Nrib010017.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010001698.1:18001-18506[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-08 4.9e-06 27.0 0.0 5 40 6 42 4 47 0.80 2 2 0.003 1.4 9.6 0.0 3 34 59 90 57 96 0.81
Sequence Information
- Coding Sequence
- ATGTCATTGAACAATATGCCAGAGGCCTTATTGGCCCTAAAAGCCGGGTACTACTCGGTATCCCAAGCTGCCCGGTACTTTAACATTCCTGAAACAACCTTGAGACAGTACGTTTCAAATCAAAATATCGCCGTTAAACCTGCGAAACGTGGTTACGTAAAAACCGGGGACAATAAAGCACTCCAGGACGCTATAGTCCTTGTTACGAAACAAGGGGTTTCCGTGAACGCGGCCAGCCGCATCACAAAAGTGGCTCGGACCACTCTGAGGGTGGCTCTTAATAATCTGGATGACAAGGTTGAGGTAAATCGCAAGGTACCCAATAAAAAAAAACAAATATACCGTGGATGCGAGGTTGACGAAAGGTTCGCCACCCGGAAAAGTGGAAAAGGGAAAAATAACAATTCCCATCAGCATCGACCTTACAAAGTTGGGTGGCAAATTTAA
- Protein Sequence
- MSLNNMPEALLALKAGYYSVSQAARYFNIPETTLRQYVSNQNIAVKPAKRGYVKTGDNKALQDAIVLVTKQGVSVNAASRITKVARTTLRVALNNLDDKVEVNRKVPNKKKQIYRGCEVDERFATRKSGKGKNNNSHQHRPYKVGWQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -