 578 600 578 600 0.99 10 17 1.9e-05 0.0023 19.1 3.0 1 23 606 628 606 628 0.98 11 17 0.00062 0.074 14.4 4.8 1 23 635 657 635 657 0.98 12 17 3.3e-05 0.004 18.4 6.0 1 23 663 685 663 685 0.98 13 17 0.00071 0.084 14.2 0.2 1 23 691 714 691 714 0.98 14 17 9e-06 0.0011 20.2 1.5 1 23 714 736 714 736 0.98 15 17 2.6e-06 0.0003 21.9 0.5 1 23 744 766 744 766 0.98 16 17 0.00063 0.075 14.4 0.2 1 23 772 794 772 794 0.98 17 17 1.5e-05 0.0017 19.5 0.5 1 23 800 823 800 823 0.95
Sequence Information
- Coding Sequence
- atggagaaacatatagatatacaaaataaaaATATTTTAATTGAGACAGATTACAATCAACAATTAGTAAATCATGATTTTTGTATTAAAAATGAGATGGAAGACAACAATGAATGTATACAAGAAGAAATTACTGATTTTGGATACAATGTTGACAAACATAAATACGACAACAGTAATTTTTGGATTGTTAATAAAGAAACAAATAGTATAAATGAATTAGATACAACTATTAAAATTGAAAGAGATGTAACGGTATTTAACAATCATGTGTTTAAAAGCGAAATGGAAATTGTAATTCCAAGACATGTAAATGAAAAAAATAAAAATTCCCAAATAACAGAAAAAGAGGTTCATGTTGTCCAGCCAAAAAAAAATAATCTTCATCTAACTGTTGGTGAACTAATACACAATTGTCAAAAGGAATACCAGTGTAAAATATGTAATAAGCGTTTTCATGACAAATACATTTTAGAAGATCACGAATCCCTTCATGCAAATATCAAGAAATTCAAGTGTATTAGTTGCGGTGAGCAGTTTCTTGAATTAAATGGTTTTAAAAGCCATTTGATATCTCATATAGACGATAATATAAAATTGCTTGAAAATCAATTTCTTCAAGAGTGTAATGGTGTTAGTGAATGTAACAGTAATTTATGTAATAACATTACTAAGCTTGACGAATTGAAGACAAGTCATTTTGAAGCAAGAGTTCCAATTCAAAAGAGAACAACCAACAAAGTTACGTTAGAGTTTTCAGTAGAAATTGAACAAACAAATACTGAAAATATTTTATTAACCAAAGTTTGTAAAATAAATTCAAAAAAATGTGGTGATTCATATTTAACTGTTGGAACTGAAACAGTTAACTCTTGTGCTCCAGTACATCGTGAACATGTTAATTTGGATGAATTGAACATTGCACGTTCAGTTGGTCAAAAAGAATATAAAAATTATGAAGTATATAAATGCGCAAAATGCAGTACATTGTTTCATGATCGTCCAAGTATTATAGATCATCTAAAACCTCATACAGATCAATGTATCAACTGTTGCAAGTACATTGGTAGTCCGACTTCTTGTAAATATCCCGTTAGCCCCGATCCAGGAACACCATTTTATTTTGAATGTGATGAATGTTACAATGGATATTATACACTCAAGAGCTTTGAAAAATATCAAAGTGCGCCAAGTGATAAAAAAAAATACAGGccatacaaatgtgatatttgtctaaaaacatatatacatttatatcactttgctgctcatcaacgattacataagggtgagagaccataccagtgtaatatttgtaataaacgttttcacgccaactttaattTAGAAGCTCACATGTTTTCGCATCAAAATATCAAGAGATATAAATGTTTTTTGTGTTTAAAAAAGTTTCTTAAATTAACTTATCTCAAAACCCATATGTTGTCTCATGACTCTTACATACGTACAGATAACATACataaatgcgacatgtgtggcaaagaatttggttcattgaattctttgcagagacatcaggatcttcactccggatacaaaccatacaaatgtattgaatgcggcaagtcattttcaatgaataaatctcttgcacaacatttaaaaaggcatgatggtttaaaaccataccaatgtaatctctgtaatgaaagttttagcacttattttgattttaagtgtcataaaagattacataaaggtgaaaagccttataagtgtgatatttgtggagatcagtttactcaattaactgcttggaaaagacacaaaaaaacacattatgaacataaaaattttgaatgcaacgagtgccataaaaagtttgctagtaaaactagtgtcaaaattcatttgcaaacacacttagaaaaaattaaaaaacataaatgtaaagtttgtaacaaaattttctcaaaatatggtcatttgtatgaacatgaaaaaattcataaagactttaaaccatatgtttgtaacatatgtaaaaagagttttatttctcgtcataattatactcatcacttaaatcaacacacaggtgccagaccttatgtgtgtgatttatgtgggaaaacgtatcCGGCAATTGTATCTCTATATAGGCACAAAAAAACAAATCATACATGTGATATTTGTAATAAATTCTACAGTGATCCAAAAGAACTCAAGGTCCATAGGACTACACACGAAGAATCTAAAATGaggcagtatgcatgcaccttgtgtgacaaagcatttaaaaatcaaccagctttgaacaaacataaattaactcatctagtcgaaagaccgttcaagtgtgacctttgtcccaagtcttatataaatattactgctctgggaattcatagaagaaatcatactggtgaaaggccatacaaatgcaatctatgtaataagACATATCCCCAAATTAGTTCACTAACTCGACACAAAGCCATTGTACATACATCCAATAAGTAA
- Protein Sequence
- MEKHIDIQNKNILIETDYNQQLVNHDFCIKNEMEDNNECIQEEITDFGYNVDKHKYDNSNFWIVNKETNSINELDTTIKIERDVTVFNNHVFKSEMEIVIPRHVNEKNKNSQITEKEVHVVQPKKNNLHLTVGELIHNCQKEYQCKICNKRFHDKYILEDHESLHANIKKFKCISCGEQFLELNGFKSHLISHIDDNIKLLENQFLQECNGVSECNSNLCNNITKLDELKTSHFEARVPIQKRTTNKVTLEFSVEIEQTNTENILLTKVCKINSKKCGDSYLTVGTETVNSCAPVHREHVNLDELNIARSVGQKEYKNYEVYKCAKCSTLFHDRPSIIDHLKPHTDQCINCCKYIGSPTSCKYPVSPDPGTPFYFECDECYNGYYTLKSFEKYQSAPSDKKKYRPYKCDICLKTYIHLYHFAAHQRLHKGERPYQCNICNKRFHANFNLEAHMFSHQNIKRYKCFLCLKKFLKLTYLKTHMLSHDSYIRTDNIHKCDMCGKEFGSLNSLQRHQDLHSGYKPYKCIECGKSFSMNKSLAQHLKRHDGLKPYQCNLCNESFSTYFDFKCHKRLHKGEKPYKCDICGDQFTQLTAWKRHKKTHYEHKNFECNECHKKFASKTSVKIHLQTHLEKIKKHKCKVCNKIFSKYGHLYEHEKIHKDFKPYVCNICKKSFISRHNYTHHLNQHTGARPYVCDLCGKTYPAIVSLYRHKKTNHTCDICNKFYSDPKELKVHRTTHEESKMRQYACTLCDKAFKNQPALNKHKLTHLVERPFKCDLCPKSYINITALGIHRRNHTGERPYKCNLCNKTYPQISSLTRHKAIVHTSNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -