Basic Information

Gene Symbol
Trerf1
Assembly
GCA_009193385.2
Location
NC:29000527-29211883[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-09 9.3e-07 28.4 0.1 2 46 1392 1436 1391 1436 0.96

Sequence Information

Coding Sequence
ATGACAGCCATTAATTCGGGCCCGGTGGGCGAGGTGGGCGGCGTCCGACTGCCCCTGCAGTCGCTCCACGGCTACGGCTCGGTCTTCATGTACTCGGCCTCGACGAGTCCCGGGGGCGGCAGCGGGGGCACCAACAGCAGCGGAGTTACGTCTGTCGGCGGCGGAGGAGCCGGACAGTCGGGGACAGCCACGGGCGAGGTGACCCTCAGGCTTCGAGAGCCAGAGGACATACCCGAGGAGGTACTCGCTAGGCTAGAGGACACCGCGACACTCTCCATCTCGCTGCAGGGCGACGCTGTGCTCAGGCTAGGCGCCGCTACCGCAGGAAACGGAAATTTGGAGCTGTTCGATAGTGAGAGCGGGCCGGATCTCACGCTATCGCCCCAGACGTTCACGTCCACGGCGGAGGCCTTCATCAATGACAATAGCGACAGTCTCGGAGTGCCGGGCGACAATGACACGGGTAGCGGCGAAGAATCGAGGCCGGGCGTCGGTGACCCCAGCAAGTTGGGCGTGAAAAAGCCGAGACCCAAGGCTTCCTCGCCTAACCGACAGGGGCCCCAGCAGTGTCAGGTATGCGGCAAAGTGTTCAACAACGCATCGGCGCTCACGAAGCACAAGCTGACGCACAGCGACGAGCGGAAGTACGTTTGCACGATGTGTGGCAAGGCGTTCAAGCGGCAGGACCACTTGAACGGTCACATGCTAACCCACCGCAACAAGAAGCCTTACGAGTGCAAGGCCGAGGGTTGCGGCAAGTCCTACTGCGACGCGCGGAGCTTGCGCCGCCACACGGAGAACCACCACGCGAGCAACAAGGTGAACGAGAGCACGAGTCCGAGCAGCCCCGCTACGGGTCCGAATACGCCCAACACGCCTGGGAGTAATCCCAGCACGCCCAGCACACCGGGAGGCTCAGCTGCGGCCACTGCGACGCCACCAGCTCACGGGCACACGGCGCTCAAACAGCTACTCGCTTCCGAGCCTCAACCTGCTCAGATCAAGGGGTCTACCGGTCCGGGCGGCAGCAACGAAGGCCTGACGAAGCAGCAGCTCGAGCTGATCCAGCAGATAATGCAGCAGAcccaacaacagcaacagcagcagcaacagcagcaagtCACTGTTCAGACTCAAAATCAGACACAGCAACAGCAAAGCACGACGGGGACGACGACGAACGGCCAGGTGCAGAAAACCGGGGCGAAGCCTATCGTCAAATCATCGACGACGATCTCAGGGCCGATAGTCAACGCCGTCACTGCGAGTGTCGCCGCCAGCAGGTCTAGTCCTAAGCCTAAGGTCTGGAATCACGCTCATcagcagcaagctcagcagcagcaggcccaacagcagcagcagcaacaacaacatcagcagcatccccagcagcagcaacagccacagcagcagcatcagttGCCGGTACAGGCAAACTCCCCGGGTAACAATAGTACCGGCAAGGTCTCGGGTGGTCTATCGCCGGCAAGCAACAGCAACAGTTCGTCCTCTCCGGGAACTGCCACCGTCGTCGTCTCGGCCAAGTCACCGGTCGAACCGAAGCCCGTCGAGTGCAACCTCTGCCACCGCAAGTTCAAGAACATACCTGCGCTCAACGGCCACATGAGGCTTCACGGCGGTTACTTCAaaaagGACGCTGAGAACAAGAAGAGCGAGAAGAAGGAGGTCGTGGGTCCACCTCTTCAAACAGCCTCCGTCAGCGTTCGGGCTCTCATAGAGGAGAAGATCATCCAGAAGAGAACGACAGCAACGGATGcaaacgcagcagcagcggcagcggcagcccAACAACAGCAGCGTGCCAACGCGGCGAGCTTTGCCAGCCAGCAGACGACGAGTAGCTCGGCGTCGACGGAGGTCCAAGCACAGCAGCAAccgcaacagcaacagcagcagcaaccacagcaacagcagcagcatgtCATAGGGAAGATGAATTTCGCGGTACCGGCACCGCCACCGCTGGCCGGTGTCGAGAAGACGCGGAGACTCTCCGATGGCGAGCATTTCAGACAGCCCAATGTGACCATCGCTGGACATGCTAGTTCCGTGCAGAAACAGCTTCAGGAAGCACAGACGCAGGCGCAGGCTCAAGCGCTCGCCGATATGATTCTCAAGGGCACGACGAAGATGGCCGTGAAGCGCGCGACCTCGGATCCAGGGCAGCGGGTCCAGCTGACTTACCAAAGCACCACCAATgcccagcagcaacagcaaaacgcgcagcaacaacagcagccaACCATTACCGAGAGCTTCACGATGACCGGATATCCCGAGGACGGCGGCTACTTCAGTCCCAGTCTGCAGGACGAAGTGTTCCAACAGGTGACCTCCGTGCCGGACAGCGTACTGCTGCATGCTACACAATTAGATGCTTTACAGTTCCAAACGTCGAGTCTGCTGCAAGACCAGTCGGGCAACGAGACTCTCCCGGACATCAACTTGGAGGAGCGTTTCTCATCCCAGCACACAGTCAACCCGGACCTCCAGGCGCTCGTTAATTCACCCCTGCCAGACTCCCTCGCCGAGTTCAGCACCTACGGAGCCAACTACAACGACGGTTCCCACACTCTGCCCAGCCAGTCGCCGCTACCCTCGCCGTTGACGCGACACGACAGTCCCAGCTTCACTTACCCAACGCCACCGGCCAGCCAAGAAGGTTTACTGAGCGGTAGTCTACCTCTGCTCAGTCCTCAGGAGGACAGCGACGCGGTCCACTCGGTCTCGTCGCCGCTATCCGCGGCTTTCTACAGCACGAGCATGTCCTCGGTCGCGGCTATCGAGGAGGCGCTCAGCGAAGTCCTGCCCGACGAGGCCGACAACGACGGCGCTGATCTCTACGGCTCCGGATGTCCCAACCCACACTCACCCTTACCAAGTCCTTTATCCGCCACTCCGGCACCGTCGCCACTCTCCTCGCTACCACCGTCGTCTGTCTCGTCACCGGGACCGGGGAGCTTCACCACCTCGAGTTTTCCCATGTCGCCCCATCACACACTCCAGAGCCAGATGATGCCCAACTCCGAAGATCCTCTGTTGTCCTCCAGTCCCAAGGACTTTGGCGCTGGCAGACGGAAGTTCGAGTTCCAGTCGTACAAGCTCATCACCAATCAGAACCTCGTGGACTTTGGACTGGGCAACGGGAGCGTCGCTGGCATCGTTGTCGATAACAACGGGGAGTTCAAGCTCATACAAACCGCGGGCCTGCAGAAGGCGAACGTCTACGTGCAGGCGGGCGCTCTCAGTCCGGCTTTGGCGTTCAGAAAGGAGATCTGTCAGGTTGGTCCGAAGCTGGAGCAGGGGAACATTAACGTCAACGTTGTTAACGGCCAGAATATGAATCTGCAGAACCATATTTACCAGCAGACTCAAGTTCACCAGCAGGCCATAAACCCAGCGAAATTCCTTATCCAGATAAATCAAGCTAACAAGCCCAACCTCAAGCACAAGGCTATGTCGGTACCAGCAGAGCAAGTCAAGGAAGAAGAGTCTCTCGACGAGGACGTCTTCCTGAGCCCCAGCAGTGTTCCCATGACGGCCTCGGGTAGTCCGGCTCGTCACTACAAGAAGCGACCGCGACTCGATGGTCCTATGCACTGTAACAGTGGTACCAGTAGCTGCTCAGCGATCAACGGCTCGCACTCGTATCCGTCGCGATTACGACGCGCCTGTGATCGTCACTGGGACAGCAGCTACACACCTCCACCGATCTTGGATCCCTCGAGACCAGGTTCTGGGCTCTATGCCCGACTGCATCAGAACGAACGTGACTGTGTGGACTTCAGCTCGGACGATTCACAGGGCAACGACGGACCGCCGCCGAGGATCAACATCGGTACCAGGTACCAAGCGACGATACCCCAGGTGGTCGAAAACGAGTGCGAAAGGCTCGCCGCCACGGAACCCGAGATGGACCATCTGCTGTGGGACCCTGGCATAGACAGTGCCCTCACCGAGACCGAATTGGAAATGTATCTGCAATTCGCCTGCTGCGCTGCTGTTCCCGGCGGTGGTAGAAATAAAGAGTATGCCCTTCATCTTTTACACATGTGCAGGGGTAATATTCGAGAGGCAATGCTGAAGCTTATGAGACCCACGCCGAGTCTAGAATCGGAACACCCACTTCTCAGCTACGAGTGCCAGGAATCCGATCGTTGGACGTCTCACGAAATGGACTTATTCTATCAGAGCCTGCTAAAGTACAACAAGGATTTCGGAGCGATAGCTCGGGAAATCGGAAGCAAAAGCACCAAGCAGTGCGTACAGTTTTATTACCTGTGGAAACGACTCTGCCCGGACGAGTATAAGAGGCTGCGATTGCGCTACGGCAAGCCGAAGATTCAGTCCGATTTTGGCAGAGACGGCAAGGATACTAAGGACCTGTGCGACGCTATCGCTGCGGTCGCGGAGCTGGACTTCAGTGAAGGAAAGTCCATACTCCATCGAACTCTGATGCAGACGACGAATGAACGAGAAAACTCGGCTACTTTGACAACTAGCGAAGGAGAATTGCGACTCTTTGCGTATGATTGTCAAGATAGCTTTAGCGGGAGCGTAACAGTAACGATGGCCGGGAGCGCCCAAGTCGCTCGTGCCTCAAGCTGCACCGGCAAAGCCGGTGGCGCTACCGGCTACGCCACAGTTGACCACACCAACTCACAAACTCACACTAGTACCGAGCAACAACTACCCGCGCCCACCCCACTTCACTACCCCTGCAAGATTTGCGGGAAAGTATTCAACAAAGTGAAAAGCAGAAGTGCTCACATGAAGTCTCATCGGCCAATACCCTCACTCGATTCAACGGTACAGGAATCTAgaaagcaacagcagcagcagcttcaaCTTCAGCACAACGTGCAACATATTCAGCCTAATCAGATCCAAATCCAGACAAGCAGTGTACAAGTTCAGCACCTACCACAACAGCAAAATCACCTGCTGATCCATGCGCAAGACTACTACCAACAGCATCGACAATCACAGCATCATCACCCAGATCAGCAGCAACAGCTTCAAGTTTCGTCGATGAGCTGTAACGTTCAGACGAGCCACGTATGGCATAACCCACCAAGACTTCGGCCGCCATAG
Protein Sequence
MTAINSGPVGEVGGVRLPLQSLHGYGSVFMYSASTSPGGGSGGTNSSGVTSVGGGGAGQSGTATGEVTLRLREPEDIPEEVLARLEDTATLSISLQGDAVLRLGAATAGNGNLELFDSESGPDLTLSPQTFTSTAEAFINDNSDSLGVPGDNDTGSGEESRPGVGDPSKLGVKKPRPKASSPNRQGPQQCQVCGKVFNNASALTKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHASNKVNESTSPSSPATGPNTPNTPGSNPSTPSTPGGSAAATATPPAHGHTALKQLLASEPQPAQIKGSTGPGGSNEGLTKQQLELIQQIMQQTQQQQQQQQQQQVTVQTQNQTQQQQSTTGTTTNGQVQKTGAKPIVKSSTTISGPIVNAVTASVAASRSSPKPKVWNHAHQQQAQQQQAQQQQQQQQHQQHPQQQQQPQQQHQLPVQANSPGNNSTGKVSGGLSPASNSNSSSSPGTATVVVSAKSPVEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKSEKKEVVGPPLQTASVSVRALIEEKIIQKRTTATDANAAAAAAAAQQQQRANAASFASQQTTSSSASTEVQAQQQPQQQQQQQPQQQQQHVIGKMNFAVPAPPPLAGVEKTRRLSDGEHFRQPNVTIAGHASSVQKQLQEAQTQAQAQALADMILKGTTKMAVKRATSDPGQRVQLTYQSTTNAQQQQQNAQQQQQPTITESFTMTGYPEDGGYFSPSLQDEVFQQVTSVPDSVLLHATQLDALQFQTSSLLQDQSGNETLPDINLEERFSSQHTVNPDLQALVNSPLPDSLAEFSTYGANYNDGSHTLPSQSPLPSPLTRHDSPSFTYPTPPASQEGLLSGSLPLLSPQEDSDAVHSVSSPLSAAFYSTSMSSVAAIEEALSEVLPDEADNDGADLYGSGCPNPHSPLPSPLSATPAPSPLSSLPPSSVSSPGPGSFTTSSFPMSPHHTLQSQMMPNSEDPLLSSSPKDFGAGRRKFEFQSYKLITNQNLVDFGLGNGSVAGIVVDNNGEFKLIQTAGLQKANVYVQAGALSPALAFRKEICQVGPKLEQGNINVNVVNGQNMNLQNHIYQQTQVHQQAINPAKFLIQINQANKPNLKHKAMSVPAEQVKEEESLDEDVFLSPSSVPMTASGSPARHYKKRPRLDGPMHCNSGTSSCSAINGSHSYPSRLRRACDRHWDSSYTPPPILDPSRPGSGLYARLHQNERDCVDFSSDDSQGNDGPPPRINIGTRYQATIPQVVENECERLAATEPEMDHLLWDPGIDSALTETELEMYLQFACCAAVPGGGRNKEYALHLLHMCRGNIREAMLKLMRPTPSLESEHPLLSYECQESDRWTSHEMDLFYQSLLKYNKDFGAIAREIGSKSTKQCVQFYYLWKRLCPDEYKRLRLRYGKPKIQSDFGRDGKDTKDLCDAIAAVAELDFSEGKSILHRTLMQTTNERENSATLTTSEGELRLFAYDCQDSFSGSVTVTMAGSAQVARASSCTGKAGGATGYATVDHTNSQTHTSTEQQLPAPTPLHYPCKICGKVFNKVKSRSAHMKSHRPIPSLDSTVQESRKQQQQQLQLQHNVQHIQPNQIQIQTSSVQVQHLPQQQNHLLIHAQDYYQQHRQSQHHHPDQQQQLQVSSMSCNVQTSHVWHNPPRLRPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_01037316;
80% Identity
iTF_01037316;