Nlon009714.1
Basic Information
- Insect
- Nasonia longicornis
- Gene Symbol
- -
- Assembly
- GCA_000004795.1
- Location
- GL277977.1:637955-641311[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.59 38 4.8 0.4 1 23 132 155 132 155 0.91 2 14 8.1 5.2e+02 1.3 0.3 1 23 221 244 221 244 0.81 3 14 1.2 78 3.9 1.0 2 23 304 326 304 326 0.94 4 14 5.5 3.6e+02 1.8 0.3 2 23 405 427 405 427 0.76 5 14 3.2 2.1e+02 2.5 0.4 1 23 450 473 450 473 0.83 6 14 0.32 21 5.7 8.6 1 23 488 511 488 511 0.94 7 14 3.6 2.3e+02 2.4 1.3 1 23 521 544 521 544 0.93 8 14 4.1 2.6e+02 2.2 1.8 1 23 558 580 558 580 0.81 9 14 0.00056 0.036 14.4 1.5 1 23 593 616 593 616 0.98 10 14 0.02 1.3 9.5 2.5 1 23 634 657 634 657 0.96 11 14 0.00018 0.012 15.9 2.1 1 23 663 686 663 686 0.95 12 14 0.00039 0.025 14.8 1.2 3 23 693 714 691 714 0.93 13 14 0.0031 0.2 12.0 2.0 1 23 719 742 719 742 0.97 14 14 7.1e-07 4.6e-05 23.5 0.3 2 23 749 770 748 770 0.97
Sequence Information
- Coding Sequence
- ATGGCAAGCGGTATACTTCCTTTATGTGTCGCCAAAAAGCTTTTTGTTCTTTCACCTTCACATCCTCGATCAGAAAGACAGCAAAGTTTTTCGGTGCGTGCAAgcgaacttttttcctccaaaATTATAACATGCCAGCAGAACGCCGCAAGaaaaaatcgACTGCCGGTCATTAGACCCATTGGTGGTGGCAAGCATCTGGTCTTCCAAAAGAAACTCGTCAAGATCAGTACACCCTTGATGAGCAAGCTCTTGTCCGTCGCCACTCCAAAGGTTCAGGTGAAGATCGAGCCGCCTGAGATTCCGAATCCCGGAGACTTTGAAGAGGTCACCATCGACGGCGCCAGTTCATACGACACTGTCGCTCCGAAAAAGAAACACGATTTCATAGTGTACATGTGCAAAAGCTGCAAAATGTATTTCCCTGTGCGGCAAATGCTCGTGGATCACAACGCCAAGGTCCATGCACCCCAGAAGTCTCCTGCCGCAGTGATTAGCAGAGTGGCGAACAAGGTGATACAGCAGACCAAGACAATTGCGAGTCctccgaaaaaaagacaaaagcgCATGCAGTCGATACTTTTGAAACCTAAAGAACCTCCTGCGAGTGGCGAGGCCAGAATCTATTTCACGGGCTACTACAAACTCAACAACGGCGATTACGTCTGCAACAGCTGCAACTTCAGCTCGAACATCCGCACAACCGTCGCCTCCCATGCCGCGCGCAAGCACAACTTACTCGGCTTTGAAAGCAAGGAAAAATCCGCGCCTTTAAAAGCTTCCACTGGAGAAGAATCGAATATTAAGCCAGAAGAGGACGACGAGGGCAGCTGGCCGGTAGAGGTAGTCGAGGAGGAGATAGAAGTCGAGCCTGACATAACGGATCCTCTGGCCGAAAATCAAGGTCGCTCCTGCCCATACTGTCCCTTCGTCTCGAGCATTGGCTCGACCTACCACTCGCACGTTAAGCGTAAGCATCGCGAGCAGTGGCTCAAGTCCGTTGCGAATAGAGTCGCCGCCCTCAGAACCACGCCATCCTCTGTGATGAACACCGCCGGCAGCCAGCTTACCTGCGCGTTCTGCCCCTTCCAGAGCTTCAAGCGCTCGACGATGCGCTCGCATGTCGTACGCAAGCACGAGATGACAGACCCCTTGAAAGACGACCCCGATCTCGCGGATATGCAGGCGCAGACCGAGGGCAAGAAGGTGCGCAAGTGTCCCTACTGCCCGTTCGAGTCTTGGGTCTACTCGACGATGAACTCGCACATTACGCGGAACCACGGTGACCAGCCTCACCCGCTTTTCTCCAAGAGCAAGCCGCGCTACAACGTGCAGCTGTTCACCGGCTACGCCTGCCACTACTGCAGCTTCGCAGCAGCCACGGTCATGAGCATCCGCTCGCATACCGCGAGGGAGCACACCGGCAGGAAGCAACCGCTGCAGCAGGTGCCAGTTGAGGAATTCGACTGCGACCAGTGCGACTACAAGACCAAGAGCCGGCGACACATGCAGCATCATCTGAAAGACTGCCACACGATGCTGGCCAATACGGAGGGCTTGTTCCAGTGTCATGCCTGCTCCTATGAGACGCTGTCGCGTATGGGTCTGCAGAGGCACGTGTCGATCAAGCACAGCGTGCTCGCCAGTAAGGACATTGCGGACAGCGCGTACTTCAAGTGCGAACAGTGCGACTACAAGACACTCAACTTCAAGCTCATGGACTGGCACAAGCGACAGCACAGCGAGGGGAACGACGGCGAGAACGATGGCAACAGCTACGAGTGCAACGAGTGCGACTTCTCCACGTGGACAAAGAGCCAGCTGTACCAACACATCAGAAGGAAGCACAAGGATGGCGATGGCAACGAGAAGGAGCCAGAACCTGAGTTCGAGCAGGTCTTCACCTGTGGACAGTGCGAGTACGTCTCCAAAAACAAGCACGCTATGAAGACTCATGTGCTCAGAAAACACACCGACGACTATCCGCACGAGTGCAGTCTCTGCGAGAAGAAATACAAGGTCAAGGCTGACCTCACCAATCACATCAGATTCCAGCACAGAGAGCAGCCGATAATCTGCGACGTCTGCGGCAAGACCTGCCGGAACAGCAATCTGCTCTATTTGCACCAGAAGTTCGCCCACTATAAGCCGGATTTCGAGTGCCACATCTGCCATCGTCGAATGGTCAGCCAAGCGAATCTCGATGACCACATACTGAAGCAGCACGAGCAAGTCGAGGAGTCGGTGTGCGAGGAGTGCGGCAAGACTTTCAGGAAAGCAGCTCGATTGAAGATCCACATGCGAGTGCACACCGGAGTGAAGCCAAAAAGGGAAGTCATTCAACATTTCTTATCTAGGtctgaatattttgtaaagaaaaatgatcTTAAAGAATGGAAGATCTAA
- Protein Sequence
- MASGILPLCVAKKLFVLSPSHPRSERQQSFSVRASELFSSKIITCQQNAARKNRLPVIRPIGGGKHLVFQKKLVKISTPLMSKLLSVATPKVQVKIEPPEIPNPGDFEEVTIDGASSYDTVAPKKKHDFIVYMCKSCKMYFPVRQMLVDHNAKVHAPQKSPAAVISRVANKVIQQTKTIASPPKKRQKRMQSILLKPKEPPASGEARIYFTGYYKLNNGDYVCNSCNFSSNIRTTVASHAARKHNLLGFESKEKSAPLKASTGEESNIKPEEDDEGSWPVEVVEEEIEVEPDITDPLAENQGRSCPYCPFVSSIGSTYHSHVKRKHREQWLKSVANRVAALRTTPSSVMNTAGSQLTCAFCPFQSFKRSTMRSHVVRKHEMTDPLKDDPDLADMQAQTEGKKVRKCPYCPFESWVYSTMNSHITRNHGDQPHPLFSKSKPRYNVQLFTGYACHYCSFAAATVMSIRSHTAREHTGRKQPLQQVPVEEFDCDQCDYKTKSRRHMQHHLKDCHTMLANTEGLFQCHACSYETLSRMGLQRHVSIKHSVLASKDIADSAYFKCEQCDYKTLNFKLMDWHKRQHSEGNDGENDGNSYECNECDFSTWTKSQLYQHIRRKHKDGDGNEKEPEPEFEQVFTCGQCEYVSKNKHAMKTHVLRKHTDDYPHECSLCEKKYKVKADLTNHIRFQHREQPIICDVCGKTCRNSNLLYLHQKFAHYKPDFECHICHRRMVSQANLDDHILKQHEQVEESVCEECGKTFRKAARLKIHMRVHTGVKPKREVIQHFLSRSEYFVKKNDLKEWKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01035789;
- 90% Identity
- iTF_01035789;
- 80% Identity
- -