Basic Information

Gene Symbol
ct
Assembly
GCA_009193385.2
Location
NC:11288960-11401628[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 6.2e-28 3.9e-24 84.0 0.0 2 72 552 623 551 628 0.95
2 3 1.6e-29 9.9e-26 89.1 0.0 3 77 981 1060 979 1062 0.91
3 3 2.8e-31 1.8e-27 94.7 0.0 3 75 1228 1301 1226 1305 0.96

Sequence Information

Coding Sequence
ATGCAAGCCTCCGCCGAAGCCAGCTCCCTCGACCTCCAGGCCATGCAGTCCATGGAGTGGCTCTTCAAGAAGGAGCGCATCTACCTGCTCGCGCAGTTCTGGCAACAGAGGGCTACCTTAGCCGAAAAGGAGGTGTCCGCGCTGAAGGAGCAGCTCGCCGCTGCGACCGATGGGAATTCCAAGACTGAGGGACAGCAATTCTCCCAAAATGCCGAGCAGAGTCAAGACGCCAACAATCCGAGGCGGACGCCCAACAGCAACCACGAGCAGGAGCTGCAGGCCAAGGATAGAGAGATCAACCAGCTGATGGAAGAGGTGTCGAGGCTGCAGATGAACCTGCAACGATTGCAGGAGAGCACCGCTCAGACGACTTCCAGATTGGAGGAAGAGCTCGAAGCTCGCCGCCAACACATCAACCGGCTCGAAGCCAAGCTCGAGCGACAGAAGGACTACGACGAGCTGAAGCGCGAGATCAGCGTGCTCAGGTCGGTCGATCTCTCGCAGATCCCGACCGGCGAGTCAGGCAAGAGCCTCGAGCAGGTGCTCATCGAGCGCTCCAAAGCGCTGCAACAGGCGGAGACGCTCAAGCCGCCCAGCACACCCGATGCTCTCGGTGGACTCACGTCACCCCTGCAGCGGGCCGCGACCGCTTCGCCGCACGGTGTCAGCGGCGCGGTGATCGCGCCACCCTCGTCCTCCCTCGTGCAGTCCTCCCATCAGTCTTGCTCGCAGCCGCCGAGCCGCTCGACTCCGACgccctcgtcgtcgtcggcgccCACCCCGACCCCGACCTCCTCGTCCTCGCTCCTCTTCCCACCGCCCCTGCAAAACGTCGAGACATTCGGCTCGTTCCTCGGCGAGGAAATCGTCGCCAACTGGAGGCGATCCCTGGAGAGGTCAATCAtgagtcagcagcagcagcagcaacaacagcaacagcagccgtCGACTGCGACCGCGACTGCCCAGGCCTCCACGCTCGGTCTCCATCCTCAGGCCTCGGCGCTGCAGGCTCTGCCCGCTAGTCTAAATCACCTTCCGTCGCCAACAGATCCGATCTCCAGCTCGAGCACCCCGGCCAAGTCGAGCACGCCCCTCGGCAGCGGCAGCACCGCCTCGGCCCTCGACTCCGCGGAGAAGGCGACGACACCGGTCTCCGGACACGAGACTCCGGCCCCGCCCACGCCCTCCTCCACGACAACGCTCACCTCGCCGCCGAGCGCGATGCAGCTCCTCCAGCCACCGGCTCATCAGCAGCTGCAGCCACCAACCGGCTCGGAGTCCTCGTCGCAGCCTGCAATGATGAACGGGCCCCTCGCGGCCTCGgtcgcagcggcagcagcagccgccgccgccgccaacCCGCCGCCCAAGAGCCCCGCCGAGGAGTCCGTCTgtcacaacaacaacaacaacagccaCCACCTggccaacaacaacaacatcgGCCCCGCCAGCGCTACCGGCCTCAGCGTCCTTGACAGCCTCAAGAACCCGTTCCGCTTTGATGAGCGCTCCCACCCGTTCCGCTTCGGCGACGAGTTCGGCGCCGCGGGCATGGCCGGACGCCTCGGCGAGTCCCTCATACCCAAGGGCGACCCCATGGAGGCACGGCTCCAAGAGATGCTGCGCTACAACATGGACAAGTACGCCTCGcagaacctcgacacgctacACATCGCCAGGCGGGTGCGCGAGCTGCTCTCGATACACAACATCGGCCAGCGGCTCTTCGCCAAGTACGTGCTCGGCCTGAGCCAGGGAACCGTCAGCGAGCTGCTCAGCAAACCCAAGCCCTGGGACAAGCTGACCGAGAAGGGCCGCGACAGTTACCGAAAAATGCACGGCTGGGCCTGCGACGACAACGCTGTTATGCTGCTCAAATCCCTCATACCCAAGAAAGAGTATGTTTCAGGCAAGGAGCAGGGCATGCCCGCCTTTGCGCGCGGTCCCCAGGAGCCCGGCGCAGGCGGTAACGGCAACAACGGCAACAGCAGCGGCCCGACCTCGGGAGTCGGCCAGGACATGAGCGAGGAACGTATCGCCCACATGCTCAGCGAGTCCGGCCACATGCAGCTGAGTCGACAGAGCGAGGCCGACACCTCGAACGACGCCGACAGCAAGAGCCCAAGCCGACTGAACTGCCCGAGCCCGTTCGGCAAGGACCGCAGTATGGACAGCCAGAACCGCAGACTCAAGAAGTACGAGAACGACGACATTCCCCAGGAGAAGGTGGCCAGGATCTACCAAGAGGAACTGGCCAAAATCATGGGCCGAGATATGCGCGGACCTCGAGACTTCCCTGCCAGCGCGATGTTTCCGCACTTTTTCAGCGGGCAGAACCTGCAGGGCATGGAGCGCACCCAGGAGGAGATCCGCATGGCTCTGGACGCCTACCACCGCGAGCTCCAGAAGCTGAACGTGGCCCAGGGTCTGCCCTACCCGCCACAGATCTCGGGCTTGCTCGCCCTCCAGCAGCACGCCATCCAGCAGCATCACCTGGCGACGAACGGGGGCGCCGGCACCGGCTCCGCGGCggcagccgcagcagcggcCGCCCAGGACCTCAGTCTCGGCAACATACTTAGGAGCAAGATGATAAACGGCGTCTccgaggaggagaaggagaagatGGAGGAGGCCATGAGGCACGCGGGTAGCGCGTTCTCTCTGGTCAAGCCGAAGCAGGAGCCGGCCGGTGCCCAGTCGACGCCCGGCGGCTCCAGCGCCAGTTCGCCACTTGGCAACTCGATCCTGCCGCCGGCGATGACGCCCAGCGAGGAGTTCGCTGGCGCCGCCGCGGCCAGCCCCCTCCAGAGGATGGCCTCCATCACCAACAGCCTCATCAGCCAACCGTCCACGCCGACCCACCACTCGGCCAACCAGCGGCCGCTCAAGGCTGTCCTGCCTCCCATCACCCAGCAACAGTTCGACATCTACAACAACCTCAACACCGAAGACATTGTCAAGAGGGTGAGGGCTTTTGTGAAGGAGCAGCTCTCCCAGTATTCGATCTCTCAGCGTTTATTCGGCGAATCCGTCCTGGGACTGTCCCAGGGCTCCGTATCGGATCTCCTGGCTCGTCCCAAGCCCTGGCACATGCTCACACAGAAGGGCCGCGAGCCCTTCATCCGCATGAAGATGTTCCTCGAGGACGACAACGCTGTACATAAGCTGGTTGCCAGCCAGTACAAAATCGCACCGGAAAAGCTCATGAGGACCGGCGGCTACGGCGGCCTGCCTCGTAAGTTTAACTCAGCTTGTGGAACACCAATGAAACCCATGCCACCTACAAAGCTCGTTCAAGAGCAGTTGCAGAACGCGGCGAAAGCTCAGGCAGCCGTACAGGCAGCTGCGCAAGCCGCAGCGGCCGCCCAGCATCAGCAAGAGAGCCAATTGCAGCTCGGCCCGCCTCAGCAGAGCCCGCAGCTTCCAGTGCATTCGCAGCCGTCGCCGATGATGCTGACTCCGCCTGGACCCATCCTCACCCACTCCCAGCTCAGCATGCAGGAGCTTCAAAagaagcagcaacagcagcagcagcaacagcagcagcaacagcagcaacttCAGGGGCCCGGCCAGATCAGCCTGCATTCGCCGCATCAGATGGCTCCGTCACCTCTGCGCGCCCTACACCCACACATCTCGCCCAGCGTCTACGAGCTGGCAGCCCTCACTCAAGATATGGACACGCAGACGATCACGACAAAGATCAAGGAGGCCCTGCTGGCCAACAACATCGGCCAGAAGATCTTCGGCGAGGCGGTCCTCGGCCTGTCGCAAGGCTCCGTCAGCGAACTGCTGAGCAAACCCAAGCCCTGGCACATGCTCAGCATCAAGGGCCGCGAGCCCTTCATCCGCATGCAGCTCTGGCTGTCCGATCCACACAACGTCGACAGACTGCAGTCTCTGAAGAACGAACGGCGCGAGGCCAACAAGAGACGACGCAGCAGCGGACCCGGACACGACAACAGTTCCGATACCTCGAGCAACGATACCGCCGAGTTCTATCACGCGGCGTCGCCCGGTCCCGGACCTGGACCCACCTCTGCCAAGAAGCAGCGCGTTCTCTTCAGTGAAGAGCAGAAGGAGGCTTTGCGGTTGGCCTTCACACTCGATCCCTATCCGAATGTAGCCACGATCGAGTTCCTCGCGAGTGAGCTCGCCCTCTCCTCGCGAACGATCACCAACTGGTTCCACAACCACCGCATGAGACTGAAGCAGCAGCCACCGCACGGCCAGCCGGAGCCCCAGTCGGCCCGCGAGCCCGGACAGCCCTTCGACCCCGTGCAGTTCCGGCTGCTCCTCCAACAAAGACTGCTGGACATCCAGAAAGAGAGACTCGGCCTCGGCAGCGTGCCTCTCGCGTACCCGCCCTACTTCAACCCGAATCTCGCAGCCCTAGTCGGGAATGCGCTCAAGGAACAGTGCTCCGGCCTCGATCTCTCCATGGGATCGCTCAAACGTGAGCCCAACCAAGAATTCGAGGACGATGACGCCGAGGACGCAATGAGCAATCTCGGCAGTGAGGACTCGGAAGGATCCGCCGCCAGCATAAAGCGCGAGCCGACCGAGACTCCGGCACCAGCCAACAGTTCGACCTCGAGGTCGAACAGACGAAAGCCTGCCGCACCGCAGTGGGTGAATCCCGAGTGGCAAGAGCCCGCGAGGACCGGCGACGAGGTCATCATCAACGGCGTCTGCGTCATGCAAACCGATGACTACGGCGTCAAGCGAGAGACCGAAGAAACGGTAAGAGTCGAGCCGACGCCGGTTCCGGACAGATACGAGGAGGACGCCCAGAGCGACGTGTCGTCGGTCTCCGCGGCCAACGTGCCGGACCGACAGAGCCTCTCGCCCAGCCCCAAATCCGCGCAGAACAGCCCCACCACGTCGCCCAGGCCGCCCTCGGACCCGCAGCACGGACAAGCGCCTGCCGAGGACAGTCCGAAGGACGTCGTCAAGAACGAACCCGAAGAAGCATGGGACTACTAG
Protein Sequence
MQASAEASSLDLQAMQSMEWLFKKERIYLLAQFWQQRATLAEKEVSALKEQLAAATDGNSKTEGQQFSQNAEQSQDANNPRRTPNSNHEQELQAKDREINQLMEEVSRLQMNLQRLQESTAQTTSRLEEELEARRQHINRLEAKLERQKDYDELKREISVLRSVDLSQIPTGESGKSLEQVLIERSKALQQAETLKPPSTPDALGGLTSPLQRAATASPHGVSGAVIAPPSSSLVQSSHQSCSQPPSRSTPTPSSSSAPTPTPTSSSSLLFPPPLQNVETFGSFLGEEIVANWRRSLERSIMSQQQQQQQQQQQPSTATATAQASTLGLHPQASALQALPASLNHLPSPTDPISSSSTPAKSSTPLGSGSTASALDSAEKATTPVSGHETPAPPTPSSTTTLTSPPSAMQLLQPPAHQQLQPPTGSESSSQPAMMNGPLAASVAAAAAAAAAANPPPKSPAEESVCHNNNNNSHHLANNNNIGPASATGLSVLDSLKNPFRFDERSHPFRFGDEFGAAGMAGRLGESLIPKGDPMEARLQEMLRYNMDKYASQNLDTLHIARRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHGWACDDNAVMLLKSLIPKKEYVSGKEQGMPAFARGPQEPGAGGNGNNGNSSGPTSGVGQDMSEERIAHMLSESGHMQLSRQSEADTSNDADSKSPSRLNCPSPFGKDRSMDSQNRRLKKYENDDIPQEKVARIYQEELAKIMGRDMRGPRDFPASAMFPHFFSGQNLQGMERTQEEIRMALDAYHRELQKLNVAQGLPYPPQISGLLALQQHAIQQHHLATNGGAGTGSAAAAAAAAAQDLSLGNILRSKMINGVSEEEKEKMEEAMRHAGSAFSLVKPKQEPAGAQSTPGGSSASSPLGNSILPPAMTPSEEFAGAAAASPLQRMASITNSLISQPSTPTHHSANQRPLKAVLPPITQQQFDIYNNLNTEDIVKRVRAFVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGGLPRKFNSACGTPMKPMPPTKLVQEQLQNAAKAQAAVQAAAQAAAAAQHQQESQLQLGPPQQSPQLPVHSQPSPMMLTPPGPILTHSQLSMQELQKKQQQQQQQQQQQQQQLQGPGQISLHSPHQMAPSPLRALHPHISPSVYELAALTQDMDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDPHNVDRLQSLKNERREANKRRRSSGPGHDNSSDTSSNDTAEFYHAASPGPGPGPTSAKKQRVLFSEEQKEALRLAFTLDPYPNVATIEFLASELALSSRTITNWFHNHRMRLKQQPPHGQPEPQSAREPGQPFDPVQFRLLLQQRLLDIQKERLGLGSVPLAYPPYFNPNLAALVGNALKEQCSGLDLSMGSLKREPNQEFEDDDAEDAMSNLGSEDSEGSAASIKREPTETPAPANSSTSRSNRRKPAAPQWVNPEWQEPARTGDEVIINGVCVMQTDDYGVKRETEETVRVEPTPVPDRYEEDAQSDVSSVSAANVPDRQSLSPSPKSAQNSPTTSPRPPSDPQHGQAPAEDSPKDVVKNEPEEAWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2