Basic Information

Gene Symbol
ncor1_1
Assembly
GCA_000004795.1
Location
GL277977.1:1502395-1509635[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.5e-09 6.2e-06 26.0 0.0 3 43 511 551 510 554 0.96
2 2 1.4 1.1e+03 -0.4 0.0 32 42 855 865 848 866 0.79

Sequence Information

Coding Sequence
ATGAACAGTGGCCCGGCTGGCGGCCCTGGCCAGCCACCAGCGGGACTACAAGCGACCTCGTCCACCTCCTCTCGTGACCAGCACGTGcagcagcagcagcagcagcagggaaGTGACCCGAGCGGCCTGAACATTACGATAATGAACATCACGGTGCCACCAGTGGTGCCGATCGGCTCGAACAACAACTCGGCCTCGCCTGTGTCCGTCTCCTCGGGACCCTCGTCCATCGtcgtgcagcagcaggtcAGCGgtaggcagcagcagccctcgcCAGCCTcgagcgccgccgcagccTACACGAGGGACGTCTATCGCAACGCCAGTCCCAATgTGAACGAGCGCGTAGCGATAAGCGTGAGCAGTAGCCCAGTCTCTTCGCAAGTGGTTGGAGTTGGCGCGGGTGGCGAATATGTAcagcagcaggaggcgCCGccctttaaaaaaattcgccTCGGCCAACCCACCCAGCTGGTGCCGTCAACCCAGCAACACAGCATTAGCGGCGTTAATGTGATGTCGCATTCAGAGGTGTTTAGAAACCCGGTGCAGGACACGCTTATCATTAAACAGAGGGTCCAAACCTCACAGATCCAGCCTCTGAGGATAGATACAAGGcCGACGGCTGGTGTGTACACGCCACAAACAGAGGCGATTTCGCCGACTCTTCCTGAGCCTAATACACAAGAGGACACGGTATTTAAAATCACCAAAGACGATCTTTTGCAACAGATCGCCAAGGTTGATCGAGAAATTGCAAAAAGGGAATCACAGATTAGCAAACTTCGGAAAAAGGTGAAAGAGATAGAAGAAGTAGCTAGTAAACCCTTGGAGGCGCCTGGCACAAAACGGCCTGTGGAAGAAGCGTCTTCGCAACCCAAGCATCAGTCCcttgtacaaaaaatatatgctgAGAATAGGAAAAAAGCGGAAGAGGCGCACAGGTTGTTAGACAAGCTAGGTCCGAAAGTGAAACTGCCACTCTATAATCAGCCCTCGGATACCAGCGTGTACCAGGAGAATCGCGTTAGGCACCAGTGTCTGAAAACGCGGCTCGTTGAGAGACTTCGGCAGGAACACGCGGATCGCGCCTCGTTGCATCGCCAGCAGTCACAGACCTATGCGATACTCGTGCAGGAGTGGCACCGAAAGGTAGAGAAGCTCGAGGCGACGCAAAAGCGTAAGACGAAGGAGGCCAAGAACCGTGAGTTCTTTGAGAAGGTCTTTCCGGAACTGCGCAAGCAACGCGAGGACAAGGAGCGATTCAACAGGGTCGGAGCACGAATCAAGAGCGAGGCCGATCTTGAAGAAATCATGGATGGTCTGCAAGAGCAGGAGGAAGAGTTGTCGACCGAGTTAAAAAATGCGTTAAAAGAACTTCAGATGGAGGACAAGAAGATGCGTTCGTACGCGGTGATACCGCCGCTGTTGCTGGACGCGAAACAGCGGAGGATCGCGTTTCAGAACCGCAACGGTCTACTGCAGCCTGAGGAGCTCGAGGCGATGCACAGCGAGAGGAAGCTGATCAACGTTTGGAGCCAGACCGAGCACGATATGTTCAAGGAGAAGTACCTCCAGCACCCCAAGAACTTTGGAGCGATAGCCCAGTCATTCGAGCACAAATCCGTCGCGGATTGCGTGCATCACTACTACCTCACTAAGAAAGCGGAGAATTATAAGCAGCTATTGAGAAAATCGAGGCGTACGCGTAGTTCTCGAAACAATCCTAACAATAAGGTAAATAATAGTAACTCCACTATCGGACCTATAGATATATTGACGACGGGAGTAACGACGAGGCTGCAGCGTGAGCAGCAACAGAAAACCCAGGAAAATCCCCagagcagcgcggcggcgtcgagtagtagtagtagcgcgaacgcgacgacgtcgagctCCTCTTCAACAACAAACACCACCTCCACCTCGTCCGCGTCGACGGCGGTCACGAGTGCGAGCTCCGTCACCACGAACTCGTCGTCCGCGTCTTCAAGTAACGCTGCCGTGGCTGCTGCGGCAAGTTCGTCCACCGGTAGTAGTAGAGATGCTGCTTCGGCGAGTTCGACCGCGGAGCCCTCGTCGACAGCAACGACGACCACAATTACGTCGACATCCACGACTGCAGCGTCAGCATCCGTCCCGAGTAccagcgcgacgacgacgacgtcgagcgTACTCACGACGACGCCCACGTCGTCGACCAGCGCCAAGGACGCTCGCGAAGCCAATAAGGAGAACAAAGAGATTAAGACCGAGCCCAAAGACTCGATACTCAAGGATATCAAGGAGGAGTCACAGGTTGAAAGCAAGGGCGCCCTCTCCTCGTCATCCAACACAAGTACGGCCAATACCAACAACGCGAGTAGTAACCTTCAGATAGAGATTCAGCAGCAACAACNNNNNCAGCAAAAANaacaacagcaacagcaaaaAGACAAGAAAAAGAATGCGGGAGTCACTGGCGGATCTACCGCCATCAGCAGGTCGAAGGataagaaaaaggaaaatcacgCGACCCCTATGGAGACCAGTGATGAGGAAGCCCAGGCCATGGACGCGATGGGTAAGTCAATACAATCCTGCGTTAATTACTTTGATGTTCAATCACATCTCTTCTAA
Protein Sequence
MNSGPAGGPGQPPAGLQATSSTSSRDQHVQQQQQQQGSDPSGLNITIMNITVPPVVPIGSNNNSASPVSVSSGPSSIVVQQQVSGRQQQPSPASSAAAAYTRDVYRNASPNVNERVAISVSSSPVSSQVVGVGAGGEYVQQQEAPPFKKIRLGQPTQLVPSTQQHSISGVNVMSHSEVFRNPVQDTLIIKQRVQTSQIQPLRIDTRPTAGVYTPQTEAISPTLPEPNTQEDTVFKITKDDLLQQIAKVDREIAKRESQISKLRKKVKEIEEVASKPLEAPGTKRPVEEASSQPKHQSLVQKIYAENRKKAEEAHRLLDKLGPKVKLPLYNQPSDTSVYQENRVRHQCLKTRLVERLRQEHADRASLHRQQSQTYAILVQEWHRKVEKLEATQKRKTKEAKNREFFEKVFPELRKQREDKERFNRVGARIKSEADLEEIMDGLQEQEEELSTELKNALKELQMEDKKMRSYAVIPPLLLDAKQRRIAFQNRNGLLQPEELEAMHSERKLINVWSQTEHDMFKEKYLQHPKNFGAIAQSFEHKSVADCVHHYYLTKKAENYKQLLRKSRRTRSSRNNPNNKVNNSNSTIGPIDILTTGVTTRLQREQQQKTQENPQSSAAASSSSSSANATTSSSSSTTNTTSTSSASTAVTSASSVTTNSSSASSSNAAVAAAASSSTGSSRDAASASSTAEPSSTATTTTITSTSTTAASASVPSTSATTTTSSVLTTTPTSSTSAKDAREANKENKEIKTEPKDSILKDIKEESQVESKGALSSSSNTSTANTNNASSNLQIEIQQQQXXQQKXQQQQQKDKKKNAGVTGGSTAISRSKDKKKENHATPMETSDEEAQAMDAMGKSIQSCVNYFDVQSHLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00286274;
90% Identity
-
80% Identity
-