Nrib003017.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010000207.1:299897-301600[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 5e-05 23.8 0.1 7 39 3 36 1 42 0.76 2 2 0.016 7.3 7.2 0.0 3 34 54 85 52 91 0.81
Sequence Information
- Coding Sequence
- ATGCCAGAGGCCTTATTGGCCCTAAAAGCCGGGTACTACTCGGTATCCCAAGCTGCCCGGTACTTTAACATTCCTGAAACAACCTTGAGACAGTACGTTTCAAATCAAAATATCGCCGTTAAACCTGCGAAACGTGGTTACGTAAAAACCGGGGACAATAAAGCACTCCAGGACGCTATAGTCCTTGTTACGAAACAAGGGGTTTCCGTGAACGCGGCCAGCCGCATCACAAAAGTGGCTCGGACCACTCTGAGGGTGGCTCTTAATAATCTGGATGACAAGGTTGAGGTAAATCGCAAGGTACCCAATAAAAAAAACAAATATACCGTGGATGCGAGGTTGACGAAAGGTTCACCACCCGGAAAAGTGGAAAAGGGAAAAATAACAATTCCCATCAGCATCGACCTTACAAAGTTGGGTGGCAAATTTAAAATTAAGCCGCCATCCAAGACCGTGTTCAAAAACAAAATAGTCATGGGGAAAAACTCGGTCAACAGTCACGTAAAATTCGAGGATTCCTCCGACGAGGAACCGAAAGTTGGTTTGGACGACGGCGACAAGGAGACACTGGTTGTGGATAAAATTTTCACGCCAACACCCTCTCCGCAGAAATCAACAAACAATCCAACCGCTGACGTCTACGATTTTGTCGATGACGAACTACAAGAAACCCCAAAACCGTATGCTCAAAGAGACACGTCTCCAGTGGCCGGACCATCGGGATGCCAATACCAAGTTAAGTTTAAACGGCACGGTTCTGGCGATGATGGTATTGTATTTTTTTGGTTTCGTAACGATATTTTTTCGTCGTTTTCACGTCCGTACGCTTTTTTTACAGTACTGGTCGTCGTATCAGATGAACGTATCCCGCTGGGAAGCCCCCTGCGTTTGTCCGAGGCGGACAACGACGACGATGGTATTGTATTTTTTTGGTTTCGTAACGATATTTTTTCGTCGTTTTCACGTCCGTACGCTTCTTTTACAGTATTGATCGTCAAATCCGATGAACGTCAACGGCGGGGAAGCCCCCTAAAATGGTCTGAGGCGGACGACGACGATGGTATTGTATTTTTTTGGTTTCGTAACGATATTTTTTCGTCGTTTTCACGTCCGTACGCTTCTTTTACAGCATTGATCGTCAAATCCGATGAACGTCAACAGCGGGGAAGCCCCCTACAATGGTCTGAGGTGGAAGACGACGATGAACTTGTTGGGCGTTCACGGAAACGTCGCCGGGATGTCTCTGACCGGGACTCCTGTACTATTAGTCAACGGCTTACCAAATACTGTCCTTTATGCGAGTTTAGGAAAAAAAAGCAAGTGAATAAAAAGCAAaggaaaaaaaagcaagtaaaaaaaagcaagtga
- Protein Sequence
- MPEALLALKAGYYSVSQAARYFNIPETTLRQYVSNQNIAVKPAKRGYVKTGDNKALQDAIVLVTKQGVSVNAASRITKVARTTLRVALNNLDDKVEVNRKVPNKKNKYTVDARLTKGSPPGKVEKGKITIPISIDLTKLGGKFKIKPPSKTVFKNKIVMGKNSVNSHVKFEDSSDEEPKVGLDDGDKETLVVDKIFTPTPSPQKSTNNPTADVYDFVDDELQETPKPYAQRDTSPVAGPSGCQYQVKFKRHGSGDDGIVFFWFRNDIFSSFSRPYAFFTVLVVVSDERIPLGSPLRLSEADNDDDGIVFFWFRNDIFSSFSRPYASFTVLIVKSDERQRRGSPLKWSEADDDDGIVFFWFRNDIFSSFSRPYASFTALIVKSDERQQRGSPLQWSEVEDDDELVGRSRKRRRDVSDRDSCTISQRLTKYCPLCEFRKKKQVNKKQRKKKQVKKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -