Basic Information

Insect: Nasonia giraulti
Gene Symbol: Bcl11b
Assembly: GCA_000004775.1
Location: GL277768.1:2815132-2829025[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.042 2.8 8.3 0.2 2 23 212 234 211 234 0.96

2 6 3.8e-07 2.5e-05 24.2 1.8 1 23 559 581 559 581 0.99

3 6 0.018 1.2 9.4 0.1 2 23 597 619 596 619 0.96

4 6 1.2e-07 8.2e-06 25.7 2.9 2 23 839 860 838 860 0.97

5 6 8.8e-06 0.00059 19.9 3.3 1 23 866 888 866 888 0.99

6 6 4e-05 0.0026 17.8 0.4 1 22 896 917 896 917 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.042	2.8	8.3	0.2	2	23	212	234	211	234	0.96
2	6	3.8e-07	2.5e-05	24.2	1.8	1	23	559	581	559	581	0.99
3	6	0.018	1.2	9.4	0.1	2	23	597	619	596	619	0.96
4	6	1.2e-07	8.2e-06	25.7	2.9	2	23	839	860	838	860	0.97
5	6	8.8e-06	0.00059	19.9	3.3	1	23	866	888	866	888	0.99
6	6	4e-05	0.0026	17.8	0.4	1	22	896	917	896	917	0.97

