Basic Information

Insect: Nasonia vitripennis
Gene Symbol: Prdm15
Assembly: GCA_009193385.2
Location: NC:15555760-15559127[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6e-06 0.00014 21.7 2.6 1 23 327 349 327 349 0.99

2 12 1.5e-05 0.0013 18.6 2.6 1 23 353 375 353 375 0.98

3 12 0.00025 0.021 14.8 3.6 1 23 380 402 380 402 0.96

4 12 2.2e-05 0.0019 18.1 2.2 1 23 454 476 454 476 0.97

5 12 0.0005 0.042 13.8 1.3 1 23 481 503 481 503 0.97

6 12 0.00015 0.013 15.5 1.5 1 23 553 575 553 575 0.98

7 12 0.00026 0.022 14.7 1.8 2 23 583 604 583 604 0.97

8 12 6.7e-07 5.6e-05 22.9 2.1 1 23 615 637 615 637 0.96

9 12 8.3e-05 0.007 16.3 2.0 1 23 643 665 643 665 0.98

10 12 0.00011 0.0091 15.9 0.7 1 23 671 693 671 693 0.98

11 12 3.2e-06 0.00027 20.7 2.0 1 23 699 721 699 721 0.96

12 12 5.7e-05 0.0048 16.8 0.3 1 22 727 748 727 748 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6e-06	0.00014	21.7	2.6	1	23	327	349	327	349	0.99
2	12	1.5e-05	0.0013	18.6	2.6	1	23	353	375	353	375	0.98
3	12	0.00025	0.021	14.8	3.6	1	23	380	402	380	402	0.96
4	12	2.2e-05	0.0019	18.1	2.2	1	23	454	476	454	476	0.97
5	12	0.0005	0.042	13.8	1.3	1	23	481	503	481	503	0.97
6	12	0.00015	0.013	15.5	1.5	1	23	553	575	553	575	0.98
7	12	0.00026	0.022	14.7	1.8	2	23	583	604	583	604	0.97
8	12	6.7e-07	5.6e-05	22.9	2.1	1	23	615	637	615	637	0.96
9	12	8.3e-05	0.007	16.3	2.0	1	23	643	665	643	665	0.98
10	12	0.00011	0.0091	15.9	0.7	1	23	671	693	671	693	0.98
11	12	3.2e-06	0.00027	20.7	2.0	1	23	699	721	699	721	0.96
12	12	5.7e-05	0.0048	16.8	0.3	1	22	727	748	727	748	0.96

Sequence Information

Coding Sequence: ATGGCAATAAACAATGGTTATTTCGTCATGCCAATGAACATGGACAGGGTCTGCCGCATCTGTTTGCAAGAGAATACAAATTTATCACCCATTTTTTGCAATGGACACGAGATAGGAAGCAATCTTACGGATATATCGCAGAAAATACAAGTGTGTGGTGCTGTGGAGTGTCACGAGCAGGATGGTTTACCTGCCCTCATCTGTGATGTTTGTATATATAAGGCAAGCGTTGCACACGAATTCAGGCAATTATGTCAGCATTCTGATGCTCGATTAAGGCTTTATTATAATAAGCCTGCTAGATTTAATGCTACCGACTCTGGTACACAAACTGATCTAGAAGTGCAGGAACTTTTAACCAAAACTGCTGAGGAGATACAAAATGATTATTTTGTAAAGCAAGAAGTAATGACTAATCAACAGTTTCacaatgcaatatcaaatgaaGAGTACAATCCTGAGCCTCAGACCAATACTGTTGTTACAACGATCGAGTCGGCTTTGCCTACGGTCGACGTAAACATGTCAGTAGAGAGTGACAAACTTTTTAATTGTCATTTAGCTTTTGAAGAGCAGcctaaaaatattgataaagcTCCAGAAGTTGTTGCCTGTGATACCCAAACCGTGGAGTGTACACAAGAATTAATTCCAGTTTCTACAAATTTAATTGATAATGTTTGTACCATAGAAGCAGACATGAGTACTGCAGAAGAGAGTGATGTGAAAAACGACGTCAGCTATTTTACCTACATCACAAAGGAGGAGGAAAATATCGAGGAAAATATCGAGGAAAATATTGAGGAAAATATCGCGAAAAATATCGCGGAAAATATCGAGCAAGGGGAGAATACTGTGCAGAAACGTACATCGGCAAGGAAGACCAAGGCTATACCAAGAACTGATCTGTACGAAGAAATGGAAgatgataattatttcgaGCCAGTGAGCGAGAGTCAGAATTCGGAAGAAACGACGTTTAAATGCGAGTCCTGCTCCAAACGGTTTACCACCCCGAAAGGCTTGAAGAAACACCAATTAACTCACGAAAAACAGTACAAATGTGAAGTTTGTGCAAAAACGTTTTGTAAGTTAGAGAATCTAGAGAAACACAAAAACATTCACACGACGAAGCCACACGCCTGTCAAGTGTGTCACGCGAGTTTCTCGAAATCCCAGAGTCTCGTAAAGCACCTCAAGTCGCACACCGAGAAAGTCAACGACGTCGCTAAGCAGATTAGCACAGACGAGCAGACGCCAGCAGAAATAGAGCCGAAGAAGAGTCCGAAGAGCGAAGAGTCGGACGACGACAGTGGGACTGTCAACGAGCCAGACGGATTTGAAAACGCCCCGGAGATTTTTAAATGTGAGGAGTGCGGTCAGTATTGTTCAACGCTGAAAAATCTAAAACGGCATGCTCTTATACACGGGGAGAGGAAGTACTCCTGTACAGTCTGTAAAAAGTGGTTCTTCCGACCTGACACCCTGAAGAAACACGCGGAGAGGCACGGTCACGGTCTGCTAGATAACTTGGCAGACGACAACAAGCTGTACGActccgacgacgacgcttTTCCATCGTCCAGAATGAACAACGGCTCGACGGAGACTGACAGTAACAAAAAGGAGGAGAGCGAGGAAGAGGGCAACGGCGAGTACAAGTGTCAGCATTGCGATAAAATCATGGCCACGAAGAAGGGTCTACGCCGACACGTCGCCATGCACAAGCCCAAACCAGAACCCGCCGTCTGCGAGATTTGCAAGAAGGTATGTGCCAGCCGAGCTCGCCTCACCCTCCATCAGAAGACTCACAATAAGCCCAAGGAGAAGGTTCCTCGGGAATATCTATGCCACATCTGCAGCAAAGTTTACCCGAGCAACTCCTCACTGACCTACCACATGCGCACGCACACGGGAGTGAAACCCCACGTCTGCAAGACCTGCAACAGCGGCttcacgacgacgacgagcctGGCGAATCATATGCGCATTCACACGGGCGACAAACCCTTCGTCTGTCACGTCTGCAGCGCGGCCTTCGCTGTGAGTTCGGCCTTCCGGAGGCACCTGACTCGGCACACCGGCGAAGCCAATTACCTCTGCAAGACGTGCGGCAAAGCCTTTAAACGACTCAGCACTCTCAAAGAACACACTTACACGCATTCCGGCGAGAAGCCCTACGTCTGCAAGACCTGCGGCGCAGCCTACAGCCACAGCGGCAGTCTCTTTGCGCACCAGAAGCGCTGTCGCGCCCAGTTCACGGAGATGGTTGTCGAGGACCATCATCACTCCGTTGCACATCACATACACGTCAACAACGTCCAGTCCGCGGTGCGATCGCTTGCTGTGATAGGCCAGATGTTTTGA
Protein Sequence: MAINNGYFVMPMNMDRVCRICLQENTNLSPIFCNGHEIGSNLTDISQKIQVCGAVECHEQDGLPALICDVCIYKASVAHEFRQLCQHSDARLRLYYNKPARFNATDSGTQTDLEVQELLTKTAEEIQNDYFVKQEVMTNQQFHNAISNEEYNPEPQTNTVVTTIESALPTVDVNMSVESDKLFNCHLAFEEQPKNIDKAPEVVACDTQTVECTQELIPVSTNLIDNVCTIEADMSTAEESDVKNDVSYFTYITKEEENIEENIEENIEENIAKNIAENIEQGENTVQKRTSARKTKAIPRTDLYEEMEDDNYFEPVSESQNSEETTFKCESCSKRFTTPKGLKKHQLTHEKQYKCEVCAKTFCKLENLEKHKNIHTTKPHACQVCHASFSKSQSLVKHLKSHTEKVNDVAKQISTDEQTPAEIEPKKSPKSEESDDDSGTVNEPDGFENAPEIFKCEECGQYCSTLKNLKRHALIHGERKYSCTVCKKWFFRPDTLKKHAERHGHGLLDNLADDNKLYDSDDDAFPSSRMNNGSTETDSNKKEESEEEGNGEYKCQHCDKIMATKKGLRRHVAMHKPKPEPAVCEICKKVCASRARLTLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHMRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQFTEMVVEDHHHSVAHHIHVNNVQSAVRSLAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01274733;
90% Identity: iTF_01036464;
80% Identity: -