Nlon009709.1
Basic Information
- Insect
- Nasonia longicornis
- Gene Symbol
- ZNF462
- Assembly
- GCA_000004795.1
- Location
- GL277977.1:623098-625825[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.7e-06 0.00044 20.4 5.5 2 23 45 66 45 66 0.97 2 18 1.1e-05 0.00068 19.8 0.9 1 23 72 95 72 95 0.97 3 18 0.32 21 5.7 0.9 1 23 102 125 102 125 0.91 4 18 0.0012 0.08 13.3 1.1 1 23 131 154 131 154 0.97 5 18 0.00028 0.018 15.3 0.1 2 23 160 182 159 182 0.94 6 18 0.00061 0.039 14.2 0.3 1 23 189 211 189 211 0.98 7 18 6.8e-05 0.0044 17.2 7.6 1 23 215 237 215 237 0.98 8 18 0.002 0.13 12.6 0.0 1 23 243 265 243 265 0.98 9 18 4.2e-06 0.00027 21.0 0.8 1 23 271 294 271 294 0.98 10 18 3 1.9e+02 2.6 0.6 1 9 534 542 534 557 0.72 11 18 4.5e-07 2.9e-05 24.1 3.7 1 23 563 585 563 585 0.99 12 18 1.5 1e+02 3.5 8.0 1 23 593 616 593 616 0.95 13 18 0.00023 0.015 15.6 4.8 1 23 622 644 622 644 0.97 14 18 6e-05 0.0039 17.4 0.7 1 23 649 671 649 671 0.98 15 18 9.1e-05 0.0059 16.8 0.2 1 23 677 699 677 699 0.97 16 18 0.00016 0.01 16.0 1.5 1 23 703 725 703 725 0.98 17 18 2.7e-05 0.0018 18.5 0.1 1 23 731 753 731 753 0.96 18 18 0.00043 0.028 14.7 0.5 1 23 759 782 759 782 0.98
Sequence Information
- Coding Sequence
- ATGAACTTCGAACGGATAGAAGATCTTTACCCGCAGTTAATACACGAATTCGATACAgattttttcgacgacgagCCCGAACAGTCTTCCGATTCTTCCTTAGAGCCCATCGAGTACAACCCGAATGGCCCAACCTGCCACCTTTGCGATAAAGTCTTCCGTCGAAACAAGCACTTACGCCTGCACATGAGCATACACCAGACCACCCAACCCTACCAATGCAATGTCTGCTCGACAAACTTCAAGACCGTCGAGTACCTCAATAGACACATGAATCTCATCCACGGCAACTCCAAGAAGCCGCATCCCTGCGACAAGTGCGATTACCAGGCGAGCTCGAAGATCAGACTCCGAGATCACGTGGCCTACAAGCACTCGACCGTCTTCAAATTTCCCTGCCATCTCTGCGACAAAAAATTCAAGGTAGACTGGGTTCTGAGGATGCACGTGCGAAAGTGGCACCAGAGTGGGCCGAGCTCCTGCGACATTTGCGACAAGGTCTACCCCAACGAAGGTGCCCTGTTCAATCACCAAGTTAAGAAGCACAAAAAGAACGACAAGAAGTTCCAGTGTACTGTCTGCAAGCAAAGCTTGGCCAGCCAGAGAAGTTTGGATGCGCACGTGAGGCTTCACAATATGAAGCACACCTGCGAGCACTGCGGTAAAATCTGCAAGTCGCAGAACAACCTTAAGAATCATTTGACTACGCACAGCGACGAGAAGAATTACGCCTGCCCAGTGTGCGACAGCGAGTTCACTCTGAAAGCAGCACAGCAAGTTCATATGCTGACGCATCTGGGAGAAAAGCCATACGTCTGTGATATAtgcggaaaaaaattcacgcaaCGATCGCCGATGATGCTGCACAGAAGAAAACTTCATCCGGACGTGAATCGACCGCCTCCgccgaaaatcaaaatttccgAACTGCTGGAGAGAgaaaaaagaaagatagtACGTAATCGTTTTAGAGATCGTCGCAAACAGCTAACGATCGTTGTAACTAACAAGTTCAATTTGTGTTTTAGGGCTGGAACGATCTGCTGGCAAGGACTAAACAACCAGCTAATAATCATCAGTGTGAAAAACGAGTACGATGCTCAGTCAGAGGTAGATCAAGCTTCTACGCAACAACGAGCTGTACTTCCACAACAGCAACAACGAATCATACttcctcagcagcagcaaccgcTCATAGTCTTACAGCAGCAGGGACAGCAGTCTCAGCAGCCGATTATTTTGTTTCAGCAACCGCATGAACAACAGCCATTAGAGCTGCAAGCTCCACAGCAAGAAGAAATTCTGCTCGAGTTCGAAAGTGGTGTTTCTGAAGATCCACTGACACAGATTTCGGAGGTTGCTGTTGTTGGTCCTactgcaaagaaaaatataaagagaatTCAAAATTCCAAGCGTAAAGCTTTCAAAACACGGAGTTCGTCGCAAGTCGCCAACAATCAAATGCTGATCTTGCAAGTTCAACCGTCTACTTCTCAAGAACCTTCTGCGAAACTCGAAAATGAACTCtcagacgacgacgtcgacgtgAAAGATTCCGAACTGAGCGAGGACATCTTCGTGCGCATCGACGCCGACCGCTACCGTTGTAACGTCTGTCAGAAAATCAAGCACGACCGACGCAGCATACTCAGACACGTCGTTGGTCAACACTCGCAGATACGGTCGTTCAAGTGCAACCAGTGCGACAAGAGTTTCAAGCGCAAGTATACCCTGGATATCCACCAACGCTCGCACGAGCACAAGCCTTCGGACGGTTACAAGTGCGAGAAGTGCGACTACCATACGCCCTTGAAAACTTCGCTATATCATCACCACTACCGCATGCATACCAACGAGTACCGCTTCACCTGCGAACACTGCGGTAAGCGCTGCAAGTTCAAGCGCGAACTCGTCGACCATATGGTCTCCCACAGCGACGAGCGCTACATGTGCGATATTTGCGGCAAGCTCTACAAAGGCGAGCATCTCCTCAGGGCGCACAGGAGAATTCACCTCGACCCTTACAAGTTTCCCTGCGCTATGtgcaaaaaaaagctcgcgacggCGGAGAGCTTGCAGAACCACATGAAGCTCCACAGTCGAACGTTCGAGTGCGACGAGTGCGGCATGAAGTTCTCCTGCAAACCCAATCTCATCAAGCACAGAAACGTGCACACGAGGGAGCAGGCTTTCACCTGCCCCGAGTGTGGCAAGGTCTTCGCCGATCAGGCGACGCAAAAGGTGCACTCGTTGATTCACGCTGGTTTGAGACCGTACAGATGCAACGTGTGCGGTCTGGGATTCACGCAGAGGACACCGATGATGCTGCACTGGAGGAGAAAACATCCTGGTGAGACGGAGCCGCCACCGCCggtttttttgaaaaatattctgaaGAGCATCGAGGAGCAGAACGGCAAGAAGGCGAAGCTGGAGAACAAGGAGTGA
- Protein Sequence
- MNFERIEDLYPQLIHEFDTDFFDDEPEQSSDSSLEPIEYNPNGPTCHLCDKVFRRNKHLRLHMSIHQTTQPYQCNVCSTNFKTVEYLNRHMNLIHGNSKKPHPCDKCDYQASSKIRLRDHVAYKHSTVFKFPCHLCDKKFKVDWVLRMHVRKWHQSGPSSCDICDKVYPNEGALFNHQVKKHKKNDKKFQCTVCKQSLASQRSLDAHVRLHNMKHTCEHCGKICKSQNNLKNHLTTHSDEKNYACPVCDSEFTLKAAQQVHMLTHLGEKPYVCDICGKKFTQRSPMMLHRRKLHPDVNRPPPPKIKISELLEREKRKIVRNRFRDRRKQLTIVVTNKFNLCFRAGTICWQGLNNQLIIISVKNEYDAQSEVDQASTQQRAVLPQQQQRIILPQQQQPLIVLQQQGQQSQQPIILFQQPHEQQPLELQAPQQEEILLEFESGVSEDPLTQISEVAVVGPTAKKNIKRIQNSKRKAFKTRSSSQVANNQMLILQVQPSTSQEPSAKLENELSDDDVDVKDSELSEDIFVRIDADRYRCNVCQKIKHDRRSILRHVVGQHSQIRSFKCNQCDKSFKRKYTLDIHQRSHEHKPSDGYKCEKCDYHTPLKTSLYHHHYRMHTNEYRFTCEHCGKRCKFKRELVDHMVSHSDERYMCDICGKLYKGEHLLRAHRRIHLDPYKFPCAMCKKKLATAESLQNHMKLHSRTFECDECGMKFSCKPNLIKHRNVHTREQAFTCPECGKVFADQATQKVHSLIHAGLRPYRCNVCGLGFTQRTPMMLHWRRKHPGETEPPPPVFLKNILKSIEEQNGKKAKLENKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -