Nvit006279.1
Basic Information
- Insect
- Nasonia vitripennis
- Gene Symbol
- -
- Assembly
- GCA_009193385.2
- Location
- NC:23637927-23640170[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5 4.2e+02 1.2 1.7 1 9 144 152 144 155 0.87 2 11 1.8 1.5e+02 2.7 0.2 1 21 173 193 173 194 0.89 3 11 3.2 2.7e+02 1.9 0.1 3 10 239 246 238 248 0.84 4 11 0.071 6 7.1 6.7 1 23 259 282 259 282 0.97 5 11 6.1 5.1e+02 1.0 0.8 2 12 302 312 301 314 0.83 6 11 0.02 1.7 8.8 0.3 1 20 332 351 332 352 0.95 7 11 6.6e-05 0.0055 16.6 2.9 1 23 361 384 361 384 0.97 8 11 0.043 3.6 7.7 2.7 2 21 388 407 387 408 0.92 9 11 0.0037 0.31 11.1 5.6 1 23 414 437 414 437 0.97 10 11 1e-05 0.00087 19.1 0.3 1 21 441 461 441 462 0.95 11 11 0.029 2.5 8.3 0.2 1 23 470 493 470 493 0.94
Sequence Information
- Coding Sequence
- atgtttgtaatggttacagataaaaatttcaatttcatcaGTGTTCAAATGTTCAAAGAGGAACTCGATATCAGCGACTGTGAGACCAGCTATATTGATGTATGCGATGATGATAAAATAGTACTTGCCCCTACTAGGAAATCGTCTGTCATTGACGAGGCATCGTCCGATTCAGACGATGATTCGGTTATCAACGTATGCGATTCTGATGCAGAGCTTTCCCGCAGCGAGAGTGaagttaatataaataaatcatcaGTAAATGCGACATCGACTACAAATTCACGTATTGATACTTCTATGGTACGATCCACAGATACGACGACAAAGTCCATGCATTCTGATAATAAAgAAAATTTGCTGCTTGAAGCCAACAGTAAAACGAGAAAGAAGAGGCgaagagaattttCAACGAAAAACCTGTATGCATATTATTGTGAAACGTGCGACAAATTCATCAAGAAAATCAATGGAAGAAAGATAACTAACTGCAGCATTTGCAGAGACGTTTTAGTTTATCGCTGCTTGAACTGCCAAAATGAATACAGAAGTTATGGTGGGGTGTATATGCACTTGAAAGAAAACAAttgctttggcgtaaaaaACGAAGTCACAGAAAACTTTTCTAATACTGCAAATTCGTCGtCAAAATTCAGCAGTTGTTCAAAACAAATAGAACCTAGCACATCCAAGTCGATTGATAACGAGCGACTCTGTCCAAAATGCGGAGAAACTGTCGTCAATGGATGTGGGCCTTGCGACGGCGAGCATCTCTTCCAGTGCTTCGTCTGTGTCTTCAGAAGCTGTCACAAGAGCACATTGATGCACCACATCGATACTGTGCACAGCGACTCAAAGCTGATCCCGCAGTCACAGATGACTCTAGTAGGAAAAGTCCTTCTGCACTGTAACGTCTGCGATCACACGGTATCAGACTGCGAAGTGAAGTACAATCGGAGGCTCAACTGCAAGCTCTGTAACTCTCCAATGCACTACGTCTGCTTGATCTGCAAGAAACAATACGTCAGCGCCAATTCGGTGTACAAACATCTGTACTTCGAGTGCAACGTCCAGCCGAAGTTCCAATGCCACAAGTGTGACTACAGAGCGAAACAGAAGGGCAACCTTCTGACCCACATCGAGAGGAAGCACACCGCCAAAAGGTGTCGAGGTTGCGGCAAGATGTTCGACAACTACATCAGCTGCAGGAAACATCAGATGAAGAAGTGTAAAGTCACCTACAAGTGCCGATACTGCAAGTACACCTGCAAGTTCATTACTCAGTTGAAGAATCACGTGAGACTTGAGCACAAGTCGAGGTACAAGTGCAGAAATTGTGGAAAGAAGTACAAAAATCTGTCTGCCTTGCAGGTGCACGTGAACGATACCTGCGGTCAGGTGACAACTTTCGAGTGCGATATTTGCGGTTATTATACGCTGCAGAAAGGACGCTTAGCTCAGCACATAAAACAAGTTCACAATTTTTAG
- Protein Sequence
- MFVMVTDKNFNFISVQMFKEELDISDCETSYIDVCDDDKIVLAPTRKSSVIDEASSDSDDDSVINVCDSDAELSRSESEVNINKSSVNATSTTNSRIDTSMVRSTDTTTKSMHSDNKENLLLEANSKTRKKRRREFSTKNLYAYYCETCDKFIKKINGRKITNCSICRDVLVYRCLNCQNEYRSYGGVYMHLKENNCFGVKNEVTENFSNTANSSSKFSSCSKQIEPSTSKSIDNERLCPKCGETVVNGCGPCDGEHLFQCFVCVFRSCHKSTLMHHIDTVHSDSKLIPQSQMTLVGKVLLHCNVCDHTVSDCEVKYNRRLNCKLCNSPMHYVCLICKKQYVSANSVYKHLYFECNVQPKFQCHKCDYRAKQKGNLLTHIERKHTAKRCRGCGKMFDNYISCRKHQMKKCKVTYKCRYCKYTCKFITQLKNHVRLEHKSRYKCRNCGKKYKNLSALQVHVNDTCGQVTTFECDICGYYTLQKGRLAQHIKQVHNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487341;
- 90% Identity
- iTF_01487341; iTF_01035835; iTF_01036660;
- 80% Identity
- -