Nlon006208.1
Basic Information
- Insect
- Nasonia longicornis
- Gene Symbol
- -
- Assembly
- GCA_000004795.1
- Location
- GL277953.1:1369150-1370589[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-10 2.6e-07 30.1 0.1 4 38 17 52 15 57 0.89 2 2 1.9 1.8e+03 -1.4 0.0 22 33 178 189 178 192 0.88
Sequence Information
- Coding Sequence
- ATGGGGCACAAGCAGAAGATAAAGATCAGGTGTAAATGGGAGAAGGCTGAAATGTTGAAAGCGATAAATTCAGTCCTGGAGAAAAGATTGTCAATGAGAGCAGCTTCCCACGTGTACAATGTACCTACGTCAACTTTGCTGGCCTGGTGCAAAAGGGCTAGAGCAAGAAAGATTAAATTGTCGGACATCAAGAGAGggtattttcaaaatgtattcACTGAACAACAAGAGAATCAACTGAAACAGTATGTCAGGGAAATGAAACTTTCGTTGTTCAAAATGAACTCGATTGAACTGCGAAGAATAGCGTTTCAATTTGCAGAGATGAACAATATCCCGCACAAATTCAACAAAGAATCAGGATTGGCAGGTTATCATTGGTACTCGAATTTCATAAAGAGGCACCGTTTACAGGAGATAGAAGCTGCGGACCCTCTCAATGATATAAGTCCTCCAAGTACCGGCGAGATTTACAAGAGAAAAACCTTTCCAGAACTACTCGCTGATTTACAAAAAGTGTATAAGTTTCCTGCAAGTcgtatttataatatgaaCGCAACAGTTTTGATTTCTGTTCCTAATATGACTACCAAAATAGTCTGTGAATCGGATAAGCATGAACTACAGAGCGAATATATTACCATGGTTAACTGTTGCAATGCAGCAGGTGATTTTGTGCCCCCTTTGATGATTTATCCAGCTAGTAAAACAGATCCGGAATTTATGAAAGGGTGTCCACAAGGAACTGAAATTGTATGTCACCCATCTGGATCATTGCaaagtgaaatatttcatCCCACTTGGTTCAATCGCTTTGTTGATCATGCAAAGCCAAGCAAAAGAAAACCCGTTCTATTGTTATTAAATGGAAATGCACTATGTGCAAAAAATCTGgattttattgagaaaattCGGGAAGTCAACGTgcatattttgaatattccaaAAAAGATTGTGCATCCTTTAGAAGTTAATTTTATTCCTGCTATGAAGAATCATTATGCTTGTGAACAAAACAAATGGGTTAGAAAAACTGGGTTAATCATCAACTTGAAAAAcattggaaaaattattaagagGGCATATGAAAAATCTGCAATCAGTTCTAATGCAATAGATGCATTTCAAGCTTCGGGAATTTATCCTGTgaacaaagaaattttaatacgcACTGCTTGTTTGTCTAAATCAAATACATCAACTACAGACAACTCAGACTATACAGCAGGTCTATTAAATGATGAAGATCAAAAGAGTGACTTGACTATTAGAGATCCtgatgatttctttttcttttatctcaCGAATGAAGAAAATTCCAACACCAGTGGCAGTAATGAAACAGTTGATGGTACAAATATGCCACTTGAACCAATTTTTATAGATTGCAAAGAGGAGTTTAATGAGACTGAACcaaaaagacgaaaaaatattaaatga
- Protein Sequence
- MGHKQKIKIRCKWEKAEMLKAINSVLEKRLSMRAASHVYNVPTSTLLAWCKRARARKIKLSDIKRGYFQNVFTEQQENQLKQYVREMKLSLFKMNSIELRRIAFQFAEMNNIPHKFNKESGLAGYHWYSNFIKRHRLQEIEAADPLNDISPPSTGEIYKRKTFPELLADLQKVYKFPASRIYNMNATVLISVPNMTTKIVCESDKHELQSEYITMVNCCNAAGDFVPPLMIYPASKTDPEFMKGCPQGTEIVCHPSGSLQSEIFHPTWFNRFVDHAKPSKRKPVLLLLNGNALCAKNLDFIEKIREVNVHILNIPKKIVHPLEVNFIPAMKNHYACEQNKWVRKTGLIINLKNIGKIIKRAYEKSAISSNAIDAFQASGIYPVNKEILIRTACLSKSNTSTTDNSDYTAGLLNDEDQKSDLTIRDPDDFFFFYLTNEENSNTSGSNETVDGTNMPLEPIFIDCKEEFNETEPKRRKNIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01036939; iTF_01486970;
- 90% Identity
- iTF_01036939; iTF_01486970;
- 80% Identity
- -