Basic Information

Insect: Nasonia longicornis
Gene Symbol: -
Assembly: GCA_000004795.1
Location: GL277977.1:610940-613279[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.7e-05 0.0017 18.5 2.9 1 23 26 48 26 48 0.98

2 17 0.11 6.8 7.2 0.5 1 23 81 104 81 104 0.90

3 17 9.3e-05 0.006 16.8 1.4 1 23 122 145 122 145 0.97

4 17 2 1.3e+02 3.2 4.0 1 23 154 176 154 176 0.95

5 17 0.00067 0.044 14.1 0.2 2 23 183 203 182 203 0.97

6 17 3.4e-05 0.0022 18.2 1.3 1 23 209 231 209 231 0.98

7 17 0.00025 0.016 15.4 2.0 1 21 237 257 237 259 0.95

8 17 0.0019 0.12 12.7 3.5 1 23 317 339 317 339 0.97

9 17 2.8e-05 0.0018 18.4 2.2 1 23 345 367 345 367 0.98

10 17 1.1e-07 7e-06 26.0 0.1 1 23 373 395 373 395 0.98

11 17 0.00081 0.052 13.8 2.5 3 23 403 424 402 424 0.96

12 17 4.2e-06 0.00027 21.0 1.4 1 23 429 451 429 451 0.97

13 17 6.9e-06 0.00045 20.4 1.5 1 23 460 482 460 482 0.98

14 17 2.2e-06 0.00014 21.9 1.0 1 23 488 510 488 510 0.97

15 17 3.9e-05 0.0025 18.0 1.3 2 23 517 538 516 538 0.97

16 17 9.6e-07 6.2e-05 23.0 1.7 1 23 544 566 544 566 0.98

17 17 2e-05 0.0013 18.9 0.2 1 23 572 594 572 594 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.7e-05	0.0017	18.5	2.9	1	23	26	48	26	48	0.98
2	17	0.11	6.8	7.2	0.5	1	23	81	104	81	104	0.90
3	17	9.3e-05	0.006	16.8	1.4	1	23	122	145	122	145	0.97
4	17	2	1.3e+02	3.2	4.0	1	23	154	176	154	176	0.95
5	17	0.00067	0.044	14.1	0.2	2	23	183	203	182	203	0.97
6	17	3.4e-05	0.0022	18.2	1.3	1	23	209	231	209	231	0.98
7	17	0.00025	0.016	15.4	2.0	1	21	237	257	237	259	0.95
8	17	0.0019	0.12	12.7	3.5	1	23	317	339	317	339	0.97
9	17	2.8e-05	0.0018	18.4	2.2	1	23	345	367	345	367	0.98
10	17	1.1e-07	7e-06	26.0	0.1	1	23	373	395	373	395	0.98
11	17	0.00081	0.052	13.8	2.5	3	23	403	424	402	424	0.96
12	17	4.2e-06	0.00027	21.0	1.4	1	23	429	451	429	451	0.97
13	17	6.9e-06	0.00045	20.4	1.5	1	23	460	482	460	482	0.98
14	17	2.2e-06	0.00014	21.9	1.0	1	23	488	510	488	510	0.97
15	17	3.9e-05	0.0025	18.0	1.3	2	23	517	538	516	538	0.97
16	17	9.6e-07	6.2e-05	23.0	1.7	1	23	544	566	544	566	0.98
17	17	2e-05	0.0013	18.9	0.2	1	23	572	594	572	594	0.98

