Nrib001352.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nasonovia ribisnigri
Gene Symbol
Mblk-1
Assembly
GCA_027563275.1
Location
JANEHQ010002012.1:5028-16071[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.9e-16 1.3e-13 51.2 0.0 1 39 330 369 330 373 0.95
2 2 8.4e-18 3.9e-15 56.1 0.0 1 43 919 962 919 964 0.95

Sequence Information

Coding Sequence
ATGGGAAGAAGAAAATGGCACCAGTATCAAGACATTTTGGCGAAAAATTATTTACTGGAAGAGGAATTGATGGACCGGAGAGAATGGGTTCCCGTCAAAACGTGTAATTCGTGTGATGTGAACACAGACCTGAGCATAGCGGATCACTCACCTGCAGAACTGGAGCCATCGTCTGAAACGGGAAGCTTGAGCGGCGGCAGTCGCAGCGCAGAGAGTCCGGAACCGGAACCGGGCAGGCGGTCGTCTTCCACACCGCCCCCGGCGGCATCAGAGCCGTGTCGCGCCGATGACCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGCCGCGGTCGCGTCTCTGAACAACTCGTCGTCGTCATCGTCCACGGCGACGATGACACCGGCGGGCGGGCCACCATCGCCCAGCGCGCTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCAGCTGCAGGTCGCCACCCGCCCACCTTCAGCACCAACAACAACACCAGTCGCTCGATCAACCGCTCGATCTCAGCGCNNNNNNNNNNNNNNNNNNNNNNGTCAGTGGTCCGGGCGGCAACACTTCATCGTCGCCCGCGTCGTCCACGCCGTCGTGCCTGAGCTTGCCGTCCACGCCGTCGTTGTCAGAGCTGAAAAACGCGCCAGCCACCGTCGCTGCCGCCGTTGCCATCAACCCGTTCACGTCAGATCTCATCAACACGGACATGGTTAACCAGCTGCGCGACCTGTTACCGGGTACGTCCACGTTCCTACCGCACCAACCGCTCAATGTGCCCCTGCTCACCACCAACAACCGGAACATGTTCAAATCGAAGCCGGTGAAACAGCCCAGTCACATGGCCGGCCGAAAGACTTACACGGAGGACGAGTTGCAAAAGGCGCTTCGGGACATCCAGAGTGGCAAATTGGGCACGAGACGTGCGGCCGTCATATACGGCATACCTAGGTCGACGTTGCGGAACAAGGTGTACAAGTTGGCGCATGAACGGGACAGCAATGGTGGCGGCGGCATAGGAGTTGGCGTCATCAGGGATACATCGACGGGCGGAGACGACCCGTCCAATGGTCCGGCCACTGAACTGCTGCCGTTGCTAAACGAAGATGACGATGATGAGGACAGGGACACAGCGTCCGTGGGCGAAGACGAGTGCACAAGCCGAGCTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGACAGAGTCACCATACATGACCGTCGAAGACTTGTTGCGGATCACGGCGGAACAACAGCAGCAGGCGGCCGCGGCCATACCCAACGCCGAGACGCTCCGACTGTTCCTGCAACATTACGCCAACAACAAACTGCTGCAGAACAGGCCGGAACCGCATTACCGTGCCCGAGACGTATCTATGACGGACGGCCGATCGCCGTCACCCACATCCACCTCCGCCGCTCCCAGGTTTTCACTGCCCATGACAGCGGACCTATGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGACCCGCAACACATGGGAACCTATCTATCGCAGTTGCTGTCTTCGTCGGTGGCGGTAGCATCGTCACCTTCAGCTGGACTAGGATCGCCACGCTTGTTGCCGTCACATGACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGTCTGCGGCCCACCACCAGCATGAATTCCTAAAAGATTACACCGTCAAGGACTTGATGCGCAAAATACTGGACGAAGagcaattgcagcagatgcagcacttgcagcaTCAGTACACCAACAAGTTGGCGGACCCGAGACGGTGGTCGTCGAACGGCTGCAGTTCATCTGAACCGATGGACACAGGCCGAAGCAACGACGATGACTCGAACCCGTCCAACGTCATCCTGAGAATACCATCGTACAAGCCGGTTCCCGGTGGCAAGGGTAGCGATTACGAGTTGGTGTCGTGCGCCAGGGACATCCGGTCCCCGGGGCGGGCCAACAGCGTGAGGAGTGACACGTCGTCACCTCCGTCGTCATCCGGAGGTGGTGTGGGTGGCAAACATCCGGTCACCCTGAGAGACGCGATCGCCAAGAGCATCACACACAGGTTCCAGTCGGCGCCCGATCAGCAGATCCCACCACCCATACAAGCAGTCGAGTCGTTTGCCCGTGCCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCATACCCACCTCGTTCGGTACTGGCAACCCAGTCATCAGGAACCACAACAACAACAATCTGCAGCAGGACGACTGCCGGAAACGGGTACCGACGCCCACCAACAAAACATCGTCAGTCATAACGCCATCGTCCACCGTCTCTGGGTTCCACACCGGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGGCACCAGGCCCAAGCGGGGCAAGTACCGAAACTACGACCGGGATAGCCTGGTAGAAGCCGTGCGAGCGGTGCAACGGGGTGAGATGAGCGTGCACCGGGCTGGTTCTTATTACGGCGTACCGCATTCTACGCTCGAGTACAAGGTCAAGGAGAGACATCTGATGCGACCCAGGAAACGCGAGCCCAAGAATCCTCCGGCCTCGTCCTCCGTGTCCGCATCGGTTACCGCCGAACATCACCCGGACCGAAAAAAGTCGTCCGACCTGTCATCTTCGTCGTCGGTCGTCCGGCCAGCCGACAAGACGACTACCACCTCGTCGTCCTCGTCGTCGGCAACACCGCCGGCTATCAAACTTCCCGCTCACGTACAGTTCCCGGCGCAACAACAACCGTCGCCGCTACAGACGCCCAACGGGCTCAAGATGTTCGACGCCGCGGGTCCGGTGGGCCCGTACCAACCATCGTTCCCGTTCTGGGCCCCGAGCCCGTTTCACGTGCCCATGGATTTCCAGCGGAATCCAGTTGGATTCGCACCAATGTCGATGATGCAACGGATCCAGGCCGAGTCACGGCTACACCAACACCAGGCCGCGGCCGCTGCTGCCGCGTCCATCGCCAGCCTAGGCAAGAACGCTCGCGAGGTGGCCGAAAACCTGTACGACGGAACGGATAATGGTAGCTTCCTGGACGGCATCATCAGGTCCAGCTTGGAGACGGGGCTGAAGTCGGCGGCTGCCATGGCGGCCGTCCAGGCGGCGGCCAAGAGCGCCTCGAAGGGAGGGGGTGGAGAGGTCAGCGGTGGCGACGACGACTGCAGTCGGGACGGTTCGCCGCGAGTAGCCGGTGCCGAAAACGACGGTGATCACCACATGGAAGACCTACCGGCCACGCCACCGTCATGCCAGGACTCGGCCGCGGACAGCGATGATGAGAAGCCGCGGACTGAGTCACCGGACGGACAGGAACGTCGTCATCAGCAGCACGACGATTCCGAACACGAAACAAACGCTGATCGGGCGTCCACCGCTTCGCCCGAACACGCGACAGAAACTGAAAACGACGACGATGACAACGACGCGGTCGTCTGA
Protein Sequence
MGRRKWHQYQDILAKNYLLEEELMDRREWVPVKTCNSCDVNTDLSIADHSPAELEPSSETGSLSGGSRSAESPEPEPGRRSSSTPPPAASEPCRADDRXXXXXXXXXXXXXXXXXXXXMAAVASLNNSSSSSSTATMTPAGGPPSPSALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSCRSPPAHLQHQQQHQSLDQPLDLSAXXXXXXXVSGPGGNTSSSPASSTPSCLSLPSTPSLSELKNAPATVAAAVAINPFTSDLINTDMVNQLRDLLPGTSTFLPHQPLNVPLLTTNNRNMFKSKPVKQPSHMAGRKTYTEDELQKALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAHERDSNGGGGIGVGVIRDTSTGGDDPSNGPATELLPLLNEDDDDEDRDTASVGEDECTSRATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTESPYMTVEDLLRITAEQQQQAAAAIPNAETLRLFLQHYANNKLLQNRPEPHYRARDVSMTDGRSPSPTSTSAAPRFSLPMTADLWXXXXXXXXXXXXLDPQHMGTYLSQLLSSSVAVASSPSAGLGSPRLLPSHDSXXXXXXXXXXXXXXXXXMSAAHHQHEFLKDYTVKDLMRKILDEEQLQQMQHLQHQYTNKLADPRRWSSNGCSSSEPMDTGRSNDDDSNPSNVILRIPSYKPVPGGKGSDYELVSCARDIRSPGRANSVRSDTSSPPSSSGGGVGGKHPVTLRDAIAKSITHRFQSAPDQQIPPPIQAVESFARAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIPTSFGTGNPVIRNHNNNNLQQDDCRKRVPTPTNKTSSVITPSSTVSGFHTGGXXXXXXXXXXXXXXXXXXXXXXXXXXKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKNPPASSSVSASVTAEHHPDRKKSSDLSSSSSVVRPADKTTTTSSSSSSATPPAIKLPAHVQFPAQQQPSPLQTPNGLKMFDAAGPVGPYQPSFPFWAPSPFHVPMDFQRNPVGFAPMSMMQRIQAESRLHQHQAAAAAAASIASLGKNAREVAENLYDGTDNGSFLDGIIRSSLETGLKSAAAMAAVQAAAKSASKGGGGEVSGGDDDCSRDGSPRVAGAENDGDHHMEDLPATPPSCQDSAADSDDEKPRTESPDGQERRHQQHDDSEHETNADRASTASPEHATETENDDDDNDAVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-