Sequence Information

Coding Sequence: ATGACCGCCGATGTATATGTGTGTTCTTCGTGCACCAATTTCTCGCTACTGCCGACGCTGTACCGGAGGCTGTATATCGTCCATCCAATCTGCCGTCGGGCAATTTCCCCTGAAATACGACTGTCGTCAGCGGAGACGTCCCAGAGCACAGCCTCGCCGGACATCGTGATGTGCGGCGGCTGCCGGGTCTCCTACCCGCTGGGCGAGATAGTGCGCTTCATCGAGCACAAGGTGAACCATTGCCGTAGCAACTTACCGGGATGCCAGAGCCCATCGGCAACAGCGGCACCGGAGGACTCGGACCCCGAGGACGCCCTGGCCATCAAGAGCAGCATCGGCTCCGAGACGAGTCCGAGCGAGAAGCTGAACTCGGTGCCGAGCATATCGGCCCCGATAATCAAGAGGTCGGGACGCGTCGAGAGCCCACCCACGCCACAGGGTAGTAGTAGTACCAGTTCCGGAGCTAACGAGGCCGTCAGTCCCATCGAGCTCAGGGCGAGCGCCAGTTCGACGCCCAAGAGGAGGACGGTAGACGGCCTCCTCGACGACGGCATCGACGAGATCGCCAAGAAGCCCAAGACCGAGTCCGTCGACGCCGAGTCCAACACCGTCAGCACCGAACCAAAGTGGCTGCAGTGCTCGCAGTGCTCGCGGCGCCTGTCGTCCGCCTGGGAGATGCTGCAGCACGCGCAGACGGTCCACGGTTCGCGGCTCTACTCGTCCAACGGCTCCTCGGCCAACACGCCGGCGCCGAGTCCGCCCACGCCGACGCCGGTCTCCGGCCATcagcctcagcagcagcagcagcagcagcagcagcagcagcagcaccacctcAGCCCGCTGAACCACCTGAACCTCAGCGGCAAGTCGACCGGCAGCTCCTCCGCCGCCAACTCGTCCGGCGGCAcgtccagcagcggcagctcgtccaaccggcagcagcagcccggaCTCCAGTcctcggcggcgacggcgccGGGCCTCGGCGTGGGCGACCCCCTGCACAGTTTCCTGCGACTGCCCCAGCACCTCGAGCGCGGCTTCGCGCCCATGTTCAGGCCCGAGTTCCTCGCGCTCAACCCCCTCGCCGGCTACCGCGGCCTGCAAGACCTGCAGACCGCGACGCGCAACCTGCAGAACCTCGGCGACCCGCTGCGCGGCATCGACGGCCTCAACCTCGGCGACCCCCTcgtgcgcagctcgctcgacACGCTCAACAACGCGCGCAACCTCGCGAACCTCGCGGAGCTCTCGCACGCGGGCGCCCGAGGCCTCGGCCACGGCCAGCCAGCCCAACTCGAAGCGAACCTGGATTTTTACTCGGCGCGCCTAAGGAGCCTCGCTAACCCGTCCTTAGGCGCGGCTCCTAACACAGCTTCGGTCAGCAGCTCCGGCGGCAGGGGTAGCTCCTtggccgccgccaccgcatCCAGCCAGCCCGAGCCGCCCAGCCCGGCGCTCCAGGCCAACGCCGCCGGCAACAACACCGGCTCCNNNNNNNNNNNNNNNcagcagcagcagcacgcgcaGAAGGAGAGCTCGCCGCCCTGCTACAGCCAGAGCCCGCTCGCCGGGCACCACcaccacaacaacaacaacagcaccGACAGCGACAAGACCTCGCCGCCGATGATCGGCGAGGGCGGCGCGCCCGGCGAGCTGGCCTGCGTCTACACCTGCGACGTCTGCGACAAGAAGTTCCGCTTCCAGTCGAACCTCATCGTGCACCGCAAGAGCCACAAGGAGCAGCTGCGCGCCGAGTCCGAGCAGGCCCGCCGGCCGGTGCGCTGCGACGTCTGCGACGCCGAGCTCAGCGGCTTCGCCGAGCTCAAGAAGCACGTGCGCAAGGAGCACCGGGACGGCCTCGGCGGCGCACAGAGCCCCCAGGGCAGCGTCGAGACCGTGCCCGACGACGACAGCAGCTGCGACGAGAACATGGACCTCGACGAGGAGAACGAGGTCGGCGGCAAGCGCGCCGGCGACGAGGAAgccgacgacggcgaggagAACACGCCCGAGGACCTGTCGACCACCCAGGGCCACCCCGGCGAGGCCGAGCGCGCCGAGAGCAAGGCCAGCCTCGTGGGCGACCTCATGGAGAAGTTCGGCCTGAGCAACATCGACCAGTACTCCGAGGCGTACCGGCAGGCGCTGCAGGAGAACcaccgcagcggcggcgtcggcggcgtcggcggcgtcggcggcgtcggcggcttCGTCAAGGCCGAGTCGACGGCCAGCCTGGCCAACTCGCTGAACAACAACAAGGAGAAGGACTCGACCCTCTCGCCGACCAACTTCAACAGCTCGAGCGCCGGCAACCTCTTCTCCGGCCAGGGCTTCGGACGCGCGGCCGGCCCCGACTTTGCAGGGCTCTGGCTGCCCAGCCCGCACTACCTCGAGAGCAACGAGTTCCGCAAGGCCAGCAAGGCCGCGAGCAGCTCGGCCAGCCTGGCCCTCCAGGGCCTGCCCAGTCCGCTGCTGAAGAAGGAGCGCAGCGGGCGCAACGACACCTGCGAGTACTGCGGCAAGGTATTCAAGAACTGCTCGAACCTCACGGTCCACAGGCGCTCGCACACCGGCGAGAAGCCCTACAAGTGCGAGCTCTGCTCCTACGCCTGCGCCCAGAGCTCCAAGCTCACGAGGCACATGAAGACCCACGGCAGGCACGGCAAGGACACGTACAAGTGCCGCTTCTGCGAGATGCCCTTCTCCGTGCCGAGCACCCTCGAGAAGCACATGCGCAAGTGCGTCGTCGTGGTGCAGCAGGGCCCGAAGCTCGGCATACCCTATCCGAGCAGTCAGGACGAGGACTCGTCCGTCAGCGCCAAGGACACCTGA
Protein Sequence: MTADVYVCSSCTNFSLLPTLYRRLYIVHPICRRAISPEIRLSSAETSQSTASPDIVMCGGCRVSYPLGEIVRFIEHKVNHCRSNLPGCQSPSATAAPEDSDPEDALAIKSSIGSETSPSEKLNSVPSISAPIIKRSGRVESPPTPQGSSSTSSGANEAVSPIELRASASSTPKRRTVDGLLDDGIDEIAKKPKTESVDAESNTVSTEPKWLQCSQCSRRLSSAWEMLQHAQTVHGSRLYSSNGSSANTPAPSPPTPTPVSGHQPQQQQQQQQQQQQHHLSPLNHLNLSGKSTGSSSAANSSGGTSSSGSSSNRQQQPGLQSSAATAPGLGVGDPLHSFLRLPQHLERGFAPMFRPEFLALNPLAGYRGLQDLQTATRNLQNLGDPLRGIDGLNLGDPLVRSSLDTLNNARNLANLAELSHAGARGLGHGQPAQLEANLDFYSARLRSLANPSLGAAPNTASVSSSGGRGSSLAAATASSQPEPPSPALQANAAGNNTGSXXXXXQQQQHAQKESSPPCYSQSPLAGHHHHNNNNSTDSDKTSPPMIGEGGAPGELACVYTCDVCDKKFRFQSNLIVHRKSHKEQLRAESEQARRPVRCDVCDAELSGFAELKKHVRKEHRDGLGGAQSPQGSVETVPDDDSSCDENMDLDEENEVGGKRAGDEEADDGEENTPEDLSTTQGHPGEAERAESKASLVGDLMEKFGLSNIDQYSEAYRQALQENHRSGGVGGVGGVGGVGGFVKAESTASLANSLNNNKEKDSTLSPTNFNSSSAGNLFSGQGFGRAAGPDFAGLWLPSPHYLESNEFRKASKAASSSASLALQGLPSPLLKKERSGRNDTCEYCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRHGKDTYKCRFCEMPFSVPSTLEKHMRKCVVVVQQGPKLGIPYPSSQDEDSSVSAKDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00287579;
90% Identity: iTF_01274781;
80% Identity: -