Sequence Information

Coding Sequence: ATGAAACCCATCATGAAATCCAATGTGATACTCCGAAATTTCAAGGTCATCACTCAACGACGTCAACCGCAGCAATTCGAGTGTGATCACTGCTCCAAGCCTTTCACCACTTACCATGCACTAGTTCTTCATGTCCGCAGCCACACTAAGGAGAGCGACTTCTCCGACGTCTGCGGTCAGCCTGAGATTTCCGCTGAAAGCCTTAAGGAACATATGAATAATCAGCAATGTAAGCTTAGCTTTAAATGTCCAGAGTGCAAGAAATGGTGCAAGTCTGCTCAGGGCGTTAGAATTCACGCTGCACGTGTTCACAATAAGAAACCGAAGACAAAGCAAATAAAGAAGATTCCCAAGGAAAAGAATTACATGTGTCTGTTTTGCAATAAGAAGTACAGATCGGAGGGATATCTCAAGAGTCACATGATAAAGGTACACGAAGATATGCCGCAGACAGAGTCCTATCGCTGCGAGCAGTGTGACTTCACGACTCTAAACAAATGTTTCATGAAGAAACACGTTTTGATTCACACTGGTTATCATAAGGTAACCTGTGAAGTATGTGGGAAAAAGATAGTTAAATCCTATTTGACCGAGCACATGAGAATTCACACAGGAGAGAAACCTTATATTTGCTGCTACTGTGGAAAGACgttcggaggaaaaaagtaccTGATAGTACACGAGCGGATTCACACTGGAGAGAAACCGTACCAGTGCCAGCTTTGTAATAAGAGATTCACACAGGTGTCACCCTTGAGGGTGCACATTCTGTGCCATATGAAGAAGAACGAGGCTGGTAATTCTTTTACTTTCAGGTCCATTCACGAGGAAAGCAATTCTCTGAGCGTAGATAAGATAAAAAacgaaacagaaaaagaaacggtGACCCTTAATCAACCAGAAAAACTCGTCGAAGAAAACAAGCCCGACGGAGGAGACCAAGAACGCTACCAGTGTCAGCTCTGCTCGAAGTGTTTCAAGTCCAAGAACCTCTACGACGGCCACTTGATATCCCATAGCGATGCTCGGCCTCACCAATGCGACATCTGCCTAAAGTCTTTCAAGCGGACCAACACCTTAGCGGTTCACCGCCGCATCCACACTCGTGAGCGGAATTTCGTCTGCGACGTCTGCGGTCGAGCTTTCGTCCAAGCTTCCCAACTAGCTACGCACCAGAGGCGGCACTTTGACCGGTTCACGCGACACTGCGCTCTCTGCGACAAGGGATTCTTCACCAACGCCGAGCTGCACAGTCACATGAACGTCAAGCACGCAGCTAATCAACACGTCTGCGATGCCTGCGGCAAATCCTTTCCGAACAATCACTCGCTGGCAAGACATGCCAGAAGCCACGATCCGGATTTCGAGCCGGCGAAGCATCAGTGCGAGTTCTGCGGCAAGACATTCGCTTACCGAAACTCTCTGGTAGCGCACGTCAAGTCCCACACTGGGGAAAACAAGTACGACTGCCATCTTTGTGGGAAAAGCGTGTCATCAAAGGGATCGCTGCAGGACCATCTCAGACTACACGGGGGAGAGAAGAACTTAGTGTGCGACGTCTGCGGGAAGGCTTTTCACAAGCGGACGACACTCGTCGTGCACAAGAGGACGCATACGGGCGAAAAGCCGTACGTTTGCGAAACGTGCGGCAAAGCTTTTACGCAACACTCAACGCTGGTGATACACCGTCGATATCACACGGGTCAGAGACCTTATCAGTGCGGTCTTTGTAACAAGAGTTTTGTCTCCAAAGCGTTGCTAAATGGACATGGCAAAGTTCACGCGAATTCGAGCACTTAA
Protein Sequence: MKPIMKSNVILRNFKVITQRRQPQQFECDHCSKPFTTYHALVLHVRSHTKESDFSDVCGQPEISAESLKEHMNNQQCKLSFKCPECKKWCKSAQGVRIHAARVHNKKPKTKQIKKIPKEKNYMCLFCNKKYRSEGYLKSHMIKVHEDMPQTESYRCEQCDFTTLNKCFMKKHVLIHTGYHKVTCEVCGKKIVKSYLTEHMRIHTGEKPYICCYCGKTFGGKKYLIVHERIHTGEKPYQCQLCNKRFTQVSPLRVHILCHMKKNEAGNSFTFRSIHEESNSLSVDKIKNETEKETVTLNQPEKLVEENKPDGGDQERYQCQLCSKCFKSKNLYDGHLISHSDARPHQCDICLKSFKRTNTLAVHRRIHTRERNFVCDVCGRAFVQASQLATHQRRHFDRFTRHCALCDKGFFTNAELHSHMNVKHAANQHVCDACGKSFPNNHSLARHARSHDPDFEPAKHQCEFCGKTFAYRNSLVAHVKSHTGENKYDCHLCGKSVSSKGSLQDHLRLHGGEKNLVCDVCGKAFHKRTTLVVHKRTHTGEKPYVCETCGKAFTQHSTLVIHRRYHTGQRPYQCGLCNKSFVSKALLNGHGKVHANSST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -