Basic Information

Insect: Nasonia longicornis
Gene Symbol: -
Assembly: GCA_000004795.1
Location: GL277953.1:9059-13976[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 1.6e-06 0.0001 22.4 2.4 1 23 400 422 400 422 0.99

2 22 2.2e-06 0.00014 21.9 2.8 1 23 428 451 428 451 0.96

3 22 0.026 1.7 9.1 0.5 2 23 458 479 457 479 0.96

4 22 7.8e-06 0.00051 20.2 0.6 1 23 485 507 485 507 0.97

5 22 0.00014 0.0089 16.3 3.6 3 23 515 535 513 535 0.95

6 22 0.00016 0.01 16.1 0.8 1 23 541 563 541 563 0.97

7 22 0.056 3.6 8.1 6.6 1 23 569 592 569 592 0.96

8 22 6.7e-05 0.0043 17.3 0.2 1 23 683 705 683 705 0.99

9 22 2.2e-05 0.0014 18.8 0.7 2 23 712 734 711 734 0.94

10 22 0.002 0.13 12.6 0.6 1 23 740 762 740 762 0.99

11 22 7.6e-06 0.00049 20.2 2.5 1 23 768 790 768 790 0.97

12 22 0.00043 0.028 14.7 2.5 1 23 796 818 796 818 0.97

13 22 8.2e-05 0.0053 17.0 0.7 3 23 826 846 824 846 0.97

14 22 0.00064 0.042 14.2 0.0 1 23 927 950 927 950 0.98

15 22 9.6e-06 0.00062 19.9 0.1 1 23 962 984 962 984 0.98

16 22 0.04 2.6 8.5 2.1 1 23 1012 1034 1012 1034 0.99

17 22 0.00012 0.0076 16.5 0.2 2 23 1041 1063 1040 1063 0.91

18 22 0.072 4.7 7.7 0.1 1 23 1069 1091 1069 1091 0.97

19 22 1.1e-05 0.00072 19.7 0.5 1 23 1097 1119 1097 1119 0.98

20 22 0.00027 0.017 15.4 1.3 1 23 1125 1147 1125 1147 0.96

21 22 0.0026 0.17 12.3 0.1 1 23 1153 1175 1153 1175 0.98

22 22 6e-05 0.0039 17.4 1.9 1 23 1181 1203 1181 1204 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	1.6e-06	0.0001	22.4	2.4	1	23	400	422	400	422	0.99
2	22	2.2e-06	0.00014	21.9	2.8	1	23	428	451	428	451	0.96
3	22	0.026	1.7	9.1	0.5	2	23	458	479	457	479	0.96
4	22	7.8e-06	0.00051	20.2	0.6	1	23	485	507	485	507	0.97
5	22	0.00014	0.0089	16.3	3.6	3	23	515	535	513	535	0.95
6	22	0.00016	0.01	16.1	0.8	1	23	541	563	541	563	0.97
7	22	0.056	3.6	8.1	6.6	1	23	569	592	569	592	0.96
8	22	6.7e-05	0.0043	17.3	0.2	1	23	683	705	683	705	0.99
9	22	2.2e-05	0.0014	18.8	0.7	2	23	712	734	711	734	0.94
10	22	0.002	0.13	12.6	0.6	1	23	740	762	740	762	0.99
11	22	7.6e-06	0.00049	20.2	2.5	1	23	768	790	768	790	0.97
12	22	0.00043	0.028	14.7	2.5	1	23	796	818	796	818	0.97
13	22	8.2e-05	0.0053	17.0	0.7	3	23	826	846	824	846	0.97
14	22	0.00064	0.042	14.2	0.0	1	23	927	950	927	950	0.98
15	22	9.6e-06	0.00062	19.9	0.1	1	23	962	984	962	984	0.98
16	22	0.04	2.6	8.5	2.1	1	23	1012	1034	1012	1034	0.99
17	22	0.00012	0.0076	16.5	0.2	2	23	1041	1063	1040	1063	0.91
18	22	0.072	4.7	7.7	0.1	1	23	1069	1091	1069	1091	0.97
19	22	1.1e-05	0.00072	19.7	0.5	1	23	1097	1119	1097	1119	0.98
20	22	0.00027	0.017	15.4	1.3	1	23	1125	1147	1125	1147	0.96
21	22	0.0026	0.17	12.3	0.1	1	23	1153	1175	1153	1175	0.98
22	22	6e-05	0.0039	17.4	1.9	1	23	1181	1203	1181	1204	0.93

Sequence Information

Coding Sequence: ATGGAGGAGGTTCCAAGCGATGTGGAGGTTGtcataaaaaatgttagcAGCAAGGGGATAATAATAAGGGACAGAGAGGAGATAACCGATAAGGGAGAGGAGATCAAGACGACAGAGTACTTCTTGGATGTTGGAGAACAAGGTAATGGAGATGAAGTTGACGACACGCAGTTCGTTACTGTTCAGAGCGAACAGGATGGACATTTTGTCGCGGTGGAGGTTGGTGATTCCGGTCAATTGATAATACCGGATAAGGAAGTTATACTGTGGAACGAGATCTGCAGAGTTTGTGCCAACAGTGGAAGCGATAAAGAGTTTATTCCGATATTCTCTGGGGAGGGACTAGAGCACGATCTGAGCAGTAAAATTCATACCTATCTGCCTATGAGGGTTTCCGAAAATGATACCCTTCCTCTTCAAGTATGTTACAATTGCGCAGCAACGATGATAGCATgggatgaaatatttaaaggCTGTATGGATGCTCAGCAGCGGCTTCTAGAACTACAAAGTAAATTAAATCTGAAAGAGCAGTATTATAATGACTCACCGGTTGAGGAAGAAAATATGGGCACAGTATTAGAAGTCGAAACTACTAACCACGAGGAACCTCAGGTGGCAGCCAACGACTCTTTGGAAACACTGCAGATTGTTGAACCTAAcagGTCCAGAAGTTCACAGACACCAAAAACAGATACATcacacaaattaaaaaatcatcttgATGAAAAGAAgtcattcaaattttctaataGTAATGAAAGTGGATGTTTGAGTGTCGTGATATTAACGCAGAATCTTGAAAAAGAACATTTTAACGGACCTGTTGAGAAAAGAGATTCTCTAGTAAGCGAGACAGTCGATGCTGTTGCGAAAGAAACTCGAATCACGACGAGAGTGCTGAATCCACTTGAGATACGTACTTCGAGAGAAACGGATGAAAGCAGCGATCTTACGAAAAACACGAAATTATCCGAAGAAGAAATCACAACGGCAACCGCCAACGTAGCAGATCTTCTAGAGCACGAAGAGTCCGAAAAGGTCGAAGACGAAACTCGAATGAAAATAGCCGAGTTCTCCAGTTCTGCCGACGAATGCCTAGACCGCAGTTCAGAAAGCTCCGACGTCGACGCTCCCGAAAAAGCATCCTCAGAGACCGACAAAAAAGTCAAAAGCCAAAAACGAATGCCAGTGTCCTACACTTGCGACGACTGCGGTAAAATCTTCAAGTTCAAGGATACATTTTCCCGGCACCGGCGCATCCACTCGGACGAGCGCCCGTTTACCTGTCACGTTTGCGGAAAGCGGTTCCGCGACTCCGGCGGACTATGCCGCCACGTCCGAGACGTTCACGCAAAGGTGAAGAAGTGGCCCTGCAGCAGATGCAGCCGGAGTTTTGCATCAAAGGCAACTCGTGACGACCACGAACGCACTCACACGGGTGAGCGGCCCTACATCTGCGATAGCTGTGGCAAGAGCTTCAAGACCAAGGCTTCACTCTACATTCACGCCAAGAGCCATACGGATCTATTCCCACATCTCTGCGTCCACTGCGACAAGAGCTTCCGGAGGAGGCAAGAGCTGCTGGCCCACGTGACGACTCACACTGGCGAGAAGAACTTCGAATGCGACGTGTGCTTCAAGAGCTTCAGGATAAAAATGGAGCTGAGAAGGCACGCGCTCAGCCACTCGGATGAAAAGCCGTTCGTCTGCGAGCTGTGCGACTTCAGATGCAAGCAGAGGCGGTATCTCAACAATCACGTGAAGCACAAGCACAGCTTGATCGAGAAAACACCGTACGAAGGAGCTAGCACATGCTTGAATCTCGAAGATGGCGGGGTCATCACCATCCTCACGACAGAGCCGACGATGGTTTCAGCTAGTGAAATCGACGCCATGACTGTCGTAACGCCTCGACGTCGAAAGCGCAGCAAGAGGGATTCTCTGGATGTCGAGGGCTCAAATAAGTCAAAATCCGCCAACCGCACTGGCCAACGTCGACAAGAGATAATCCAAGCCAAGGTAATCGTCGATGGCACCATCTACTACAAGTGCGAGGAGTGTCCCAAGCTTCTGTCAACTCCGTACAACTACATCGCGCACAAGCGCGTGCACACCCACGAGCGGCCGTGCACCTGCGAGATCTGTGGCAAGAGCTTCACGGCGGGATCGTCGTTGAACCGGCACGTGCGCGACGTCCACCAAAAGATCAAGGACTACAAGTGCGACTATTGTGACCGCAGGCTTGCGTCAAAGGTCGCCAGAGACGAGCACCAGCGCACTCACACGGACGAACGACCCCACGTTTGCGAGACCTGTGGCAAGAGCTTCCGACAGCGAGCATCGCTCTCGGTGCACCGAAGGTTCCACTCCAAGAGCTTCCTGTTCAACTGCAAGCTCTGCCACAGAGGATTTCCCAGGAAGCAAGACATGGAGAGACACGAGTTGACTCATACCGATCAGAAACCTTACGGCTGCAAAGTCTGCGACAAAACTTTCAGGAGCTCGGCCTCGGCCATAAGGCATCGGTCGACTCACGATAACGACAATAAACACATCTGCGATGGCAATCCCGATATCTTTCATTGCAGACAGGCCAGCAGCAACGTACAAAGAAAACCCTGCACGAAAGAAAAGCAAGAGAAGCTTCTACCTAGCTTTCGTCCAACCAAGCAGTGTACCAAGCTTTTGGAGGCTGTTGACCCGCTGAAAGTTGATGAACCGCCAGACACCGACGATTTAGCAAAGCAGATACAGGAAACTGTCGAAAGGTTCACTTACATGTGCGGAGTCTGCGACGAACTTTTTGACGAAGAGGATGCATTGATGCGCCACATACGCAAGGCCCACGAGGAGAGCGATTCTGAGTTCAATCCGATGCGCTACGAGTGCAGCATCTGCGGTCGCTCGTACGAGACCAAAATTGGCCTGATTAGACATCTGGCCAAACATAGAGGTACCACCCATTTGCCTGGTGAGGAAAAGCTCCTCGCCGAGTCCAAGATCCGTTTGGCGCATTTGTCGGGGTCCGTGTACAAGTGCAACATCTGCATGAAGGTTTTATCCTGCCCAAAGTCATTCCTGCGCCACATTCGAGTTCACAACAACGAGAAACCTATCGTGTGCGATAAATGTGGCAAGTCCTACCGCATGGAGCAAGATCTGAAGCGACACCAGGATGACGTGCACGAAAAGATCAAAAGGTTTCCCTGTGACCTGTGCGAAATGTCTTTCGCGGCAAAGGGAACCAGAGATGCGCACAGAAGAATTCATACGGGGGAGAAGCCATTCGAATGCAACGAATGTGGTAAGTTCTTCAGGTCTATCAGCCTGCTGGGTGTACACAAAAGGATGCATCAGGACTATCGACCCCACAAGTGCAATTCTTGCGAGAAAGCCTTCCGATCAAAGCAAAAGCTCGAGGCGCACGAGGCTATTCACACGGGTATCAGACCGTATCCATGCGACatatgcaaaaaattgttCGCGGCTAAAGGAGAGGTGACCAGGCACCGGTCTGTTCACTTTAACGAGAAGCGCTTCCTCTGCTCGGAGTGCGGACTAGCTTTTAGGCTGAACAGGTATCTGAAGACGCATATCAGGATGCACCACGAGGATAAAGCTGAGATTTTGTTGAAGTCTTTGACGgaatga
Protein Sequence: MEEVPSDVEVVIKNVSSKGIIIRDREEITDKGEEIKTTEYFLDVGEQGNGDEVDDTQFVTVQSEQDGHFVAVEVGDSGQLIIPDKEVILWNEICRVCANSGSDKEFIPIFSGEGLEHDLSSKIHTYLPMRVSENDTLPLQVCYNCAATMIAWDEIFKGCMDAQQRLLELQSKLNLKEQYYNDSPVEEENMGTVLEVETTNHEEPQVAANDSLETLQIVEPNRSRSSQTPKTDTSHKLKNHLDEKKSFKFSNSNESGCLSVVILTQNLEKEHFNGPVEKRDSLVSETVDAVAKETRITTRVLNPLEIRTSRETDESSDLTKNTKLSEEEITTATANVADLLEHEESEKVEDETRMKIAEFSSSADECLDRSSESSDVDAPEKASSETDKKVKSQKRMPVSYTCDDCGKIFKFKDTFSRHRRIHSDERPFTCHVCGKRFRDSGGLCRHVRDVHAKVKKWPCSRCSRSFASKATRDDHERTHTGERPYICDSCGKSFKTKASLYIHAKSHTDLFPHLCVHCDKSFRRRQELLAHVTTHTGEKNFECDVCFKSFRIKMELRRHALSHSDEKPFVCELCDFRCKQRRYLNNHVKHKHSLIEKTPYEGASTCLNLEDGGVITILTTEPTMVSASEIDAMTVVTPRRRKRSKRDSLDVEGSNKSKSANRTGQRRQEIIQAKVIVDGTIYYKCEECPKLLSTPYNYIAHKRVHTHERPCTCEICGKSFTAGSSLNRHVRDVHQKIKDYKCDYCDRRLASKVARDEHQRTHTDERPHVCETCGKSFRQRASLSVHRRFHSKSFLFNCKLCHRGFPRKQDMERHELTHTDQKPYGCKVCDKTFRSSASAIRHRSTHDNDNKHICDGNPDIFHCRQASSNVQRKPCTKEKQEKLLPSFRPTKQCTKLLEAVDPLKVDEPPDTDDLAKQIQETVERFTYMCGVCDELFDEEDALMRHIRKAHEESDSEFNPMRYECSICGRSYETKIGLIRHLAKHRGTTHLPGEEKLLAESKIRLAHLSGSVYKCNICMKVLSCPKSFLRHIRVHNNEKPIVCDKCGKSYRMEQDLKRHQDDVHEKIKRFPCDLCEMSFAAKGTRDAHRRIHTGEKPFECNECGKFFRSISLLGVHKRMHQDYRPHKCNSCEKAFRSKQKLEAHEAIHTGIRPYPCDICKKLFAAKGEVTRHRSVHFNEKRFLCSECGLAFRLNRYLKTHIRMHHEDKAEILLKSLTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -