Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.8e-11 8.4e-09 35.9 0.0 2 38 43 80 42 85 0.89

2 4 1.6e-11 7.3e-09 36.1 0.1 2 39 97 134 96 137 0.94

3 4 2.6e-16 1.2e-13 51.4 0.0 3 45 153 196 151 196 0.97

4 4 7.5e-17 3.5e-14 53.1 0.1 1 43 203 246 203 248 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.8e-11	8.4e-09	35.9	0.0	2	38	43	80	42	85	0.89
2	4	1.6e-11	7.3e-09	36.1	0.1	2	39	97	134	96	137	0.94
3	4	2.6e-16	1.2e-13	51.4	0.0	3	45	153	196	151	196	0.97
4	4	7.5e-17	3.5e-14	53.1	0.1	1	43	203	246	203	248	0.96

Coding Sequence: ATGATGATAACACCTGAACTTTTGGGATTACTACCAAATTCTTCTAATACAGGAGATGTCAGTGAAGATAGTTCTAGTAACAATATTAACAAACAGTACGGTACAAATAGTGGCAAAGGATGGACAGCTGATGATATGGAAAACGCCTTAGAAGCATTACGTTCACATAATATGTCTTTGACCAAAGCATCCATAACATTTGGGATTCCTTCCACCACATTGTGGCAGCGGGCTCATCGCGCCGGTATAGATACTCCTAAAAAAGACGGACCAGCTAAATCTTGGAATGATGAAGCCTTAAACATTGCTTTAGATGCTCTGCGTACTGGCACTATTTCGGCAAATAAAGCTAGTAAAGCTTATGGCATACCTAGTAGTACATTATACAAGATTGCGCGGCGGGAAGGAATTAGATTAGCTGCTCCATTCAATGCAGCACCAACTTCTTGGGGTCAGGAGCAGTTAGACCAGGCATTGCATGCTATACGAACTGGGCAAACAACTGTGCAACGAGCTGCAGCCGACTATGGTATACCTTCTGGTACATTATATGGCCGGTGTAAACGTGAGAAAATTGAATTGTCCCGCAGCAATCCAACCCCATGGTCCGAGGACGCTATGATGGAAGCTTTGGAATCTGTGCGATTAGGTCATATGAGTATTAATCAGGCAGCTATACATTATAATCTACCATATTCTTCATTATACGGGCGTTTCAAAAGGGTGAAATATGGAGCTGGACATCCTGATGATGATTGTGACGATATGATTGATTCAGATACACAGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGGCTACACCAGTGTCTCAAATAATGTTGGTTCAATATCCAGCGCCACAGATTCAAATGTACCAACAACATCCAACTCATTCAACCACTAGTTGA
Protein Sequence: MMITPELLGLLPNSSNTGDVSEDSSSNNINKQYGTNSGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLDQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQSXXXXXXXXXXXXXXXXXXVQATPVSQIMLVQYPAPQIQMYQQHPTHSTTS

Sequence clustering based on sequence similarity using MMseqs2