Nrib029121.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nasonovia ribisnigri
Gene Symbol
-
Assembly
GCA_027563275.1
Location
JANEHQ010000734.1:59298-65556[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 7.9e-08 9.4e-06 26.6 2.4 1 23 184 206 184 206 0.97
2 17 0.028 3.4 9.2 2.8 2 23 213 235 212 235 0.94
3 17 0.056 6.6 8.2 1.7 1 19 241 259 241 263 0.91
4 17 0.0011 0.13 13.7 2.7 1 23 269 292 269 292 0.95
5 17 5.4e-07 6.4e-05 24.0 2.8 1 23 298 320 298 320 0.99
6 17 1.2e-05 0.0014 19.8 7.1 2 23 327 348 326 348 0.97
7 17 3.7e-06 0.00044 21.4 0.6 1 23 354 376 354 376 0.98
8 17 0.00012 0.015 16.6 0.3 1 23 382 404 382 404 0.98
9 17 3.5e-06 0.00041 21.5 0.5 1 23 410 432 410 432 0.99
10 17 0.00065 0.077 14.3 1.8 1 23 438 460 438 460 0.99
11 17 0.00014 0.017 16.4 2.4 1 23 466 488 466 488 0.99
12 17 1.9e-06 0.00022 22.3 1.6 1 23 494 516 494 516 0.99
13 17 3.5e-07 4.1e-05 24.6 0.2 1 23 522 544 522 544 0.99
14 17 3.1 3.7e+02 2.8 6.9 1 23 551 573 551 573 0.98
15 17 5.7e-05 0.0068 17.6 1.9 1 23 579 601 579 601 0.99
16 17 0.038 4.5 8.8 2.0 2 23 609 631 608 631 0.94
17 17 0.079 9.4 7.8 1.3 1 23 636 658 636 658 0.96

Sequence Information

Coding Sequence
ATGATGGAACATTTAAATGCAAAAAACAATGATGTTCTTAAATTCAATAAAATATTAAAAGTATCACTTGAAAGATGCGATCATCTATTGAAATTTCAGAACAAACAAATAATTAAAGAAGAAATTTTTGAATTTAAAgactttgatatcacaattgtagaagatgattttctCCAAAGAATTAAACAAGAAGAAAATGATGTTGAGAATATTGCAATTTCTACAACAAAACAAAAAAATATTCATAAAATAATTGAAAATGGAACAATTCAAACAAATTCATTTAATTCTAAAGAAATTGTCAAGACTACTAATTTTGATGATGGAGTTGACTGTGTAGATGATAATATTATGGTGCATAGTAGCAATATTGAAATTGAGCCTGAAAGATTAAAATTATCTTCTCCAGAAAGAAGAGATTTTATCAAACACAAGAAATCACATGAAAAAAACCATGAGAATACGGATAAACCTAAAAAATCACAAACAACATTCTCTGAAGAATTACACTTGACTGAGCATAACAAGACGCTTGACAAAAAAATAACTTTCGATTGCAAATACtgcaataagacgtttaaagtcaaatcaaatttaatggttcatataagaaggcacactggagaaaaaccattaatgtgtgatttgtgtaaaagatcttttgctcggagacaaaatatgatgtgtcatattatgagaacacattcaggatataaacctcattcatgtggaatttgtaaaattaaatttgcccataagacatcattagacgaccatgaatggacacacactggtattaaaccatttaagtgtgaaatttgtgtaagagaattttctcggaaatcaagtttaatttttcaccaaaaacacattcacactggtgaaaaactttttaaatgtaacgtttgtgacaaagctttttacagaaaaacatttttgaagaatcatatgaaagtccataatactgtgcaatttcaaaagtgtcatatttgtgataaaacatattctcataaatcaagtttacacagacatttattgatccattctggtgaaaagatgtttgaatgcgatatgtgtaagagatccttttatcggaaaccaagtttacttgcccatataaaaattcatatgacaaagagaccttatgaatgcaacctctgcagatcaacatttcctactgcatcagaattacaaagccatacaatatctcacaccggtgataaaccatttcaatgccaactttgtgacgcaagttttattttacaatcacttttaaatactcacatgagatctcattctggagatagaccatatcagtgcccttattgtttagcaacatacgttcaaaagaaaagttattcttaccatttaaaaactcacaaagatcatgaattgtataaatgtagtttgtgtaaaatgtcattttttcaaaaaaataagctaattgatcatttaagattacatactggtgagaaaccttttaaatgcctcgtgtgtaaccaaagatttgtgcaaaagtctgtgttacagtcacatatgagaactcacagtattgaaaaaaaatataaatgtgacatttgtggagtagtcttggaacaaaaatcaaatttaattaaacacataaaaacccatcttgccttcaaatcaaattttaggtgtagattttgtaagattacatttttacaaaaatcaacttttatgtgtcatatgaagatgcattctaagaaaaacccttataaatgcaatatatgtggtaCTTCTTATTTACAAAAATCTGACATGAAAAAACATGAAAAAACTCATATGATTGAAAAGGGTTTACTGATTTGTAAAAAATGTAATCAATCTTTTCCTACAAAACTAAAACGTGTAAATCACGAAAGAAAATTTCACACCGATGAAGCATTTCAATGTATTATCTGTTTTAAATTGTTTTTTGAAAAAAAGGAATTAACTCTACATATTAAATTGCACATGAAAAATATGTCATCTGAATGTTTGAAATGCAAAGAACCGTTGCTACGAGCACCTGTTTCGGCTAAATTATTAAGAGCTATAACTGGAAATAAAAAAAATTTATGTGACGTTTGTTATGTCATCTTCTAA
Protein Sequence
MMEHLNAKNNDVLKFNKILKVSLERCDHLLKFQNKQIIKEEIFEFKDFDITIVEDDFLQRIKQEENDVENIAISTTKQKNIHKIIENGTIQTNSFNSKEIVKTTNFDDGVDCVDDNIMVHSSNIEIEPERLKLSSPERRDFIKHKKSHEKNHENTDKPKKSQTTFSEELHLTEHNKTLDKKITFDCKYCNKTFKVKSNLMVHIRRHTGEKPLMCDLCKRSFARRQNMMCHIMRTHSGYKPHSCGICKIKFAHKTSLDDHEWTHTGIKPFKCEICVREFSRKSSLIFHQKHIHTGEKLFKCNVCDKAFYRKTFLKNHMKVHNTVQFQKCHICDKTYSHKSSLHRHLLIHSGEKMFECDMCKRSFYRKPSLLAHIKIHMTKRPYECNLCRSTFPTASELQSHTISHTGDKPFQCQLCDASFILQSLLNTHMRSHSGDRPYQCPYCLATYVQKKSYSYHLKTHKDHELYKCSLCKMSFFQKNKLIDHLRLHTGEKPFKCLVCNQRFVQKSVLQSHMRTHSIEKKYKCDICGVVLEQKSNLIKHIKTHLAFKSNFRCRFCKITFLQKSTFMCHMKMHSKKNPYKCNICGTSYLQKSDMKKHEKTHMIEKGLLICKKCNQSFPTKLKRVNHERKFHTDEAFQCIICFKLFFEKKELTLHIKLHMKNMSSECLKCKEPLLRAPVSAKLLRAITGNKKNLCDVCYVIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-